Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p47450 Brassica napus HOM05D003079 ORTHO05D003461 4.0e-133 478.4 295 100.0
BcaC04g20138 Brassica carinata HOM05D003079 ORTHO05D003461 8.6e-120 434.1 295 94.2
BolC9t57600H Brassica oleracea HOM05D003079 ORTHO05D003461 3.1e-109 399.1 277 93.9
BcaB08g35981 Brassica carinata HOM05D003079 ORTHO05D003461 2.6e-108 396.0 296 85.1
A10p13440 Brassica napus HOM05D003079 ORTHO05D003461 9.8e-108 394.0 280 91.8
BraA10t43447Z Brassica rapa HOM05D003079 ORTHO05D003461 9.8e-108 394.0 280 91.8
AT5G56210 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 2.4e-77 293.1 316 57.6
Thhalv10013313m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 4.9e-75 285.4 315 56.5
Sp6g18060 Schrenkiella parvula HOM05D003079 ORTHO05D003461 1.7e-72 276.9 260 63.8
AL8G31840 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 3.6e-70 269.2 317 55.8
Carub.0008s1653 Capsella rubella HOM05D003079 ORTHO05D003461 2.4e-66 256.5 318 51.6
CARHR269610 Cardamine hirsuta HOM05D003079 ORTHO05D003461 4.9e-59 232.3 298 51.0
Aa31LG3G12120 Aethionema arabicum HOM05D003079 ORTHO05D003461 7.9e-41 171.8 313 41.5
THA.LOC104811703 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 1.5e-36 157.5 338 38.2
C01p22370 Brassica napus HOM05D003079 ORTHO05D003461 3.5e-28 129.8 262 38.9
CARHR234020 Cardamine hirsuta HOM05D003079 ORTHO05D003461 3.5e-28 129.8 293 38.2
BcaC09g50710 Brassica carinata HOM05D003079 ORTHO05D003461 1.7e-27 127.5 309 35.6
BolC1t02168H Brassica oleracea HOM05D003079 ORTHO05D003461 3.8e-27 126.3 310 35.8
Carub.0007s1447 Capsella rubella HOM05D003079 ORTHO05D003461 1.5e-26 124.4 287 36.2
BcaNung02417 Brassica carinata HOM05D003079 ORTHO05D003461 4.2e-26 122.9 318 35.5
AT4G26455 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 1.0e-24 118.2 258 37.6
Thhalv10024990m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 2.0e-23 114.0 306 33.0
AL7G26490 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 1.4e-21 107.8 258 36.4
Ciclev10007777m.g Citrus clementina HOM05D003079 ORTHO05D003461 3.5e-20 103.2 354 31.1
BraA01t01726Z Brassica rapa HOM05D003079 ORTHO05D003461 5.9e-20 102.4 262 34.7
CiPaw.12G142800 Carya illinoinensis HOM05D003079 ORTHO05D003461 2.2e-19 100.5 254 34.3
A01p17700 Brassica napus HOM05D003079 ORTHO05D003461 2.9e-19 100.1 262 34.4
Manes.05G204700 Manihot esculenta HOM05D003079 ORTHO05D003461 2.9e-19 100.1 294 32.0
CiPaw.12G142700 Carya illinoinensis HOM05D003079 ORTHO05D003461 5.0e-19 99.4 254 34.3
GSVIVG01014846001 Vitis vinifera HOM05D003079 ORTHO05D003461 8.5e-19 98.6 270 34.1
Sp7g24370 Schrenkiella parvula HOM05D003079 ORTHO05D003461 1.1e-18 98.2 314 31.5
QL08p000493 Quercus lobata HOM05D003079 ORTHO05D003461 2.5e-18 97.1 325 30.5
CiPaw.12G142900 Carya illinoinensis HOM05D003079 ORTHO05D003461 4.2e-18 96.3 186 37.1
MD11G1046100 Malus domestica HOM05D003079 ORTHO05D003461 5.5e-18 95.9 324 30.9
Thecc.07G001500 Theobroma cacao HOM05D003079 ORTHO05D003461 5.5e-18 95.9 286 31.5
Haze_09917 Corylus avellana HOM05D003079 ORTHO05D003461 9.4e-18 95.1 263 33.5
CSS0018146 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 2.1e-17 94.0 263 32.3
MELO3C014061.2 Cucumis melo HOM05D003079 ORTHO05D003461 1.0e-16 91.7 286 30.8
PGR083G0768 Punica granatum HOM05D003079 ORTHO05D003461 1.8e-16 90.9 290 29.7
Cpa.g.sc12.64 Carica papaya HOM05D003079 ORTHO05D003461 2.3e-16 90.5 271 31.0
ClCG10G003820 Citrullus lanatus HOM05D003079 ORTHO05D003461 4.0e-16 89.7 291 30.2
CAN.G623.75 Capsicum annuum HOM05D003079 ORTHO05D003461 5.2e-16 89.4 292 28.4
ClCG00G001200 Citrullus lanatus HOM05D003079 ORTHO05D003461 5.2e-16 89.4 291 30.2
ClCG10G003930 Citrullus lanatus HOM05D003079 ORTHO05D003461 5.2e-16 89.4 291 30.2
Gohir.A13G128400 Gossypium hirsutum HOM05D003079 ORTHO05D003461 5.2e-16 89.4 303 28.7
Gorai.013G147800 Gossypium raimondii HOM05D003079 ORTHO05D003461 5.2e-16 89.4 303 29.0
Gohir.D13G131800 Gossypium hirsutum HOM05D003079 ORTHO05D003461 6.8e-16 89.0 303 29.0
Nitab4.5_0003570g0050 Nicotiana tabacum HOM05D003079 ORTHO05D003461 6.8e-16 89.0 284 28.9
RcHm_v2.0_Chr5g0074601 Rosa chinensis HOM05D003079 ORTHO05D003461 8.8e-16 88.6 351 28.2
Nitab4.5_0002216g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 1.5e-15 87.8 285 29.5
Phvul.L001609 Phaseolus vulgaris HOM05D003079 ORTHO05D003461 2.6e-15 87.0 301 31.6
TWI14G0136 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 2.6e-15 87.0 321 29.0
CANSAT11G2157 Cannabis sativa HOM05D003079 ORTHO05D003461 5.7e-15 85.9 352 29.5
TWI39G1230 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 5.7e-15 85.9 309 29.1
CsaV3_3G003800 Cucumis sativus L. HOM05D003079 ORTHO05D003461 9.7e-15 85.1 192 35.9
FAN21G1152 Fragaria x ananassa HOM05D003079 ORTHO05D003461 9.7e-15 85.1 266 30.8
Duzib268G0697 Durio zibethinus HOM05D003079 ORTHO05D003461 1.3e-14 84.7 354 28.5
FvH4_3g41590 Fragaria vesca HOM05D003079 ORTHO05D003461 1.3e-14 84.7 340 27.6
Peaxi162Scf00232g00614 Petunia axillaris HOM05D003079 ORTHO05D003461 1.3e-14 84.7 295 29.5
Duzib170G0955 Durio zibethinus HOM05D003079 ORTHO05D003461 2.2e-14 84.0 303 29.4
CARHR087980 Cardamine hirsuta HOM05D003079 ORTHO05D003461 2.8e-14 83.6 158 38.0
FAN11G0995 Fragaria x ananassa HOM05D003079 ORTHO05D003461 2.8e-14 83.6 340 27.4
TWI38G1795 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 2.8e-14 83.6 290 28.6
Eucgr.F03644 Eucalyptus grandis HOM05D003079 ORTHO05D003461 4.8e-14 82.8 348 29.0
Gohir.A11G276200 Gossypium hirsutum HOM05D003079 ORTHO05D003461 4.8e-14 82.8 320 27.8
AL3G25210 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 6.3e-14 82.4 161 37.9
Nitab4.5_0000611g0170 Nicotiana tabacum HOM05D003079 ORTHO05D003461 6.3e-14 82.4 280 28.6
CSS0022300 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 1.1e-13 81.6 213 30.0
CSS0035812 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 1.4e-13 81.3 213 30.0
FAN25G3298 Fragaria x ananassa HOM05D003079 ORTHO05D003461 1.8e-13 80.9 354 27.1
FAN16G0740 Fragaria x ananassa HOM05D003079 ORTHO05D003461 2.4e-13 80.5 352 27.3
Potri.001G472000 Populus trichocarpa HOM05D003079 ORTHO05D003461 5.3e-13 79.3 350 28.9
Sc03g0011780 Simmondsia chinensis HOM05D003079 ORTHO05D003461 1.2e-12 78.2 289 27.7
Atru.chr2.3897 Acer truncatum HOM05D003079 ORTHO05D003461 2.0e-12 77.4 170 35.9
Cc05_g15720 Coffea canephora HOM05D003079 ORTHO05D003461 2.0e-12 77.4 319 27.0
DCAR_013756 Daucus carota HOM05D003079 ORTHO05D003461 2.7e-12 77.0 343 28.0
Nitab4.5_0009408g0020 Nicotiana tabacum HOM05D003079 ORTHO05D003461 3.5e-12 76.6 296 28.4
Sabra11G0137800 Salix brachista HOM05D003079 ORTHO05D003461 4.5e-12 76.3 304 34.2
Solyc07g066170.4 Solanum lycopersicum HOM05D003079 ORTHO05D003461 5.9e-12 75.9 287 27.2
Duzib213G0264 Durio zibethinus HOM05D003079 ORTHO05D003461 1.0e-11 75.1 301 27.9
Lj1A901G36 Lonicera japonica HOM05D003079 ORTHO05D003461 1.0e-11 75.1 303 26.4
Sp3g11560 Schrenkiella parvula HOM05D003079 ORTHO05D003461 1.0e-11 75.1 170 35.9
Sed0022199 Sechium edule HOM05D003079 ORTHO05D003461 1.0e-11 75.1 291 29.6
Gohir.D11G286600 Gossypium hirsutum HOM05D003079 ORTHO05D003461 1.3e-11 74.7 307 26.7
Gorai.007G310000 Gossypium raimondii HOM05D003079 ORTHO05D003461 2.9e-11 73.6 307 26.4
MBI15_g44396_MAGBIO Magnolia biondii HOM05D003079 ORTHO05D003461 2.9e-11 73.6 272 29.4
Potri.011G169000 Populus trichocarpa HOM05D003079 ORTHO05D003461 2.9e-11 73.6 305 29.5
Thhalv10020643m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 5.0e-11 72.8 163 37.4
Nitab4.5_0001622g0150 Nicotiana tabacum HOM05D003079 ORTHO05D003461 6.5e-11 72.4 280 26.4
VMungo1080G0483 Vigna mungo HOM05D003079 ORTHO05D003461 8.5e-11 72.0 204 32.4
Nn1g07629 Nelumbo nucifera HOM05D003079 ORTHO05D003461 1.1e-10 71.6 295 30.5
arahy.Tifrunner.gnm1.ann1.FC0SK2 Arachis hypogaea HOM05D003079 ORTHO05D003461 1.9e-10 70.9 310 30.0
TAR627G0159 Trochodendron aralioides HOM05D003079 ORTHO05D003461 1.9e-10 70.9 299 29.4
Sed0005838 Sechium edule HOM05D003079 ORTHO05D003461 2.5e-10 70.5 190 33.2
Medtr3g009740 Medicago truncatula HOM05D003079 ORTHO05D003461 3.2e-10 70.1 298 27.5
CAN.G492.58 Capsicum annuum HOM05D003079 ORTHO05D003461 4.2e-10 69.7 288 28.1
Lj3g0020124 Lotus japonicus HOM05D003079 ORTHO05D003461 4.2e-10 69.7 286 29.0
Psat5g231200 Pisum sativum HOM05D003079 ORTHO05D003461 9.4e-10 68.6 313 27.5
arahy.Tifrunner.gnm1.ann1.WAW8B8 Arachis hypogaea HOM05D003079 ORTHO05D003461 1.2e-09 68.2 314 29.0
Glyma.06G321400 Glycine max HOM05D003079 ORTHO05D003461 2.1e-09 67.4 350 26.9
vmacro09798 Vaccinium macrocarpon HOM05D003079 ORTHO05D003461 2.7e-09 67.0 179 49.2
Glyma.04G113700 Glycine max HOM05D003079 ORTHO05D003461 3.6e-09 66.6 284 28.5
Lalb_Chr15g0079931 Lupinus albus HOM05D003079 ORTHO05D003461 3.6e-09 66.6 273 39.6
Prupe.6G035500 Prunus persica HOM05D003079 ORTHO05D003461 3.6e-09 66.6 355 26.5
PGSC0003DMG400022146 Solanum tuberosum HOM05D003079 ORTHO05D003461 3.6e-09 66.6 284 36.6
vmacro11641 Vaccinium macrocarpon HOM05D003079 ORTHO05D003461 3.6e-09 66.6 298 25.8
Sopen10g001680 Solanum pennellii HOM05D003079 ORTHO05D003461 4.7e-09 66.2 303 26.1
Actinidia31529 Actinidia chinensis HOM05D003079 ORTHO05D003461 6.1e-09 65.9 222 30.6
Aqoxy4G02267 Aquilegia oxysepala HOM05D003079 ORTHO05D003461 6.1e-09 65.9 302 29.8
THA.LOC104815679 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 8.0e-09 65.5 160 33.1
PGSC0003DMG400008693 Solanum tuberosum HOM05D003079 ORTHO05D003461 1.8e-08 64.3 303 26.4
PSO782G1655 Papaver somniferum HOM05D003079 ORTHO05D003461 2.3e-08 63.9 302 26.2
MD03G1043100 Malus domestica HOM05D003079 ORTHO05D003461 5.2e-08 62.8 261 29.9
Nitab4.5_0000152g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 5.2e-08 62.8 297 26.9
HanXRQChr11g0335521 Helianthus annuus HOM05D003079 ORTHO05D003461 1.2e-07 61.6 283 24.4
Psat4g111200 Pisum sativum HOM05D003079 ORTHO05D003461 1.2e-07 61.6 190 30.5
PSO063G6668 Papaver somniferum HOM05D003079 ORTHO05D003461 1.5e-07 61.2 302 26.8
C01p51720 Brassica napus HOM05D003079 ORTHO05D003461 2.0e-07 60.8 170 32.4
BcaC01g03997 Brassica carinata HOM05D003079 ORTHO05D003461 2.6e-07 60.5 158 31.0
A01p40240 Brassica napus HOM05D003079 ORTHO05D003461 2.6e-07 60.5 159 33.3
BraA01t04061Z Brassica rapa HOM05D003079 ORTHO05D003461 2.6e-07 60.5 159 33.3
Hma1.2p1_0193F.1_g084340 Hydrangea macrophylla HOM05D003079 ORTHO05D003461 2.6e-07 60.5 288 25.3
C03p46320 Brassica napus HOM05D003079 ORTHO05D003461 3.4e-07 60.1 163 31.3
BolC3t16901H Brassica oleracea HOM05D003079 ORTHO05D003461 3.4e-07 60.1 163 31.3
Sopen07g034350 Solanum pennellii HOM05D003079 ORTHO05D003461 4.4e-07 59.7 284 25.7
TPR.G16690 Trifolium pratense HOM05D003079 ORTHO05D003461 5.7e-07 59.3 305 27.2
BcaB04g18754 Brassica carinata HOM05D003079 ORTHO05D003461 7.5e-07 58.9 159 32.1
BcaC09g48303 Brassica carinata HOM05D003079 ORTHO05D003461 9.8e-07 58.5 202 30.2
Aa31LG8G580 Aethionema arabicum HOM05D003079 ORTHO05D003461 1.3e-06 58.2 195 28.7
BolC1t05117H Brassica oleracea HOM05D003079 ORTHO05D003461 1.7e-06 57.8 206 30.1
Lj8C183T12 Lonicera japonica HOM05D003079 ORTHO05D003461 1.7e-06 57.8 250 28.0
BcaB04g21010 Brassica carinata HOM05D003079 ORTHO05D003461 3.7e-06 56.6 169 30.8
AT3G13360 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 4.8e-06 56.2 142 35.2
A03p38160 Brassica napus HOM05D003079 ORTHO05D003461 4.8e-06 56.2 164 29.9
BraA03t12969Z Brassica rapa HOM05D003079 ORTHO05D003461 4.8e-06 56.2 164 29.9
AUR62043120 Chenopodium quinoa HOM05D003079 ORTHO05D003461 4.8e-06 56.2 271 27.3
Lalb_Chr04g0259441 Lupinus albus HOM05D003079 ORTHO05D003461 4.8e-06 56.2 290 28.3


User provided reference genes

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