Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 0.0e+00 1212.2 646 100.0
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 0.0e+00 1206.0 648 99.5
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 0.0e+00 1180.6 646 98.3
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 0.0e+00 1165.6 647 94.6
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 0.0e+00 1152.5 647 94.4
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 0.0e+00 1148.3 647 94.1
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 0.0e+00 1112.4 646 91.8
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 0.0e+00 1106.3 649 91.1
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 0.0e+00 1096.6 652 89.9
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 0.0e+00 1094.7 646 90.9
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 0.0e+00 1094.0 646 87.5
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 0.0e+00 1090.1 646 91.0
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 0.0e+00 1090.1 646 91.0
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 0.0e+00 1088.6 646 90.9
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 0.0e+00 1086.2 647 90.0
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 0.0e+00 1083.6 646 90.6
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 0.0e+00 1082.4 648 90.0
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 2.2e-309 1065.1 648 89.2
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 3.8e-306 1054.3 646 88.2
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 2.2e-298 1028.5 648 82.1
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 1.0e-295 1019.6 649 82.9
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 2.1e-259 899.0 632 77.1
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 2.1e-259 899.0 655 72.5
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 1.2e-256 889.8 655 71.9
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 6.2e-256 887.5 654 70.5
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 6.2e-256 887.5 654 70.5
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 1.4e-255 886.3 660 71.2
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 6.8e-255 884.0 662 70.8
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 4.4e-254 881.3 661 71.7
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 9.9e-254 880.2 654 70.9
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 1.7e-253 879.4 655 72.5
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 2.9e-253 878.6 658 71.4
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 4.9e-253 877.9 656 69.7
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 1.4e-252 876.3 655 71.9
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 1.2e-251 873.2 656 70.0
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 2.7e-251 872.1 661 71.0
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 4.6e-251 871.3 654 69.7
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 7.8e-251 870.5 661 69.6
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 1.3e-250 869.8 661 69.6
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 1.7e-250 869.4 652 68.7
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 3.3e-249 865.1 658 69.0
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 3.3e-249 865.1 653 69.8
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 4.3e-249 864.8 655 68.9
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 1.3e-248 863.2 662 69.0
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 4.8e-248 861.3 653 68.9
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 1.8e-247 859.4 652 70.4
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 1.8e-247 859.4 634 72.1
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 2.4e-247 859.0 660 69.8
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 6.9e-247 857.4 663 69.1
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 9.0e-247 857.1 652 69.8
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 2.6e-246 855.5 650 69.2
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 6.4e-245 850.9 657 70.0
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 1.1e-244 850.1 653 69.8
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 3.2e-244 848.6 664 68.4
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 4.2e-244 848.2 653 69.5
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 5.4e-244 847.8 646 70.0
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 9.3e-244 847.0 653 69.4
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 4.6e-243 844.7 655 67.9
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 1.7e-242 842.8 655 69.3
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 1.5e-241 839.7 638 69.9
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 2.8e-240 835.5 659 67.1
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 6.2e-240 834.3 651 68.7
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 1.4e-239 833.2 661 66.6
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 1.4e-239 833.2 646 69.3
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 3.1e-239 832.0 657 66.8
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 3.1e-239 832.0 649 69.6
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 6.9e-239 830.9 645 69.3
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 1.3e-237 826.6 656 66.9
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 1.7e-237 826.2 653 68.0
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 3.2e-236 822.0 658 67.0
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 1.2e-235 820.1 647 67.7
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 1.0e-234 817.0 655 66.0
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 1.3e-234 816.6 657 67.3
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 8.7e-234 813.9 584 71.2
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 8.1e-232 807.4 657 66.7
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 1.8e-231 806.2 657 66.5
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 3.1e-231 805.4 656 65.9
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 5.3e-231 804.7 659 66.2
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 9.0e-231 803.9 658 65.3
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 1.5e-230 803.1 656 65.7
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 2.0e-230 802.7 653 66.6
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 2.0e-230 802.7 651 65.7
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 4.5e-230 801.6 653 66.3
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 4.5e-230 801.6 656 65.5
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 5.8e-230 801.2 661 65.8
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 3.8e-229 798.5 655 67.2
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 4.9e-229 798.1 576 72.4
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 1.9e-228 796.2 659 65.4
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 1.2e-227 793.5 656 65.2
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 2.1e-227 792.7 661 64.3
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 2.7e-227 792.3 651 63.9
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 1.0e-226 790.4 629 70.7
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 1.3e-226 790.0 647 66.2
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 3.3e-225 785.4 661 67.0
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 1.3e-224 783.5 656 62.5
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 1.6e-224 783.1 659 64.6
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 2.1e-224 782.7 659 63.7
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 2.1e-224 782.7 638 66.6
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 4.1e-223 778.5 654 65.4
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 1.0e-221 773.9 649 65.0
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 1.7e-221 773.1 650 65.4
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 5.0e-221 771.5 660 62.7
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 1.0e-210 737.3 653 61.1
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 9.7e-209 730.7 649 63.6
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 3.7e-208 728.8 656 59.6
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 1.0e-205 720.7 663 61.2
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 1.6e-203 713.4 657 60.0
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 2.1e-203 713.0 657 60.0
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 4.2e-196 688.7 655 58.2
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 3.0e-194 682.6 649 57.5
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 3.3e-193 679.1 630 66.2
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 3.3e-193 679.1 657 58.1
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 1.2e-187 660.6 660 56.2
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 1.4e-186 657.1 636 58.5
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 7.7e-182 641.3 552 63.9
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 3.2e-180 636.0 654 54.9
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 2.1e-179 633.3 646 56.3
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 8.0e-179 631.3 656 53.7
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 2.4e-175 619.8 648 56.5
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 2.2e-160 570.1 660 50.5
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 3.7e-152 542.7 555 55.9
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 1.7e-144 517.3 680 46.9
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 1.5e-137 494.2 680 43.5
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 2.8e-123 446.8 685 41.6
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 2.1e-115 420.6 372 61.6
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 3.9e-101 373.2 337 63.2
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 2.4e-90 337.4 243 68.3
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 2.2e-88 330.9 390 47.7
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 1.6e-62 245.0 297 51.2
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 3.1e-45 187.6 563 29.0
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 4.6e-41 173.7 113 77.0
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 3.2e-34 151.0 118 66.9
MD16G1258100 Malus domestica HOM05D005586 ORTHO05D007044 1.6e-25 122.1 113 61.1
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 6.9e-13 80.1 94 51.1
CBR_g26157 Chara braunii HOM05D005586 ORTHO05D007044 1.3e-08 65.9 99 37.4
MBI16_g35933_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 2.3e-08 65.1 44 70.5


User provided reference genes

Program Settings