Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g19984 Brassica carinata HOM05D006842 ORTHO05D008908 0.0e+00 1174.1 967 100.0
C09p49110 Brassica napus HOM05D006842 ORTHO05D008908 0.0e+00 1174.1 967 100.0
BolC9t57760H Brassica oleracea HOM05D006842 ORTHO05D008908 0.0e+00 1125.5 967 96.7
BraA10t43553Z Brassica rapa HOM05D006842 ORTHO05D008908 3.2e-272 942.2 969 87.9
A10p14700 Brassica napus HOM05D006842 ORTHO05D008908 7.6e-266 921.0 970 87.1
BcaB08g36087 Brassica carinata HOM05D006842 ORTHO05D008908 6.0e-247 858.2 972 82.8
Thhalv10012580m.g Eutrema salsugineum HOM05D006842 ORTHO05D008908 6.0e-231 805.1 980 79.7
Sp6g18980 Schrenkiella parvula HOM05D006842 ORTHO05D008908 1.5e-229 800.4 980 79.4
CARHR271050 Cardamine hirsuta HOM05D006842 ORTHO05D008908 2.2e-228 796.6 981 78.2
AT5G57250 Arabidopsis thaliana HOM05D006842 ORTHO05D008908 3.1e-227 792.7 980 78.2
AL8G33220 Arabidopsis lyrata HOM05D006842 ORTHO05D008908 4.5e-226 788.9 980 78.1
Carub.0008s1775 Capsella rubella HOM05D006842 ORTHO05D008908 2.6e-205 719.9 980 75.3
Aa31LG3G13140 Aethionema arabicum HOM05D006842 ORTHO05D008908 9.1e-187 658.3 1052 68.5
Cpa.g.sc95.19 Carica papaya HOM05D006842 ORTHO05D008908 4.2e-115 420.2 742 54.2
TAR626G0090 Trochodendron aralioides HOM05D006842 ORTHO05D008908 1.7e-108 398.3 742 51.8
Prupe.1G077100 Prunus persica HOM05D006842 ORTHO05D008908 2.3e-105 387.9 732 50.8
Gorai.004G025400 Gossypium raimondii HOM05D006842 ORTHO05D008908 9.1e-102 375.9 1058 54.8
FvH4_4g07420 Fragaria vesca HOM05D006842 ORTHO05D008908 4.5e-101 373.6 1071 54.3
FAN12G0114 Fragaria x ananassa HOM05D006842 ORTHO05D008908 4.5e-101 373.6 1071 54.3
CiPaw.16G087400 Carya illinoinensis HOM05D006842 ORTHO05D008908 7.7e-101 372.9 1067 55.9
Gohir.D08G028300 Gossypium hirsutum HOM05D006842 ORTHO05D008908 5.0e-100 370.2 1059 54.8
Haze_22005 Corylus avellana HOM05D006842 ORTHO05D008908 3.2e-99 367.5 1025 57.0
Potri.018G143800 Populus trichocarpa HOM05D006842 ORTHO05D008908 3.2e-99 367.5 743 50.9
PGR142G3186 Punica granatum HOM05D006842 ORTHO05D008908 9.4e-99 365.9 1048 51.2
Atru.chr8.567 Acer truncatum HOM05D006842 ORTHO05D008908 3.6e-98 364.0 739 50.2
Ciclev10010743m.g Citrus clementina HOM05D006842 ORTHO05D008908 6.1e-98 363.2 1038 55.8
FAN07G2675 Fragaria x ananassa HOM05D006842 ORTHO05D008908 7.9e-98 362.8 739 48.8
Lj6g0009672 Lotus japonicus HOM05D006842 ORTHO05D008908 5.1e-97 360.1 742 49.5
arahy.Tifrunner.gnm1.ann1.0YDK6Q Arachis hypogaea HOM05D006842 ORTHO05D008908 6.7e-97 359.8 732 45.8
CANSAT11G0234 Cannabis sativa HOM05D006842 ORTHO05D008908 4.4e-96 357.1 726 48.9
Cfa013438 Carpinus fangiana HOM05D006842 ORTHO05D008908 7.4e-96 356.3 1025 55.6
Actinidia01285 Actinidia chinensis HOM05D006842 ORTHO05D008908 2.8e-95 354.4 743 49.4
arahy.Tifrunner.gnm1.ann1.25Z6GM Arachis hypogaea HOM05D006842 ORTHO05D008908 6.3e-95 353.2 732 45.5
QL12p035267 Quercus lobata HOM05D006842 ORTHO05D008908 7.7e-93 346.3 984 54.9
MD13G1243700 Malus domestica HOM05D006842 ORTHO05D008908 5.5e-91 340.1 611 54.5
Gohir.A08G017700 Gossypium hirsutum HOM05D006842 ORTHO05D008908 1.6e-90 338.6 1059 53.4
Thecc.09G184100 Theobroma cacao HOM05D006842 ORTHO05D008908 3.6e-90 337.4 740 48.8
RcHm_v2.0_Chr4g0399881 Rosa chinensis HOM05D006842 ORTHO05D008908 4.0e-89 334.0 1069 53.8
Glyma.15G164700 Glycine max HOM05D006842 ORTHO05D008908 9.7e-88 329.3 740 45.3
ClCG11G011810 Citrullus lanatus HOM05D006842 ORTHO05D008908 2.8e-87 327.8 642 52.2
vmacro20826 Vaccinium macrocarpon HOM05D006842 ORTHO05D008908 1.4e-86 325.5 748 47.6
VMungo1309G0481 Vigna mungo HOM05D006842 ORTHO05D008908 3.1e-86 324.3 744 46.6
MSTRG.26539 Avicennia marina HOM05D006842 ORTHO05D008908 1.0e-84 319.3 751 45.4
Sed0020865 Sechium edule HOM05D006842 ORTHO05D008908 2.9e-84 317.8 728 46.2
Phvul.009G237200 Phaseolus vulgaris HOM05D006842 ORTHO05D008908 2.5e-83 314.7 746 46.0
Medtr2g037740 Medicago truncatula HOM05D006842 ORTHO05D008908 2.1e-82 311.6 745 46.0
CsaV3_2G008680 Cucumis sativus L. HOM05D006842 ORTHO05D008908 6.1e-82 310.1 745 44.2
Lalb_Chr11g0074851 Lupinus albus HOM05D006842 ORTHO05D008908 1.4e-81 308.9 738 48.1
Oeu018814.3 Olea europaea HOM05D006842 ORTHO05D008908 1.2e-80 305.8 629 51.7
Sabra18G0117200 Salix brachista HOM05D006842 ORTHO05D008908 1.5e-80 305.4 667 51.7
Lsat_1_v5_gn_7_55601 Lactuca sativa HOM05D006842 ORTHO05D008908 2.0e-80 305.1 737 46.1
Duzib170G0985 Durio zibethinus HOM05D006842 ORTHO05D008908 4.1e-78 297.4 737 45.6
MELO3C003981.2 Cucumis melo HOM05D006842 ORTHO05D008908 2.0e-77 295.0 738 46.2
Nn8g40885 Nelumbo nucifera HOM05D006842 ORTHO05D008908 1.5e-75 288.9 741 45.3
GSVIVG01012780001 Vitis vinifera HOM05D006842 ORTHO05D008908 6.1e-74 283.5 889 58.8
THA.LOC104811115 Tarenaya hassleriana HOM05D006842 ORTHO05D008908 5.2e-73 280.4 665 57.3
Migut.L01888 Erythranthe guttata HOM05D006842 ORTHO05D008908 2.0e-72 278.5 740 43.5
Rhsim01G0118900 Rhododendron simsii HOM05D006842 ORTHO05D008908 2.6e-72 278.1 671 48.1
Aqoxy7G02761 Aquilegia oxysepala HOM05D006842 ORTHO05D008908 3.4e-72 277.7 633 51.2
Ca_02053_v3 Cicer arietinum L. HOM05D006842 ORTHO05D008908 3.1e-70 271.2 752 39.5
CSS0012280 Camellia sinensis var. sinensis HOM05D006842 ORTHO05D008908 4.1e-70 270.8 579 52.5
PSO339G1909 Papaver somniferum HOM05D006842 ORTHO05D008908 2.3e-68 265.0 745 44.8
COL.COLO4_38436 Corchorus olitorius HOM05D006842 ORTHO05D008908 9.8e-64 249.6 652 43.3
HPP92_021041 Vanilla planifolia HOM05D006842 ORTHO05D008908 9.8e-64 249.6 665 46.9
PSO384G3049 Papaver somniferum HOM05D006842 ORTHO05D008908 3.7e-63 247.7 745 43.9
DCAR_020473 Daucus carota HOM05D006842 ORTHO05D008908 4.9e-63 247.3 576 49.5
Cc06_g21740 Coffea canephora HOM05D006842 ORTHO05D008908 1.1e-62 246.1 744 42.7
Eucgr.D01013 Eucalyptus grandis HOM05D006842 ORTHO05D008908 3.2e-62 244.6 878 54.3
Lj5P661T13 Lonicera japonica HOM05D006842 ORTHO05D008908 2.7e-61 241.5 563 53.8
MBI13_g31535_MAGBIO Magnolia biondii HOM05D006842 ORTHO05D008908 2.3e-60 238.4 665 45.1
Hma1.2p1_0314F.1_g121750 Hydrangea macrophylla HOM05D006842 ORTHO05D008908 2.9e-60 238.0 522 53.6
Nitab4.5_0007383g0050 Nicotiana tabacum HOM05D006842 ORTHO05D008908 3.9e-60 237.7 626 45.7
Nitab4.5_0005943g0060 Nicotiana tabacum HOM05D006842 ORTHO05D008908 1.9e-59 235.3 626 46.3
TPR.G30782 Trifolium pratense HOM05D006842 ORTHO05D008908 2.5e-59 235.0 743 42.4
Sopen05g008190 Solanum pennellii HOM05D006842 ORTHO05D008908 9.5e-59 233.0 629 48.2
SGA_v2.0_scaffold231G43415 Striga asiatica HOM05D006842 ORTHO05D008908 4.1e-54 217.6 682 39.7
HanXRQChr03g0068361 Helianthus annuus HOM05D006842 ORTHO05D008908 6.0e-53 213.8 744 41.8
Peaxi162Scf00528g00082 Petunia axillaris HOM05D006842 ORTHO05D008908 1.6e-50 205.7 488 50.6
SalBow5G4345 Salvia bowleyana HOM05D006842 ORTHO05D008908 3.6e-50 204.5 530 49.6
Psat1g144960 Pisum sativum HOM05D006842 ORTHO05D008908 8.1e-50 203.4 350 35.1
CAN.G272.1 Capsicum annuum HOM05D006842 ORTHO05D008908 1.4e-49 202.6 725 42.9
TWI34G1525 Tripterygium wilfordii HOM05D006842 ORTHO05D008908 2.6e-48 198.4 647 51.3
PGSC0003DMG400018607 Solanum tuberosum HOM05D006842 ORTHO05D008908 1.5e-43 182.6 623 44.8
Dinv25428 Davidia involucrata HOM05D006842 ORTHO05D008908 2.3e-36 158.7 199 46.2
ECA240G2145 Erigeron canadensis HOM05D006842 ORTHO05D008908 2.5e-35 155.2 282 33.0
HPP92_027423 Vanilla planifolia HOM05D006842 ORTHO05D008908 1.4e-33 149.4 273 32.6
Glyma.09G058602 Glycine max HOM05D006842 ORTHO05D008908 4.0e-33 147.9 247 38.5
MD16G1250300 Malus domestica HOM05D006842 ORTHO05D008908 4.0e-33 147.9 242 40.9
Solyc05g013400.4 Solanum lycopersicum HOM05D006842 ORTHO05D008908 4.4e-32 144.4 230 36.1
CDE02G4182 Ceratophyllum demersum HOM05D006842 ORTHO05D008908 1.3e-20 106.3 125 46.4
Os01g0263400 Oryza sativa ssp. japonica HOM05D006842 ORTHO05D008908 2.5e-19 102.1 634 40.4
MD16G1250400 Malus domestica HOM05D006842 ORTHO05D008908 2.9e-15 88.6 170 33.5
Nitab4.5_0007383g0080 Nicotiana tabacum HOM05D006842 ORTHO05D008908 1.9e-14 85.9 210 27.1
Zm00001eb128320 Zea mays HOM05D006842 ORTHO05D008908 1.6e-13 82.8 241 30.7
ATR0626G269 Amborella trichopoda HOM05D006842 ORTHO05D008908 7.9e-13 80.5 210 32.9
Manes.14G159800 Manihot esculenta HOM05D006842 ORTHO05D008908 1.6e-10 72.8 149 30.2
Nitab4.5_0001057g0030 Nicotiana tabacum HOM05D002825 ORTHO05D003824 1.6e-10 72.8 163 28.8
AUR62028364 Chenopodium quinoa HOM05D006842 ORTHO05D008908 1.1e-09 70.1 125 36.0
DCAR_001944 Daucus carota HOM05D007570 ORTHO05D009365 1.4e-09 69.7 106 34.0
Sc08g0004670 Simmondsia chinensis HOM05D006842 ORTHO05D008908 1.4e-09 69.7 147 34.0
Atru.chr3.547 Acer truncatum HOM05D000891 ORTHO05D000761 1.8e-09 69.3 191 25.1
DCAR_022278 Daucus carota HOM05D002825 ORTHO05D003824 2.4e-09 68.9 270 23.7
Oeu030203.1 Olea europaea HOM05D006287 ORTHO05D000003 3.1e-09 68.6 143 25.9
Hund08945 Selenicereus undatus HOM05D006842 ORTHO05D008908 3.1e-09 68.6 135 36.3
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 9.0e-09 67.0 211 22.3
Nitab4.5_0001129g0060 Nicotiana tabacum HOM05D002825 ORTHO05D003824 1.2e-08 66.6 163 27.6
Nitab4.5_0000628g0030 Nicotiana tabacum HOM05D000891 ORTHO05D000761 1.5e-08 66.2 183 24.6
Glyma.09G058502 Glycine max HOM05D006842 ORTHO05D008908 2.6e-08 65.5 153 34.6
PGR031G1904 Punica granatum HOM05D007570 ORTHO05D009365 2.6e-08 65.5 174 24.7
ClCG08G004220 Citrullus lanatus HOM05D007128 ORTHO05D009059 3.4e-08 65.1 164 26.2
AUR62025363 Chenopodium quinoa HOM05D006842 ORTHO05D008908 4.5e-08 64.7 125 34.4
Ah.14g084430 Amaranthus hybridus HOM05D006842 ORTHO05D008908 5.8e-08 64.3 129 35.7
Zm00001eb064910 Zea mays HOM05D002244 ORTHO05D002269 5.8e-08 64.3 158 29.7
Zm00001eb378980 Zea mays HOM05D006877 ORTHO05D008735 7.6e-08 63.9 176 24.4
Lj1P1174T24 Lonicera japonica HOM05D000001 ORTHO05D000003 1.0e-07 63.5 233 25.8
Peaxi162Scf00011g01628 Petunia axillaris HOM05D002825 ORTHO05D003824 1.0e-07 63.5 132 30.3
Prupe.2G007100 Prunus persica HOM05D007570 ORTHO05D009365 1.0e-07 63.5 107 31.8
CDE05G1082 Ceratophyllum demersum HOM05D000001 ORTHO05D031256 1.3e-07 63.2 267 23.6
COL.COLO4_22110 Corchorus olitorius HOM05D000891 ORTHO05D000761 1.3e-07 63.2 185 24.9
CAN.G855.39 Capsicum annuum HOM05D002825 ORTHO05D003824 1.7e-07 62.8 240 25.0
DCAR_003286 Daucus carota HOM05D002825 ORTHO05D003824 1.7e-07 62.8 239 25.1
SGA_v2.0_scaffold7G03840 Striga asiatica HOM05D002890 ORTHO05D009847 1.7e-07 62.8 156 30.1
Duzib128G1161 Durio zibethinus HOM05D007552 ORTHO05D009397 2.2e-07 62.4 160 25.0
Lj5C421G19 Lonicera japonica HOM05D007570 ORTHO05D009365 2.2e-07 62.4 104 31.7
Lj5C430G10 Lonicera japonica HOM05D007570 ORTHO05D009365 2.2e-07 62.4 104 31.7
Sopen01g045570 Solanum pennellii HOM05D002825 ORTHO05D003824 2.9e-07 62.0 150 28.0
CAN.G53.43 Capsicum annuum HOM05D000891 ORTHO05D000761 3.8e-07 61.6 183 24.0
Gohir.A09G160100 Gossypium hirsutum HOM05D000001 ORTHO05D009574 3.8e-07 61.6 138 27.5
PSO210G3135 Papaver somniferum HOM05D008994 ORTHO05D010954 3.8e-07 61.6 112 35.7
Solyc01g103160.3 Solanum lycopersicum HOM05D002825 ORTHO05D003824 3.8e-07 61.6 244 24.6
Sc13g0007300 Simmondsia chinensis HOM05D006842 ORTHO05D008908 4.9e-07 61.2 89 34.8
BraA03t11722Z Brassica rapa HOM05D002825 ORTHO05D003824 8.4e-07 60.5 151 25.2
Carub.0008s0124 Capsella rubella HOM05D005674 ORTHO05D007015 8.4e-07 60.5 144 27.1
PGSC0003DMG400024905 Solanum tuberosum HOM05D002825 ORTHO05D003824 8.4e-07 60.5 150 27.3
Aqoxy1G01503 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 1.1e-06 60.1 240 22.5
Aqoxy1G01507 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 1.1e-06 60.1 240 22.5
Aqoxy4G01271 Aquilegia oxysepala HOM05D000855 ORTHO05D016547 1.4e-06 59.7 175 22.3
Duzib093G1532 Durio zibethinus HOM05D000001 ORTHO05D009574 1.4e-06 59.7 240 22.9
PSO339G3775 Papaver somniferum HOM05D000855 ORTHO05D008530 1.4e-06 59.7 205 24.4
C03p30090 Brassica napus HOM05D002825 ORTHO05D003824 1.9e-06 59.3 151 25.2
Medtr8g031210 Medicago truncatula HOM05D000001 ORTHO05D000003 1.9e-06 59.3 140 33.6
Psat3g098480 Pisum sativum HOM05D008684 ORTHO05D010796 1.9e-06 59.3 245 24.9
A03p25220 Brassica napus HOM05D002825 ORTHO05D003824 2.5e-06 58.9 151 25.2
CDE05G1147 Ceratophyllum demersum HOM05D007700 ORTHO05D009669 2.5e-06 58.9 209 22.0
Os02g0167200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000003 2.5e-06 58.9 263 22.4
PSO832G0796 Papaver somniferum HOM05D000001 ORTHO05D000003 2.5e-06 58.9 244 24.2
Rhsim07G0187500 Rhododendron simsii HOM05D001660 ORTHO05D003277 2.5e-06 58.9 201 26.9
SMO367G1176 Selaginella moellendorffii HOM05D009701 ORTHO05D000003 2.5e-06 58.9 100 33.0
VMungo0251G3088 Vigna mungo HOM05D002244 ORTHO05D002269 2.5e-06 58.9 208 27.4
BcaC01g05136 Brassica carinata HOM05D002825 ORTHO05D003824 3.2e-06 58.5 151 25.2
BolC3t15358H Brassica oleracea HOM05D002825 ORTHO05D003824 3.2e-06 58.5 151 25.2
MD00G1202300 Malus domestica HOM05D007570 ORTHO05D009365 3.2e-06 58.5 91 34.1
MD16G1250600 Malus domestica HOM05D006842 ORTHO05D008908 3.2e-06 58.5 52 55.8
Solyc01g068180.3 Solanum lycopersicum HOM05D005973 ORTHO05D007285 3.2e-06 58.5 214 22.4
CSS0039062 Camellia sinensis var. sinensis HOM05D006556 ORTHO05D008146 4.2e-06 58.2 135 29.6
Phvul.009G215700 Phaseolus vulgaris HOM05D007173 ORTHO05D009151 4.2e-06 58.2 254 24.8
Thhalv10011454m.g Eutrema salsugineum HOM05D002453 ORTHO05D008746 5.5e-06 57.8 171 28.7
Glyma.11G013700 Glycine max HOM05D005862 ORTHO05D007731 5.5e-06 57.8 251 25.5
THA.LOC104808118 Tarenaya hassleriana HOM05D006918 ORTHO05D008525 5.5e-06 57.8 158 27.8
Thecc.10G186400 Theobroma cacao HOM05D007552 ORTHO05D009397 5.5e-06 57.8 160 24.4
Atru.BG.299.p Acer truncatum HOM05D000001 ORTHO05D000003 7.1e-06 57.4 304 23.7
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 7.1e-06 57.4 144 26.4
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 7.1e-06 57.4 144 26.4
C08p36220 Brassica napus HOM05D003039 ORTHO05D008410 7.1e-06 57.4 180 25.0
CDE11G0469 Ceratophyllum demersum HOM05D000001 ORTHO05D000003 7.1e-06 57.4 265 21.5
Migut.F00552 Erythranthe guttata HOM05D000104 ORTHO05D009920 7.1e-06 57.4 146 28.1
Medtr4g015760 Medicago truncatula HOM05D000001 ORTHO05D000003 7.1e-06 57.4 140 32.1
SEGI_25780 Sequoiadendron giganteum HOM05D006740 ORTHO05D008571 7.1e-06 57.4 155 25.8
Sopen01g030120 Solanum pennellii HOM05D005973 ORTHO05D007285 7.1e-06 57.4 214 22.0
Actinidia09797 Actinidia chinensis HOM05D005764 ORTHO05D006600 9.3e-06 57.0 207 25.1
BcaB02g08903 Brassica carinata HOM05D005622 ORTHO05D002854 9.3e-06 57.0 190 26.8
C05p24510 Brassica napus HOM05D005622 ORTHO05D002854 9.3e-06 57.0 189 26.5
Medtr7g082160 Medicago truncatula HOM05D008684 ORTHO05D010796 9.3e-06 57.0 245 24.5
Nn1g06130 Nelumbo nucifera HOM05D000001 ORTHO05D010146 9.3e-06 57.0 167 30.5
Nitab4.5_0000316g0260 Nicotiana tabacum HOM05D005973 ORTHO05D007285 9.3e-06 57.0 221 25.3
SEGI_07640 Sequoiadendron giganteum HOM05D007763 ORTHO05D009537 9.3e-06 57.0 92 34.8
TPR.G37938 Trifolium pratense HOM05D005862 ORTHO05D007731 9.3e-06 57.0 205 26.8


User provided reference genes

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