Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20079 Brassica carinata HOM05D004137 ORTHO05D004804 4.6e-33 144.4 100 100.0
C09p48110 Brassica napus HOM05D004137 ORTHO05D004804 4.6e-33 144.4 100 100.0
BolC9t57661H Brassica oleracea HOM05D004137 ORTHO05D004804 4.6e-33 144.4 100 100.0
A10p13890 Brassica napus HOM05D004137 ORTHO05D004804 1.1e-29 133.3 100 94.0
BraA10t43481Z Brassica rapa HOM05D004137 ORTHO05D004804 1.1e-29 133.3 100 94.0
AT5G56520 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 1.4e-29 132.9 63 93.7
BcaC03g14217 Brassica carinata HOM05D004137 ORTHO05D004804 3.4e-28 128.3 63 92.1
C02p15170 Brassica napus HOM05D004137 ORTHO05D004804 3.4e-28 128.3 63 92.1
Thhalv10015369m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 1.7e-27 125.9 63 90.5
AL8G32280 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 6.4e-27 124.0 63 90.5
Carub.0008s1700 Capsella rubella HOM05D004137 ORTHO05D004804 1.1e-26 123.2 63 90.5
C03p15600 Brassica napus HOM05D004137 ORTHO05D004804 2.1e-25 119.0 63 87.3
BolC3t13997H Brassica oleracea HOM05D004137 ORTHO05D004804 2.1e-25 119.0 63 87.3
CARHR270170 Cardamine hirsuta HOM05D004137 ORTHO05D004804 9.6e-23 110.2 63 81.0
BcaB01g04405 Brassica carinata HOM05D004137 ORTHO05D004804 1.4e-21 106.3 60 81.7
Aa31LG3G12400 Aethionema arabicum HOM05D004137 ORTHO05D004804 1.7e-19 99.4 63 73.0
THA.LOC104811721 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 1.7e-19 99.4 63 68.3
Thhalv10027319m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 1.1e-18 96.7 63 73.0
Carub.0007s1461 Capsella rubella HOM05D004137 ORTHO05D004804 2.4e-18 95.5 63 73.0
Sp7g24280 Schrenkiella parvula HOM05D004137 ORTHO05D004804 3.2e-18 95.1 63 71.4
CARHR233900 Cardamine hirsuta HOM05D004137 ORTHO05D004804 2.1e-17 92.4 63 71.4
C07p54810 Brassica napus HOM05D004137 ORTHO05D004804 4.6e-17 91.3 63 66.7
BolC7t45970H Brassica oleracea HOM05D004137 ORTHO05D004804 4.6e-17 91.3 63 66.7
A03p13340 Brassica napus HOM05D004137 ORTHO05D004804 7.9e-17 90.5 51 84.3
BcaC06g32758 Brassica carinata HOM05D004137 ORTHO05D004804 1.3e-16 89.7 63 66.7
AL7G26620 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 1.8e-16 89.4 62 71.0
BolC1t02148H Brassica oleracea HOM05D004137 ORTHO05D004804 1.8e-16 89.4 63 66.7
BcaC09g50691 Brassica carinata HOM05D004137 ORTHO05D004804 2.3e-16 89.0 63 66.7
C01p22180 Brassica napus HOM05D004137 ORTHO05D004804 2.3e-16 89.0 63 66.7
BraA01t01711Z Brassica rapa HOM05D004137 ORTHO05D004804 2.3e-16 89.0 63 66.7
BraA03t14731Z Brassica rapa HOM05D004137 ORTHO05D004804 2.3e-16 89.0 63 65.1
A01p17580 Brassica napus HOM05D004137 ORTHO05D004804 5.1e-16 87.8 63 66.7
BcaNung02428 Brassica carinata HOM05D004137 ORTHO05D004804 8.7e-16 87.0 63 66.7
A03p56610 Brassica napus HOM05D004137 ORTHO05D004804 1.1e-15 86.7 63 61.9
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 2.4e-13 79.0 63 50.8
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 6.9e-13 77.4 62 50.0
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 1.5e-12 76.3 63 54.0
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.5e-12 76.3 63 52.4
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 2.0e-12 75.9 63 50.8
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 4.5e-12 74.7 64 54.7
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 7.6e-12 73.9 62 54.8
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 2.2e-11 72.4 63 50.8
TWI60G1175 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 2.9e-11 72.0 61 55.7
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 3.8e-11 71.6 63 57.1
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 4.9e-11 71.2 62 51.6
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 1.1e-10 70.1 63 44.4
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 1.9e-10 69.3 63 52.4
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 1.9e-10 69.3 63 55.6
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 2.5e-10 68.9 63 49.2
THA.LOC104810322 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 3.2e-10 68.6 62 45.2
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 4.2e-10 68.2 63 52.4
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 5.5e-10 67.8 63 52.4
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 5.5e-10 67.8 63 49.2
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 9.3e-10 67.0 63 50.8
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 1.2e-09 66.6 63 49.2
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.2e-09 66.6 63 49.2
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.2e-09 66.6 63 49.2
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 1.2e-09 66.6 63 50.8
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 1.6e-09 66.2 62 51.6
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 2.7e-09 65.5 63 47.6
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 2.7e-09 65.5 62 54.8
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 2.7e-09 65.5 63 52.4
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 2.7e-09 65.5 63 52.4
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 3.5e-09 65.1 63 49.2
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 4.6e-09 64.7 63 46.0
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 4.6e-09 64.7 63 49.2
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 6.0e-09 64.3 63 47.6
Cc01_g00130 Coffea canephora HOM05D004137 ORTHO05D004804 7.9e-09 63.9 63 46.0
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 1.0e-08 63.5 63 52.4
A05p17500 Brassica napus HOM05D004137 ORTHO05D004804 1.3e-08 63.2 63 39.7
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 2.3e-08 62.4 63 46.0
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 3.0e-08 62.0 62 45.2
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 3.0e-08 62.0 62 50.0
Carub.0001s4388 Capsella rubella HOM05D004137 ORTHO05D004804 3.9e-08 61.6 62 38.7
SGA_v2.0_scaffold3G01677 Striga asiatica HOM05D004137 ORTHO05D004804 5.1e-08 61.2 56 53.6
AL1G63420 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 6.7e-08 60.8 62 40.3
BcaC08g44196 Brassica carinata HOM05D004137 ORTHO05D004804 1.1e-07 60.1 63 38.1
BolC6t36802H Brassica oleracea HOM05D004137 ORTHO05D004804 1.1e-07 60.1 63 38.1
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 1.1e-07 60.1 63 47.6
Thhalv10011858m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 1.5e-07 59.7 63 38.1
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 1.5e-07 59.7 63 50.8
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 1.9e-07 59.3 62 48.4
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 1.9e-07 59.3 62 48.4
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 1.9e-07 59.3 63 50.8
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 1.9e-07 59.3 63 47.6
PGR102G2770 Punica granatum HOM05D004137 ORTHO05D004804 3.3e-07 58.5 61 42.6
BcaC08g43620 Brassica carinata HOM05D004137 ORTHO05D004804 4.3e-07 58.2 63 38.1
A06p00220 Brassica napus HOM05D004137 ORTHO05D004804 4.3e-07 58.2 63 38.1
C06p10340 Brassica napus HOM05D004137 ORTHO05D004804 4.3e-07 58.2 63 38.1
BolC6t36110H Brassica oleracea HOM05D004137 ORTHO05D004804 4.3e-07 58.2 63 38.1
BraA06t23238Z Brassica rapa HOM05D004137 ORTHO05D004804 4.3e-07 58.2 63 38.1
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 7.4e-07 57.4 63 44.4
Aa31LG3G710 Aethionema arabicum HOM05D004137 ORTHO05D004804 1.3e-06 56.6 40 72.5
Sp1g41045 Schrenkiella parvula HOM05D004137 ORTHO05D004804 1.3e-06 56.6 62 37.1
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 1.3e-06 56.6 62 45.2
AT1G55365 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 1.6e-06 56.2 62 37.1
Sed0012847 Sechium edule HOM05D004137 ORTHO05D004804 1.6e-06 56.2 63 47.6
A08p00680 Brassica napus HOM05D004137 ORTHO05D004804 2.8e-06 55.5 63 34.9
BraA08t32126Z Brassica rapa HOM05D004137 ORTHO05D004804 2.8e-06 55.5 63 34.9
arahy.Tifrunner.gnm1.ann1.K19UZV Arachis hypogaea HOM05D004137 ORTHO05D004804 3.7e-06 55.1 53 47.2
CARHR045030 Cardamine hirsuta HOM05D004137 ORTHO05D004804 3.7e-06 55.1 62 38.7
Manes.09G141000 Manihot esculenta HOM05D004137 ORTHO05D004804 3.7e-06 55.1 63 42.9
CAN.G960.46 Capsicum annuum HOM05D004137 ORTHO05D004804 4.8e-06 54.7 62 43.5
BcaB04g16959 Brassica carinata HOM05D004137 ORTHO05D004804 6.2e-06 54.3 63 34.9
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 8.2e-06 53.9 52 46.2


User provided reference genes

Program Settings