Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p47500 Brassica napus HOM05D003788 ORTHO05D004633 0.0e+00 1349.3 685 100.0
BcaC04g20115 Brassica carinata HOM05D003788 ORTHO05D004633 0.0e+00 1185.6 609 98.7
BolC9t57606H Brassica oleracea HOM05D003788 ORTHO05D004633 0.0e+00 1161.7 608 97.5
A10p13510 Brassica napus HOM05D003788 ORTHO05D004633 7.8e-257 890.6 609 79.0
Sp6g18100 Schrenkiella parvula HOM05D003788 ORTHO05D004633 4.1e-234 815.1 831 59.3
Thhalv10012702m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 6.0e-225 784.6 834 58.8
AL8G31880 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 6.2e-214 748.0 832 55.9
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 1.8e-197 693.3 831 55.2
AT5G56250 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 3.4e-196 689.1 829 54.6
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 1.3e-195 687.2 827 53.8
BcaB01g04387 Brassica carinata HOM05D003788 ORTHO05D004633 1.1e-191 674.1 786 55.7
A03p13630 Brassica napus HOM05D003788 ORTHO05D004633 1.2e-188 664.1 777 55.5
BolC3t14026H Brassica oleracea HOM05D003788 ORTHO05D004633 5.0e-187 658.7 780 54.2
BraA03t10667Z Brassica rapa HOM05D003788 ORTHO05D004633 8.5e-187 657.9 777 55.1
BcaC01g06410 Brassica carinata HOM05D003788 ORTHO05D004633 2.5e-186 656.4 783 54.2
A02p09250 Brassica napus HOM05D003788 ORTHO05D004633 6.7e-184 648.3 787 54.3
C03p15980 Brassica napus HOM05D003788 ORTHO05D004633 5.7e-183 645.2 787 53.7
BcaB05g22252 Brassica carinata HOM05D003788 ORTHO05D004633 2.1e-177 626.7 765 54.2
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 1.2e-159 567.8 779 50.8
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 1.4e-157 560.8 785 50.4
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 3.8e-155 552.7 780 49.5
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 7.1e-93 345.9 737 38.7
Aa31LG3G12140 Aethionema arabicum HOM05D003788 ORTHO05D004633 6.2e-81 306.2 748 38.5
Thhalv10012573m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 2.2e-70 271.2 775 35.1
Carub.0008s1656 Capsella rubella HOM05D003788 ORTHO05D004633 1.9e-69 268.1 768 36.2
AL8G31870 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 2.5e-69 267.7 799 34.8
AL191U10030 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 1.2e-68 265.4 775 35.2
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 4.6e-68 263.5 909 33.0
C03p15990 Brassica napus HOM05D003788 ORTHO05D004633 4.6e-68 263.5 911 33.4
BolC3t14027H Brassica oleracea HOM05D003788 ORTHO05D004633 4.6e-68 263.5 908 32.9
AT5G56240 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 1.2e-63 248.8 797 34.4
CARHR269640 Cardamine hirsuta HOM05D003788 ORTHO05D004633 1.5e-63 248.4 680 35.4
C09p47480 Brassica napus HOM05D003788 ORTHO05D004633 2.0e-63 248.1 768 34.4
BcaC04g20117 Brassica carinata HOM05D003788 ORTHO05D004633 1.1e-61 242.3 732 33.7
BcaC03g14236 Brassica carinata HOM05D003788 ORTHO05D004633 1.2e-60 238.8 756 35.1
BolC9t57603H Brassica oleracea HOM05D003788 ORTHO05D004633 4.7e-60 236.9 746 33.9
C02p15420 Brassica napus HOM05D003788 ORTHO05D004633 5.1e-59 233.4 742 34.8
BolC2t07656H Brassica oleracea HOM05D003788 ORTHO05D004633 5.1e-59 233.4 742 34.8
BraA03t10668Z Brassica rapa HOM05D003788 ORTHO05D004633 7.4e-58 229.6 757 32.1
BcaB01g04386 Brassica carinata HOM05D003788 ORTHO05D004633 1.7e-57 228.4 724 34.5
CARHR218680 Cardamine hirsuta HOM05D003788 ORTHO05D004633 5.3e-56 223.4 186 65.1
A03p13640 Brassica napus HOM05D003788 ORTHO05D004633 5.9e-55 219.9 776 31.4
BraA02t05991Z Brassica rapa HOM05D003788 ORTHO05D004633 1.0e-54 219.2 759 32.4
BcaB05g22251 Brassica carinata HOM05D003788 ORTHO05D004633 1.3e-54 218.8 777 32.4
BraA10t43453Z Brassica rapa HOM05D003788 ORTHO05D004633 1.7e-54 218.4 815 31.7
A10p13490 Brassica napus HOM05D003788 ORTHO05D004633 8.5e-54 216.1 815 31.5
A02p09290 Brassica napus HOM05D003788 ORTHO05D004633 1.9e-53 214.9 756 32.4
BraA02t05990Z Brassica rapa HOM05D003788 ORTHO05D004633 8.0e-52 209.5 194 63.4
Sp6g18090 Schrenkiella parvula HOM05D003788 ORTHO05D004633 2.4e-48 198.0 640 33.9
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 8.8e-43 179.5 564 29.1
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 1.2e-42 179.1 428 34.3
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 2.6e-42 177.9 344 36.6
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 3.4e-42 177.6 426 33.3
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 9.8e-42 176.0 378 36.0
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 2.4e-40 171.4 407 34.9
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 4.1e-40 170.6 441 33.6
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 5.4e-40 170.2 394 34.3
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 5.4e-40 170.2 394 34.3
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 7.0e-40 169.9 391 34.8
Haze_09919 Corylus avellana HOM05D003788 ORTHO05D004633 1.2e-39 169.1 375 34.7
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 2.7e-39 167.9 352 38.4
Gorai.004G034500 Gossypium raimondii HOM05D003788 ORTHO05D004633 4.5e-39 167.2 406 34.0
Gohir.D08G036500 Gossypium hirsutum HOM05D003788 ORTHO05D004633 7.7e-39 166.4 408 34.1
Gohir.A08G026000 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.3e-38 165.6 407 35.1
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 1.3e-38 165.6 385 33.2
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 1.7e-38 165.2 385 34.5
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 2.2e-38 164.9 384 34.9
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 2.9e-38 164.5 443 31.6
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 3.8e-38 164.1 497 31.8
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.9e-37 161.8 377 34.0
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 2.5e-37 161.4 432 32.2
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 9.4e-37 159.5 405 31.9
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 9.4e-37 159.5 377 34.0
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 1.2e-36 159.1 448 31.2
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 1.2e-36 159.1 377 33.7
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.6e-36 158.7 417 33.3
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 3.6e-36 157.5 438 32.6
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 4.7e-36 157.1 427 33.0
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 4.7e-36 157.1 427 33.0
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 6.1e-36 156.8 390 33.6
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 6.1e-36 156.8 412 32.8
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 8.0e-36 156.4 420 33.3
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 8.0e-36 156.4 371 33.4
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 1.4e-35 155.6 332 34.9
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 1.4e-35 155.6 436 32.6
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 1.5e-34 152.1 422 32.2
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 1.5e-34 152.1 319 32.9
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 2.0e-34 151.8 365 32.9
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 2.0e-34 151.8 365 32.9
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 2.6e-34 151.4 398 32.4
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 2.6e-34 151.4 420 31.0
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 2.6e-34 151.4 427 31.9
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 3.4e-34 151.0 436 32.1
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 3.4e-34 151.0 463 32.2
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 4.4e-34 150.6 437 32.3
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 5.7e-34 150.2 357 33.3
Lj8C184G1 Lonicera japonica HOM05D003788 ORTHO05D004633 9.8e-34 149.4 481 28.9
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 1.3e-33 149.1 419 30.8
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 1.7e-33 148.7 365 32.6
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 1.7e-33 148.7 340 35.3
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 2.2e-33 148.3 416 31.2
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 2.2e-33 148.3 387 33.3
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 3.7e-33 147.5 349 32.4
Actinidia31533 Actinidia chinensis HOM05D003788 ORTHO05D004633 6.3e-33 146.7 429 30.3
Cc05_g15760 Coffea canephora HOM05D003788 ORTHO05D004633 8.3e-33 146.4 407 32.7
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 1.4e-32 145.6 374 31.3
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 1.4e-32 145.6 663 28.5
Solyc07g066200.4 Solanum lycopersicum HOM05D003788 ORTHO05D004633 1.4e-32 145.6 459 31.4
MELO3C014063.2 Cucumis melo HOM05D003788 ORTHO05D004633 2.4e-32 144.8 403 32.8
Zm00001eb424700 Zea mays HOM05D003788 ORTHO05D004633 3.1e-32 144.4 414 31.4
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 4.1e-32 144.1 325 34.2
Sopen07g034380 Solanum pennellii HOM05D003788 ORTHO05D004633 7.0e-32 143.3 458 31.4
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 9.1e-32 142.9 390 31.8
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 9.1e-32 142.9 411 31.4
Zm00001eb079970 Zea mays HOM05D003788 ORTHO05D004633 9.1e-32 142.9 415 30.4
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 1.2e-31 142.5 385 33.0
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 1.6e-31 142.1 328 34.5
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 1.6e-31 142.1 325 33.8
PGSC0003DMG400022144 Solanum tuberosum HOM05D003788 ORTHO05D004633 1.6e-31 142.1 458 30.8
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 1.6e-31 142.1 394 31.0
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 2.0e-31 141.7 324 35.2
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 3.5e-31 141.0 701 26.8
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 1.0e-30 139.4 388 31.7
unitig_0.g982 Utricularia gibba HOM05D003788 ORTHO05D004633 1.3e-30 139.0 360 33.6
Aqoxy4G02274 Aquilegia oxysepala HOM05D003788 ORTHO05D004633 1.7e-30 138.7 405 31.6
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 1.7e-30 138.7 388 30.2
Peaxi162Scf00232g00078 Petunia axillaris HOM05D003788 ORTHO05D004633 2.9e-30 137.9 337 32.3
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 3.8e-30 137.5 487 30.4
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 5.0e-30 137.1 628 28.2
THA.LOC104810306 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 6.6e-30 136.7 401 30.2
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 2.5e-29 134.8 719 28.1
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 3.6e-28 131.0 346 31.2
HanXRQChr11g0346921 Helianthus annuus HOM05D003788 ORTHO05D004633 4.7e-28 130.6 339 32.2
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 4.7e-28 130.6 498 28.3
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 8.0e-28 129.8 483 30.0
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 8.0e-28 129.8 370 30.8
unitig_37.g12213 Utricularia gibba HOM05D003788 ORTHO05D004633 1.4e-27 129.0 368 33.7
Actinidia30346 Actinidia chinensis HOM05D003788 ORTHO05D004633 1.8e-27 128.6 338 33.7
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 1.8e-27 128.6 358 32.7
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 2.3e-27 128.3 664 26.5
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 4.0e-27 127.5 697 25.4
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 4.0e-27 127.5 471 28.5
CiPaw.12G143000 Carya illinoinensis HOM05D003788 ORTHO05D004633 2.6e-26 124.8 219 39.7
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 3.4e-26 124.4 400 29.2
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 5.7e-26 123.6 324 34.3
Sc03g0011790 Simmondsia chinensis HOM05D003788 ORTHO05D004633 1.7e-25 122.1 373 30.3
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 2.9e-25 121.3 433 29.8
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 3.7e-25 120.9 443 28.0
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 6.4e-25 120.2 415 29.2
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 8.3e-25 119.8 415 28.7
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 5.4e-24 117.1 703 25.3
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 1.2e-23 115.9 413 27.8
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 4.6e-23 114.0 676 28.1
unitig_46.g18528 Utricularia gibba HOM05D003788 ORTHO05D004633 1.0e-22 112.8 370 31.4
Lsat_1_v5_gn_9_88661 Lactuca sativa HOM05D003788 ORTHO05D004633 2.3e-22 111.7 614 28.0
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 2.9e-22 111.3 224 36.6
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 2.8e-20 104.8 376 27.1
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 5.2e-19 100.5 574 26.0
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 8.3e-17 93.2 750 24.0
MSTRG.13048 Avicennia marina HOM05D003788 ORTHO05D004633 3.2e-16 91.3 193 35.2
CDE06G0258 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 5.4e-16 90.5 154 39.0
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 3.4e-10 71.2 458 24.7
MBI14_g12743_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 7.5e-10 70.1 188 32.4
HPP92_007487 Vanilla planifolia HOM05D003788 ORTHO05D004633 2.9e-09 68.2 178 28.7
Aqoxy2G04009 Aquilegia oxysepala HOM05D003788 ORTHO05D010879 1.7e-06 58.9 230 27.8
CiPaw.01G109800 Carya illinoinensis HOM05D010496 ORTHO05D010879 1.7e-06 58.9 232 25.4
SEGI_04749 Sequoiadendron giganteum HOM05D003788 ORTHO05D004633 2.3e-06 58.5 72 41.7
Mapoly0011s0209 Marchantia polymorpha HOM05D003788 ORTHO05D253274 3.0e-06 58.2 122 29.5
TAR365G1027 Trochodendron aralioides HOM05D010496 ORTHO05D010879 3.9e-06 57.8 241 27.4


User provided reference genes

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