Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 9.7e-175 616.7 308 100.0
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 6.1e-153 544.3 311 89.1
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 3.0e-152 542.0 291 93.5
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 1.8e-141 506.1 313 83.1
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 3.2e-141 505.4 310 83.2
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 2.7e-140 502.3 310 82.9
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 3.5e-140 501.9 313 80.5
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 3.9e-139 498.4 308 82.8
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 1.1e-138 496.9 308 82.8
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 1.1e-138 496.9 308 82.8
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 3.3e-138 495.4 320 79.4
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 3.3e-138 495.4 321 79.1
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 1.4e-136 490.0 267 90.6
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 1.5e-135 486.5 267 89.9
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 7.5e-135 484.2 320 76.9
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 4.9e-134 481.5 315 76.5
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 3.9e-131 471.9 318 74.8
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 7.8e-124 447.6 343 67.9
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 8.6e-123 444.1 267 80.9
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 2.5e-122 442.6 286 76.9
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 7.3e-122 441.0 267 79.8
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 7.3e-122 441.0 267 79.8
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 2.8e-121 439.1 267 80.5
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 3.6e-121 438.7 286 77.6
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 3.6e-121 438.7 329 67.8
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 4.7e-121 438.3 286 75.9
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 6.2e-121 438.0 330 67.6
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 6.2e-121 438.0 267 79.4
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 8.1e-121 437.6 267 79.4
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 1.4e-120 436.8 284 75.0
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 2.4e-120 436.0 268 78.4
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 5.2e-120 434.9 267 80.1
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 6.8e-120 434.5 275 77.8
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 1.5e-119 433.3 275 77.5
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 2.6e-119 432.6 275 78.2
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 2.6e-119 432.6 286 74.8
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 3.4e-119 432.2 286 74.8
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 9.9e-119 430.6 284 75.4
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 1.3e-118 430.3 275 77.5
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 1.3e-118 430.3 284 74.3
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 2.9e-118 429.1 285 74.0
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 2.9e-118 429.1 287 74.6
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 3.8e-118 428.7 286 73.8
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 3.8e-118 428.7 285 74.4
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 4.9e-118 428.3 287 74.6
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 4.9e-118 428.3 286 73.4
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 4.9e-118 428.3 284 75.0
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 8.4e-118 427.6 286 73.1
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 8.4e-118 427.6 286 73.8
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 1.1e-117 427.2 332 66.0
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 1.4e-117 426.8 284 74.3
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 1.4e-117 426.8 322 67.7
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 1.4e-117 426.8 285 73.3
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 1.9e-117 426.4 286 74.1
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 3.2e-117 425.6 284 74.3
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 3.2e-117 425.6 284 74.6
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 5.4e-117 424.9 286 74.1
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 7.1e-117 424.5 285 73.7
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 9.2e-117 424.1 284 73.6
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 1.6e-116 423.3 293 72.0
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 1.6e-116 423.3 284 73.9
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 2.1e-116 422.9 287 73.2
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 2.1e-116 422.9 286 73.8
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 2.7e-116 422.5 286 73.8
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 2.7e-116 422.5 284 73.2
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 4.6e-116 421.8 286 72.0
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 4.6e-116 421.8 287 73.5
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 6.0e-116 421.4 284 75.4
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 7.8e-116 421.0 284 73.2
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 1.0e-115 420.6 287 73.9
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 2.3e-115 419.5 235 88.1
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 2.3e-115 419.5 286 72.0
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 2.3e-115 419.5 286 72.4
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 2.3e-115 419.5 285 72.3
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 5.1e-115 418.3 288 72.9
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 6.6e-115 417.9 292 72.3
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 1.5e-114 416.8 284 72.5
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 1.9e-114 416.4 286 71.7
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 2.5e-114 416.0 285 72.6
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 3.3e-114 415.6 287 70.7
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 5.6e-114 414.8 317 67.2
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 5.6e-114 414.8 283 72.8
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 9.6e-114 414.1 284 72.2
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 9.6e-114 414.1 267 73.0
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 1.2e-113 413.7 284 72.2
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 1.2e-113 413.7 283 72.1
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 3.6e-113 412.1 304 68.8
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 4.7e-113 411.8 312 67.6
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 1.4e-112 410.2 283 72.4
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 3.1e-112 409.1 286 71.7
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 4.0e-112 408.7 282 71.3
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 4.0e-112 408.7 283 71.7
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 4.4e-111 405.2 287 71.4
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 5.8e-111 404.8 278 73.4
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 1.3e-110 403.7 278 73.0
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 2.2e-110 402.9 289 69.6
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 1.4e-109 400.2 289 69.6
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 3.9e-107 392.1 267 71.5
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 3.9e-107 392.1 284 70.1
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 1.5e-106 390.2 284 68.3
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 1.9e-106 389.8 286 69.9
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 2.5e-106 389.4 267 70.4
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 7.3e-106 387.9 265 71.3
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 4.8e-105 385.2 267 70.8
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 1.1e-104 384.0 265 69.4
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 9.0e-104 380.9 267 71.2
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 1.4e-101 373.6 254 72.8
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 1.2e-100 370.5 278 66.2
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 2.1e-100 369.8 266 67.7
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 7.9e-100 367.9 264 67.8
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 3.9e-99 365.5 278 64.7
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 1.1e-93 347.4 275 66.9
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 7.1e-93 344.7 276 65.6
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 9.3e-93 344.4 350 54.6
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 1.9e-90 336.7 265 62.3
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 5.6e-90 335.1 513 41.1
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 2.0e-87 326.6 266 60.9
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 4.5e-87 325.5 267 63.7
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 3.5e-84 315.8 213 73.7
Cpa.g.sc62.58 Carica papaya HOM05D005562 ORTHO05D007785 5.1e-67 258.8 147 81.0
HanXRQChr10g0318401 Helianthus annuus HOM05D005562 ORTHO05D007785 2.4e-56 223.4 162 63.6
DCAR_021731 Daucus carota HOM05D005562 ORTHO05D007785 2.9e-54 216.5 277 46.9
PSO384G1669 Papaver somniferum HOM05D005562 ORTHO05D007785 6.5e-54 215.3 298 43.6
Cpa.g.sc26.106 Carica papaya HOM05D005562 ORTHO05D007785 6.1e-52 208.8 131 77.1
Actinidia17846 Actinidia chinensis HOM05D005562 ORTHO05D007785 2.1e-36 157.1 134 65.7
Cpa.g.sc62.56 Carica papaya HOM05D005562 ORTHO05D007785 4.7e-36 156.0 107 73.8
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 3.5e-31 139.8 81 76.5
Actinidia17845 Actinidia chinensis HOM05D005562 ORTHO05D030745 2.6e-26 123.6 84 67.9
SEGI_28239 Sequoiadendron giganteum HOM05D005562 ORTHO05D007785 1.4e-24 117.9 80 66.2
Cfa027024 Carpinus fangiana HOM05D005562 ORTHO05D121372 4.9e-17 92.8 262 27.1
Glyma.08G079000 Glycine max HOM05D005562 ORTHO05D007785 1.3e-09 68.2 45 68.9
CSS0029422 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D111180 3.7e-09 66.6 91 44.0
Glyma.08G079050 Glycine max HOM05D005562 ORTHO05D213306 2.7e-07 60.5 38 60.5
Oeu021926.1 Olea europaea HOM05D005562 ORTHO05D007785 2.3e-06 57.4 52 63.5


User provided reference genes

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