Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p49520 Brassica napus HOM05D015339 ORTHO05D003858 2.5e-81 305.8 209 100.0
BcaC04g19944 Brassica carinata HOM05D015339 ORTHO05D003858 2.8e-80 302.4 209 99.5
BolC9t57805H Brassica oleracea HOM05D015339 ORTHO05D003858 2.8e-80 302.4 209 99.5
A10p15050 Brassica napus HOM05D015339 ORTHO05D003858 3.6e-72 275.4 210 94.8
BraA10t43587Z Brassica rapa HOM05D015339 ORTHO05D003858 6.1e-72 274.6 209 94.3
BcaB08g36120 Brassica carinata HOM05D015339 ORTHO05D003858 5.6e-57 224.9 210 82.9
Carub.0008s1815 Capsella rubella HOM05D003879 ORTHO05D003858 1.7e-29 133.7 229 41.0
AT5G57570 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 2.4e-28 129.8 134 52.2
BcaC04g19943 Brassica carinata HOM05D015339 ORTHO05D003858 1.3e-24 117.5 111 98.2
Thhalv10014953m.g Eutrema salsugineum HOM05D015339 ORTHO05D003858 4.5e-22 109.0 124 50.0
AT5G57640 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 1.6e-19 100.5 163 40.5
A08p32120 Brassica napus HOM05D003879 ORTHO05D003858 1.4e-12 77.4 127 37.0
BraA08t35135Z Brassica rapa HOM05D003879 ORTHO05D003858 1.4e-12 77.4 127 37.0
Thhalv10008923m.g Eutrema salsugineum HOM05D003879 ORTHO05D003858 1.4e-12 77.4 112 39.3
Lalb_Chr09g0329191 Lupinus albus HOM05D003879 ORTHO05D003858 4.2e-12 75.9 91 39.6
THA.LOC104805175 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 9.3e-12 74.7 136 37.5
Thecc.02G340900 Theobroma cacao HOM05D003879 ORTHO05D003858 2.7e-11 73.2 79 43.0
Hma1.2p1_1079F.1_g254860 Hydrangea macrophylla HOM05D003879 ORTHO05D003858 4.6e-11 72.4 107 37.4
Lsat_1_v5_gn_4_10781 Lactuca sativa HOM05D003879 ORTHO05D003858 6.1e-11 72.0 119 36.1
Ciclev10033434m.g Citrus clementina HOM05D003879 ORTHO05D003858 7.9e-11 71.6 120 33.3
CARHR014450 Cardamine hirsuta HOM05D003879 ORTHO05D003858 1.0e-10 71.2 84 44.0
Aa31LG1G980 Aethionema arabicum HOM05D003879 ORTHO05D003858 1.3e-10 70.9 122 35.2
TAR374G1047 Trochodendron aralioides HOM05D003879 ORTHO05D003858 1.3e-10 70.9 134 32.8
HPP92_007611 Vanilla planifolia HOM05D003879 ORTHO05D003858 1.3e-10 70.9 78 43.6
Thhalv10009583m.g Eutrema salsugineum HOM05D015339 ORTHO05D003858 1.8e-10 70.5 63 50.8
HanXRQChr12g0361951 Helianthus annuus HOM05D003879 ORTHO05D003858 1.8e-10 70.5 82 45.1
Sp1g12410 Schrenkiella parvula HOM05D003879 ORTHO05D003858 1.8e-10 70.5 97 40.2
TAR622G1013 Trochodendron aralioides HOM05D003879 ORTHO05D003858 1.8e-10 70.5 128 32.0
CDE04G3169 Ceratophyllum demersum HOM05D000406 ORTHO05D007930 2.3e-10 70.1 91 37.4
DCAR_014653 Daucus carota HOM05D003879 ORTHO05D003858 2.3e-10 70.1 85 42.4
MBI07_g22385_MAGBIO Magnolia biondii HOM05D003879 ORTHO05D003858 2.3e-10 70.1 104 36.5
AT1G14060 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 3.0e-10 69.7 98 39.8
Carub.0001s1375 Capsella rubella HOM05D003879 ORTHO05D003858 3.0e-10 69.7 76 39.5
Medtr4g082300 Medicago truncatula HOM05D003879 ORTHO05D003858 5.1e-10 68.9 88 36.4
Gohir.D11G305600 Gossypium hirsutum HOM05D003879 ORTHO05D003858 6.7e-10 68.6 120 35.8
Gohir.D11G305800 Gossypium hirsutum HOM05D003879 ORTHO05D003858 6.7e-10 68.6 121 34.7
THA.LOC104824074 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 6.7e-10 68.6 125 36.0
ECA234G2637 Erigeron canadensis HOM05D003879 ORTHO05D003858 8.7e-10 68.2 88 40.9
Nn3g17308 Nelumbo nucifera HOM05D003879 ORTHO05D003858 8.7e-10 68.2 76 42.1
Cpa.g.sc171.23 Carica papaya HOM05D003879 ORTHO05D003858 1.1e-09 67.8 79 39.2
COL.COLO4_27987 Corchorus olitorius HOM05D003879 ORTHO05D003858 1.5e-09 67.4 121 33.9
MELO3C012121.2 Cucumis melo HOM05D003879 ORTHO05D003858 1.5e-09 67.4 76 40.8
Actinidia31968 Actinidia chinensis HOM05D003879 ORTHO05D003858 1.9e-09 67.0 96 35.4
AL1G25920 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 1.9e-09 67.0 153 32.0
CAN.G964.6 Capsicum annuum HOM05D003879 ORTHO05D003858 1.9e-09 67.0 73 45.2
CDE07G0815 Ceratophyllum demersum HOM05D003879 ORTHO05D003858 1.9e-09 67.0 79 43.0
Duzib268G0934 Durio zibethinus HOM05D003879 ORTHO05D003858 1.9e-09 67.0 73 47.9
MD04G1004200 Malus domestica HOM05D003879 ORTHO05D003858 2.5e-09 66.6 76 40.8
PGR119G2196 Punica granatum HOM05D003879 ORTHO05D003858 2.5e-09 66.6 64 46.9
arahy.Tifrunner.gnm1.ann1.WFL4FE Arachis hypogaea HOM05D003879 ORTHO05D003858 3.3e-09 66.2 93 40.9
QL03p069280 Quercus lobata HOM05D003879 ORTHO05D003858 3.3e-09 66.2 111 33.3
CiPaw.06G087900 Carya illinoinensis HOM05D003879 ORTHO05D003858 4.3e-09 65.9 117 35.0
AT2G03230 Arabidopsis thaliana HOM05D020304 ORTHO05D021442 5.7e-09 65.5 136 33.1
Lj4g0017661 Lotus japonicus HOM05D003879 ORTHO05D003858 5.7e-09 65.5 78 38.5
arahy.Tifrunner.gnm1.ann1.8KK2IT Arachis hypogaea HOM05D003879 ORTHO05D003858 7.4e-09 65.1 116 36.2
ClCG05G024040 Citrullus lanatus HOM05D003879 ORTHO05D003858 7.4e-09 65.1 114 34.2
CsaV3_5G033000 Cucumis sativus L. HOM05D003879 ORTHO05D003858 7.4e-09 65.1 128 32.0
VMungo0251G2410 Vigna mungo HOM05D003879 ORTHO05D003858 7.4e-09 65.1 113 33.6
arahy.Tifrunner.gnm1.ann1.1F58IB Arachis hypogaea HOM05D003879 ORTHO05D003858 9.7e-09 64.7 123 32.5
Sc04g0007930 Simmondsia chinensis HOM05D003879 ORTHO05D003858 9.7e-09 64.7 121 32.2
FAN01G2110 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.3e-08 64.3 108 34.3
FAN10G1503 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.3e-08 64.3 124 32.3
Lj4g0023987 Lotus japonicus HOM05D003879 ORTHO05D003858 1.3e-08 64.3 71 40.8
Rhsim12G0132500 Rhododendron simsii HOM05D003879 ORTHO05D003858 1.3e-08 64.3 79 36.7
RcHm_v2.0_Chr1g0342011 Rosa chinensis HOM05D003879 ORTHO05D003858 1.3e-08 64.3 64 42.2
AL5G12880 Arabidopsis lyrata HOM05D020304 ORTHO05D021442 1.6e-08 63.9 118 33.1
PSO063G6167 Papaver somniferum HOM05D003879 ORTHO05D003858 1.6e-08 63.9 80 40.0
vmacro16344 Vaccinium macrocarpon HOM05D003879 ORTHO05D003858 1.6e-08 63.9 148 31.8
Actinidia17746 Actinidia chinensis HOM05D003879 ORTHO05D003858 2.2e-08 63.5 79 36.7
Haze_11967 Corylus avellana HOM05D000508 ORTHO05D000371 2.2e-08 63.5 116 37.1
Nitab4.5_0000391g0360 Nicotiana tabacum HOM05D003879 ORTHO05D003858 2.2e-08 63.5 123 30.9
Duzib251G0512 Durio zibethinus HOM05D003879 ORTHO05D003858 2.8e-08 63.2 124 33.1
Glyma.20G032800 Glycine max HOM05D003879 ORTHO05D003858 2.8e-08 63.2 91 34.1
Nitab4.5_0013306g0020 Nicotiana tabacum HOM05D003879 ORTHO05D003858 2.8e-08 63.2 104 35.6
Pp3c16_17450 Physcomitrium patens HOM05D003879 ORTHO05D003858 2.8e-08 63.2 70 42.9
Sed0022737 Sechium edule HOM05D003879 ORTHO05D003858 2.8e-08 63.2 137 32.1
Thecc.07G109400 Theobroma cacao HOM05D003879 ORTHO05D003858 2.8e-08 63.2 104 38.5
BcaC07g38717 Brassica carinata HOM05D003879 ORTHO05D003858 3.7e-08 62.8 126 32.5
C08p16470 Brassica napus HOM05D003879 ORTHO05D003858 3.7e-08 62.8 126 32.5
Gorai.007G326500 Gossypium raimondii HOM05D003879 ORTHO05D003858 3.7e-08 62.8 104 35.6
Lsat_1_v5_gn_8_48881 Lactuca sativa HOM05D003879 ORTHO05D003858 3.7e-08 62.8 81 40.7
Nn5g27527 Nelumbo nucifera HOM05D003879 ORTHO05D003858 3.7e-08 62.8 113 34.5
Gohir.A11G287541 Gossypium hirsutum HOM05D003879 ORTHO05D003858 4.8e-08 62.4 104 35.6
Sopen04g001620 Solanum pennellii HOM05D003879 ORTHO05D003858 4.8e-08 62.4 74 36.5
PGSC0003DMG400028395 Solanum tuberosum HOM05D003879 ORTHO05D003858 4.8e-08 62.4 64 43.8
TWI73G0721 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 4.8e-08 62.4 108 33.3
TWI60G0224 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 6.3e-08 62.0 79 35.4
Cfa008939 Carpinus fangiana HOM05D003879 ORTHO05D003858 8.2e-08 61.6 120 35.0
Thhalv10005267m.g Eutrema salsugineum HOM05D020304 ORTHO05D021442 8.2e-08 61.6 111 36.0
Nitab4.5_0004690g0010 Nicotiana tabacum HOM05D003879 ORTHO05D003858 8.2e-08 61.6 96 37.5
Sopen05g007910 Solanum pennellii HOM05D003879 ORTHO05D003858 8.2e-08 61.6 64 40.6
FAN06G4142 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.1e-07 61.2 114 30.7
Os03g0647400 Oryza sativa ssp. japonica HOM05D003879 ORTHO05D003858 1.1e-07 61.2 115 32.2
Solyc04g005580.1 Solanum lycopersicum HOM05D003879 ORTHO05D003858 1.1e-07 61.2 74 35.1
TPR.G34072 Trifolium pratense HOM05D003879 ORTHO05D003858 1.1e-07 61.2 135 25.2
Zm00001eb218620 Zea mays HOM05D003879 ORTHO05D003858 1.1e-07 61.2 80 37.5
Atru.chr11.1737 Acer truncatum HOM05D003879 ORTHO05D003858 1.4e-07 60.8 139 29.5
Ah.03g134780 Amaranthus hybridus HOM05D003879 ORTHO05D003858 1.4e-07 60.8 64 43.8
BcaB03g13115 Brassica carinata HOM05D003879 ORTHO05D003858 1.4e-07 60.8 127 33.9
Solyc05g013170.2 Solanum lycopersicum HOM05D003879 ORTHO05D003858 1.4e-07 60.8 79 35.4
Ca_08721_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 1.8e-07 60.5 124 29.8
Ah.02g129450 Amaranthus hybridus HOM05D003879 ORTHO05D003858 2.4e-07 60.1 64 42.2
BolC8t49272H Brassica oleracea HOM05D003879 ORTHO05D003858 2.4e-07 60.1 111 35.1
Zm00001eb050330 Zea mays HOM05D003879 ORTHO05D003858 2.4e-07 60.1 72 34.7
Os07g0158400 Oryza sativa ssp. japonica HOM05D003879 ORTHO05D003858 3.1e-07 59.7 64 39.1
Aqoxy5G03435 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 4.1e-07 59.3 79 30.4
CiPaw.07G072500 Carya illinoinensis HOM05D003879 ORTHO05D003858 4.1e-07 59.3 126 31.7
Dinv34127 Davidia involucrata HOM05D003879 ORTHO05D003858 4.1e-07 59.3 138 33.3
ECA233G3198 Erigeron canadensis HOM05D003879 ORTHO05D003858 4.1e-07 59.3 92 34.8
Prupe.1G004000 Prunus persica HOM05D003879 ORTHO05D003858 4.1e-07 59.3 136 30.1
ATR0559G110 Amborella trichopoda HOM05D003879 ORTHO05D003858 5.3e-07 58.9 123 27.6
FvH4_7g07760 Fragaria vesca HOM05D003879 ORTHO05D003858 5.3e-07 58.9 99 33.3
RhsimUnG0183500 Rhododendron simsii HOM05D003879 ORTHO05D003858 5.3e-07 58.9 112 38.4
MSTRG.2335 Avicennia marina HOM05D003879 ORTHO05D003858 6.9e-07 58.5 133 31.6
Carub.0005s0215 Capsella rubella HOM05D020304 ORTHO05D021442 6.9e-07 58.5 89 36.0
CARHR145560 Cardamine hirsuta HOM05D020304 ORTHO05D021442 6.9e-07 58.5 90 36.7
Manes.08G154000 Manihot esculenta HOM05D003879 ORTHO05D003858 6.9e-07 58.5 110 32.7
BcaB08g34355 Brassica carinata HOM05D003879 ORTHO05D003858 9.0e-07 58.2 98 31.6
BcaB08g34356 Brassica carinata HOM05D003879 ORTHO05D003858 9.0e-07 58.2 98 31.6
BcaB08g34363 Brassica carinata HOM05D003879 ORTHO05D003858 9.0e-07 58.2 98 31.6
Mapoly0084s0083 Marchantia polymorpha HOM05D003879 ORTHO05D003858 9.0e-07 58.2 94 36.2
MSTRG.7783 Avicennia marina HOM05D003879 ORTHO05D003858 1.2e-06 57.8 116 33.6
Aqoxy4G02841 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 1.5e-06 57.4 113 29.2
Eucgr.B03201 Eucalyptus grandis HOM05D003879 ORTHO05D003858 1.5e-06 57.4 133 29.3
Prupe.5G003300 Prunus persica HOM05D003879 ORTHO05D003858 1.5e-06 57.4 115 33.9
COL.COLO4_17583 Corchorus olitorius HOM05D003879 ORTHO05D003858 2.0e-06 57.0 63 36.5
Psat7g156280 Pisum sativum HOM05D003879 ORTHO05D003858 2.0e-06 57.0 109 33.0
Zm00001eb300270 Zea mays HOM05D003879 ORTHO05D003858 2.0e-06 57.0 68 39.7
Phvul.002G169800 Phaseolus vulgaris HOM05D003879 ORTHO05D003858 2.6e-06 56.6 77 35.1
Rhsim05G0092100 Rhododendron simsii HOM05D003879 ORTHO05D003858 2.6e-06 56.6 64 42.2
BcaB08g34362 Brassica carinata HOM05D003879 ORTHO05D003858 4.5e-06 55.8 83 33.7
Dinv16679 Davidia involucrata HOM05D003879 ORTHO05D003858 4.5e-06 55.8 93 39.8
MD06G1002200 Malus domestica HOM05D003879 ORTHO05D003858 4.5e-06 55.8 139 30.2
unitig_21.g20857 Utricularia gibba HOM05D003879 ORTHO05D003858 5.9e-06 55.5 112 28.6
EL10Ac6g13251 Beta vulgaris HOM05D003879 ORTHO05D003858 7.7e-06 55.1 86 36.0
BcaB08g34365 Brassica carinata HOM05D003879 ORTHO05D003858 7.7e-06 55.1 83 34.9
BraA09t40680Z Brassica rapa HOM05D003879 ORTHO05D003858 7.7e-06 55.1 123 28.5
CSS0010298 Camellia sinensis var. sinensis HOM05D003879 ORTHO05D003858 7.7e-06 55.1 127 30.7
SGA_v2.0_scaffold36G14411 Striga asiatica HOM05D003879 ORTHO05D003858 7.7e-06 55.1 99 34.3
Phvul.005G037600 Phaseolus vulgaris HOM05D003879 ORTHO05D003858 1.0e-05 54.7 112 28.6
SalBow8G1689 Salvia bowleyana HOM05D003879 ORTHO05D003858 1.0e-05 54.7 138 29.0


User provided reference genes

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