Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p47480 Brassica napus HOM05D003788 ORTHO05D004633 0.0e+00 1800.0 953 100.0
BolC9t57603H Brassica oleracea HOM05D003788 ORTHO05D004633 0.0e+00 1737.6 958 97.2
BcaC04g20117 Brassica carinata HOM05D003788 ORTHO05D004633 0.0e+00 1704.9 957 95.7
A10p13490 Brassica napus HOM05D003788 ORTHO05D004633 0.0e+00 1530.0 973 87.1
BraA10t43453Z Brassica rapa HOM05D003788 ORTHO05D004633 0.0e+00 1528.1 973 86.9
AL8G31870 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 5.6e-306 1054.3 1031 62.2
Carub.0008s1656 Capsella rubella HOM05D003788 ORTHO05D004633 6.2e-305 1050.8 1023 61.1
Thhalv10012573m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 4.5e-303 1044.6 1038 64.6
AT5G56240 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 5.9e-287 991.1 1032 60.1
AL191U10030 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 3.8e-286 988.4 1027 59.7
BcaB05g22251 Brassica carinata HOM05D003788 ORTHO05D004633 6.7e-283 977.6 1041 60.9
C03p15990 Brassica napus HOM05D003788 ORTHO05D004633 3.8e-270 935.3 988 61.3
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 7.5e-266 921.0 995 60.5
BraA03t10668Z Brassica rapa HOM05D003788 ORTHO05D004633 8.2e-265 917.5 1038 59.2
BolC3t14027H Brassica oleracea HOM05D003788 ORTHO05D004633 7.0e-264 914.4 994 59.5
Sp6g18090 Schrenkiella parvula HOM05D003788 ORTHO05D004633 2.7e-263 912.5 866 65.2
C02p15420 Brassica napus HOM05D003788 ORTHO05D004633 4.2e-261 905.2 1015 60.5
BolC2t07656H Brassica oleracea HOM05D003788 ORTHO05D004633 4.2e-261 905.2 1015 60.5
A03p13640 Brassica napus HOM05D003788 ORTHO05D004633 1.4e-256 890.2 1057 57.3
BcaB01g04386 Brassica carinata HOM05D003788 ORTHO05D004633 3.5e-255 885.6 976 62.1
A02p09290 Brassica napus HOM05D003788 ORTHO05D004633 1.2e-236 823.9 1020 56.9
BraA02t05991Z Brassica rapa HOM05D003788 ORTHO05D004633 1.2e-236 823.9 1028 56.3
CARHR269640 Cardamine hirsuta HOM05D003788 ORTHO05D004633 3.2e-224 782.7 1004 54.5
BcaC03g14236 Brassica carinata HOM05D003788 ORTHO05D004633 4.3e-205 719.2 851 58.9
Aa31LG3G12140 Aethionema arabicum HOM05D003788 ORTHO05D004633 7.1e-184 648.7 1090 45.0
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 1.6e-130 471.5 1069 39.9
AL8G31880 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 4.3e-112 410.2 975 39.6
Thhalv10012702m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 9.5e-112 409.1 1007 37.5
Sp6g18100 Schrenkiella parvula HOM05D003788 ORTHO05D004633 1.8e-110 404.8 971 38.6
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 8.9e-110 402.5 962 39.3
AT5G56250 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 5.1e-105 386.7 991 37.4
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 3.6e-103 380.6 992 37.3
BcaB05g22252 Brassica carinata HOM05D003788 ORTHO05D004633 2.6e-101 374.4 943 37.6
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 5.4e-99 366.7 955 35.8
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 1.0e-97 362.5 920 36.2
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 1.5e-96 358.6 919 36.0
A02p09250 Brassica napus HOM05D003788 ORTHO05D004633 1.8e-94 351.7 938 37.3
BcaC01g06410 Brassica carinata HOM05D003788 ORTHO05D004633 1.4e-91 342.0 943 35.5
C03p15980 Brassica napus HOM05D003788 ORTHO05D004633 6.0e-90 336.7 939 35.4
BolC3t14026H Brassica oleracea HOM05D003788 ORTHO05D004633 2.3e-89 334.7 940 35.3
A03p13630 Brassica napus HOM05D003788 ORTHO05D004633 1.1e-86 325.9 957 34.9
BraA03t10667Z Brassica rapa HOM05D003788 ORTHO05D004633 9.9e-85 319.3 953 34.0
BcaB01g04387 Brassica carinata HOM05D003788 ORTHO05D004633 3.2e-83 314.3 944 34.9
C09p47500 Brassica napus HOM05D003788 ORTHO05D004633 3.9e-65 254.2 768 34.4
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 4.6e-58 230.7 1181 27.6
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 7.4e-56 223.4 1215 26.3
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 1.7e-55 222.2 1278 27.1
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 4.8e-55 220.7 1179 26.7
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 6.3e-55 220.3 1088 27.8
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 1.1e-54 219.5 1093 26.9
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 1.4e-54 219.2 1156 27.8
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 1.4e-54 219.2 1165 27.1
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 3.1e-54 218.0 1051 27.1
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 3.1e-54 218.0 1051 27.1
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 9.1e-54 216.5 1214 27.8
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 1.2e-53 216.1 1162 27.9
Haze_09919 Corylus avellana HOM05D003788 ORTHO05D004633 3.4e-53 214.5 1157 27.4
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 5.9e-53 213.8 1199 27.1
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 2.2e-52 211.8 1211 27.7
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 1.9e-51 208.8 1157 27.6
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 3.2e-51 208.0 1209 27.8
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 3.2e-51 208.0 1211 27.8
Gohir.A08G026000 Gossypium hirsutum HOM05D003788 ORTHO05D004633 3.6e-50 204.5 1089 27.8
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 2.3e-49 201.8 1191 25.6
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 3.9e-49 201.1 1233 26.0
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 2.0e-48 198.7 1218 26.5
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 3.3e-48 198.0 1193 27.1
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 3.3e-48 198.0 1194 26.6
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 5.7e-48 197.2 1245 27.4
Gohir.D08G036500 Gossypium hirsutum HOM05D003788 ORTHO05D004633 7.4e-48 196.8 1117 26.9
Gorai.004G034500 Gossypium raimondii HOM05D003788 ORTHO05D004633 7.4e-48 196.8 1099 27.2
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 1.3e-47 196.1 1222 25.9
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 2.2e-47 195.3 1003 27.3
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 8.2e-47 193.4 1014 27.3
BcaC04g20115 Brassica carinata HOM05D003788 ORTHO05D004633 7.0e-46 190.3 671 31.7
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 2.6e-45 188.3 1219 27.0
BolC9t57606H Brassica oleracea HOM05D003788 ORTHO05D004633 7.7e-45 186.8 669 31.8
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 5.0e-44 184.1 1222 25.0
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 5.0e-44 184.1 1211 25.6
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 6.5e-44 183.7 1211 25.4
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 1.1e-43 183.0 1230 25.9
Solyc07g066200.4 Solanum lycopersicum HOM05D003788 ORTHO05D004633 1.9e-43 182.2 1157 26.8
CiPaw.12G143000 Carya illinoinensis HOM05D003788 ORTHO05D004633 4.2e-43 181.0 997 26.8
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 5.5e-43 180.6 1195 27.4
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 9.4e-43 179.9 1180 25.8
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 2.1e-42 178.7 1227 24.1
Peaxi162Scf00232g00078 Petunia axillaris HOM05D003788 ORTHO05D004633 2.1e-42 178.7 1024 26.8
PGSC0003DMG400022144 Solanum tuberosum HOM05D003788 ORTHO05D004633 2.1e-42 178.7 1186 25.8
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 4.7e-42 177.6 1217 25.0
Sopen07g034380 Solanum pennellii HOM05D003788 ORTHO05D004633 4.7e-42 177.6 1191 26.3
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 4.7e-42 177.6 1052 26.0
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 1.8e-41 175.6 1179 25.5
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 2.3e-41 175.3 1217 25.0
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 8.8e-41 173.3 1213 24.6
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 9.7e-40 169.9 1185 25.7
Actinidia31533 Actinidia chinensis HOM05D003788 ORTHO05D004633 1.1e-38 166.4 1133 24.7
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 1.1e-38 166.4 1228 24.6
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 1.4e-38 166.0 1208 25.9
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 1.8e-38 165.6 1208 26.2
MELO3C014063.2 Cucumis melo HOM05D003788 ORTHO05D004633 2.4e-38 165.2 1213 26.0
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 7.0e-38 163.7 1211 25.8
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 1.2e-37 162.9 1129 25.7
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 4.5e-37 161.0 1057 25.6
THA.LOC104810306 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 4.5e-37 161.0 1081 25.8
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 5.9e-37 160.6 887 25.8
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 7.7e-37 160.2 1201 25.3
A10p13510 Brassica napus HOM05D003788 ORTHO05D004633 1.0e-36 159.8 696 31.2
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 1.0e-36 159.8 1122 24.4
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 3.2e-35 154.8 1151 25.5
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 4.2e-35 154.5 1208 25.2
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 2.1e-34 152.1 1138 24.7
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 3.6e-34 151.4 1238 25.9
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 1.8e-33 149.1 479 31.9
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 5.2e-33 147.5 1209 24.7
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 1.5e-32 146.0 908 27.0
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 1.5e-32 146.0 330 34.2
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 1.3e-31 142.9 420 32.1
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 1.7e-31 142.5 420 32.6
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 9.1e-30 136.7 946 25.7
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 9.1e-30 136.7 464 29.7
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 1.6e-29 136.0 969 26.1
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 2.7e-29 135.2 1196 24.7
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 4.5e-29 134.4 457 30.0
Aqoxy4G02274 Aquilegia oxysepala HOM05D003788 ORTHO05D004633 5.9e-29 134.0 406 31.0
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 7.7e-29 133.7 1169 23.4
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 7.7e-29 133.7 385 32.7
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 1.0e-28 133.3 340 32.6
Cc05_g15760 Coffea canephora HOM05D003788 ORTHO05D004633 2.2e-28 132.1 412 30.3
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 2.2e-28 132.1 719 25.6
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 2.9e-28 131.7 432 30.6
Lj8C184G1 Lonicera japonica HOM05D003788 ORTHO05D004633 5.0e-28 131.0 1098 24.6
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 8.5e-28 130.2 963 25.0
Zm00001eb424700 Zea mays HOM05D003788 ORTHO05D004633 8.5e-28 130.2 364 33.0
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 1.1e-27 129.8 451 31.0
BcaC03g14237 Brassica carinata HOM05D003788 ORTHO05D004633 1.9e-27 129.0 148 54.7
HanXRQChr11g0346921 Helianthus annuus HOM05D003788 ORTHO05D004633 5.5e-27 127.5 513 29.2
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 7.2e-27 127.1 376 31.6
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 7.2e-27 127.1 478 29.9
Sc03g0011790 Simmondsia chinensis HOM05D003788 ORTHO05D004633 8.0e-26 123.6 1061 23.6
Zm00001eb079970 Zea mays HOM05D003788 ORTHO05D004633 8.0e-26 123.6 471 29.3
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 1.4e-25 122.9 438 29.7
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 4.0e-25 121.3 767 24.8
Lsat_1_v5_gn_9_88661 Lactuca sativa HOM05D003788 ORTHO05D004633 1.5e-24 119.4 695 26.3
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 2.0e-24 119.0 410 30.7
Actinidia30347 Actinidia chinensis HOM05D003788 ORTHO05D004633 4.4e-24 117.9 312 34.3
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 4.4e-24 117.9 443 29.6
Actinidia30346 Actinidia chinensis HOM05D003788 ORTHO05D004633 7.5e-24 117.1 424 28.8
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 7.5e-24 117.1 342 31.9
BraA02t05990Z Brassica rapa HOM05D003788 ORTHO05D004633 9.8e-24 116.7 202 45.5
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 9.8e-24 116.7 1051 24.3
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 1.7e-23 115.9 1159 24.8
unitig_0.g982 Utricularia gibba HOM05D003788 ORTHO05D004633 2.2e-23 115.5 388 33.2
unitig_46.g18528 Utricularia gibba HOM05D003788 ORTHO05D004633 8.3e-23 113.6 337 32.3
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 1.4e-22 112.8 1153 23.7
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 1.4e-22 112.8 1212 23.7
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 5.4e-22 110.9 381 29.4
MSTRG.13048 Avicennia marina HOM05D003788 ORTHO05D004633 7.0e-22 110.5 908 25.2
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 1.2e-21 109.8 505 29.1
CARHR218680 Cardamine hirsuta HOM05D003788 ORTHO05D004633 1.7e-20 105.9 200 40.5
Cc05_g15750 Coffea canephora HOM05D003788 ORTHO05D004633 2.3e-20 105.5 285 32.3
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 1.6e-18 99.4 700 25.4
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 2.1e-18 99.0 1011 23.2
unitig_37.g12213 Utricularia gibba HOM05D003788 ORTHO05D004633 4.7e-18 97.8 971 22.9
CDE06G0258 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.3e-15 89.7 376 29.0
TAR365G1027 Trochodendron aralioides HOM05D010496 ORTHO05D010879 8.9e-09 67.0 262 27.1
HPP92_007487 Vanilla planifolia HOM05D003788 ORTHO05D004633 1.2e-08 66.6 154 31.8
Nn1g09760 Nelumbo nucifera HOM05D003788 ORTHO05D010879 5.8e-08 64.3 262 27.5
BcaC03g16336 Brassica carinata HOM05D021359 ORTHO05D016065 9.8e-08 63.5 119 40.3
CiPaw.01G109800 Carya illinoinensis HOM05D010496 ORTHO05D010879 1.3e-07 63.2 234 30.3
MBI14_g12743_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 2.2e-07 62.4 160 35.0
SEGI_04749 Sequoiadendron giganteum HOM05D003788 ORTHO05D004633 5.4e-06 57.8 117 36.8
Aqoxy2G04009 Aquilegia oxysepala HOM05D003788 ORTHO05D010879 7.0e-06 57.4 248 28.2
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 7.0e-06 57.4 338 24.9


User provided reference genes

Program Settings