Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p46970 Brassica napus HOM05D006736 ORTHO05D008459 4.4e-53 211.1 110 100.0
BolC9t57545H Brassica oleracea HOM05D006736 ORTHO05D008459 8.3e-52 206.8 110 98.2
BcaC04g20175 Brassica carinata HOM05D006736 ORTHO05D008459 3.5e-50 201.4 110 95.5
BcaB08g35964 Brassica carinata HOM05D006736 ORTHO05D008459 8.0e-47 190.3 110 90.9
Sp6g17830 Schrenkiella parvula HOM05D006736 ORTHO05D008459 7.0e-43 177.2 116 83.6
Thhalv10015819m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 4.3e-40 167.9 119 78.2
AL8G31560 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 4.6e-34 147.9 117 71.8
BcaB01g04378 Brassica carinata HOM05D006736 ORTHO05D008459 1.9e-32 142.5 97 80.4
AT5G55980 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 9.5e-32 140.2 117 69.2
CARHR269350 Cardamine hirsuta HOM05D006736 ORTHO05D008459 3.1e-30 135.2 117 69.2
Carub.0008s1632 Capsella rubella HOM05D006736 ORTHO05D008459 6.4e-28 127.5 122 70.5
Aa31LG3G11890 Aethionema arabicum HOM05D006736 ORTHO05D008459 1.5e-24 116.3 116 61.2
A10p13210 Brassica napus HOM05D006736 ORTHO05D008459 9.9e-21 103.6 53 96.2
BraA10t43419Z Brassica rapa HOM05D006736 ORTHO05D008459 9.9e-21 103.6 53 96.2
Cpa.g.sc12.109 Carica papaya HOM05D006736 ORTHO05D008459 6.2e-15 84.3 58 74.1
Medtr3g461010 Medicago truncatula HOM05D006736 ORTHO05D008459 3.8e-12 75.1 69 58.0
Phvul.006G059230 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 3.8e-12 75.1 81 54.3
VMungo0540G0896 Vigna mungo HOM05D006736 ORTHO05D008459 6.4e-12 74.3 75 61.3
Thecc.07G008000 Theobroma cacao HOM05D006736 ORTHO05D008459 1.4e-11 73.2 93 49.5
Duzib268G0079 Durio zibethinus HOM05D006736 ORTHO05D008459 1.9e-11 72.8 94 51.1
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 2.4e-11 72.4 55 67.3
QL08p003180 Quercus lobata HOM05D006736 ORTHO05D008459 2.4e-11 72.4 62 64.5
Glyma.08G332400 Glycine max HOM05D006736 ORTHO05D008459 7.1e-11 70.9 123 44.7
Psat5g166560 Pisum sativum HOM05D006736 ORTHO05D008459 2.7e-10 68.9 79 53.2
CiPaw.11G206800 Carya illinoinensis HOM05D006736 ORTHO05D008459 3.5e-10 68.6 89 49.4
Cfa021889 Carpinus fangiana HOM05D006736 ORTHO05D008459 4.6e-10 68.2 82 52.4
Eucgr.F02027 Eucalyptus grandis HOM05D006736 ORTHO05D008459 7.8e-10 67.4 105 46.7
Duzib170G0862 Durio zibethinus HOM05D006736 ORTHO05D008459 1.0e-09 67.0 108 44.4
TPR.G17947 Trifolium pratense HOM05D006736 ORTHO05D008459 2.3e-09 65.9 78 52.6
Prupe.6G028200 Prunus persica HOM05D006736 ORTHO05D008459 3.9e-09 65.1 86 48.8
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 5.1e-09 64.7 57 59.6
COL.COLO4_07740 Corchorus olitorius HOM05D006736 ORTHO05D008459 6.6e-09 64.3 94 46.8
Gohir.A13G130900 Gossypium hirsutum HOM05D006736 ORTHO05D008459 8.7e-09 63.9 61 54.1
Gohir.D13G134200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 1.5e-08 63.2 61 54.1
Gorai.013G150500 Gossypium raimondii HOM05D006736 ORTHO05D008459 1.5e-08 63.2 61 54.1
Lj6g0005510 Lotus japonicus HOM05D006736 ORTHO05D008459 1.5e-08 63.2 61 54.1
TWI38G1827 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 2.5e-08 62.4 55 56.4
Potri.001G371400 Populus trichocarpa HOM05D006736 ORTHO05D008459 4.3e-08 61.6 68 52.9
Sabra11G0088600 Salix brachista HOM05D006736 ORTHO05D008459 4.3e-08 61.6 65 53.8
RcHm_v2.0_Chr5g0075611 Rosa chinensis HOM05D006736 ORTHO05D008459 5.6e-08 61.2 90 45.6
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 5.6e-08 61.2 111 41.4
BcaC01g06401 Brassica carinata HOM05D006736 ORTHO05D008459 7.3e-08 60.8 41 73.2
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 7.3e-08 60.8 65 53.8
CsaV3_3G003890 Cucumis sativus L. HOM05D006736 ORTHO05D008459 7.3e-08 60.8 45 60.0
MELO3C024968.2 Cucumis melo HOM05D006736 ORTHO05D008459 9.6e-08 60.5 53 54.7
CsaV3_7G023850 Cucumis sativus L. HOM05D006736 ORTHO05D008459 9.6e-08 60.5 38 68.4
FAN16G2066 Fragaria x ananassa HOM05D002691 ORTHO05D003304 9.6e-08 60.5 89 43.8
Lalb_Chr15g0082301 Lupinus albus HOM05D006736 ORTHO05D008459 9.6e-08 60.5 84 50.0
Manes.01G003400 Manihot esculenta HOM05D006736 ORTHO05D008459 9.6e-08 60.5 91 40.7
Sabra16G0244100 Salix brachista HOM05D006736 ORTHO05D008459 9.6e-08 60.5 69 50.7
Sed0023265 Sechium edule HOM05D006736 ORTHO05D008459 9.6e-08 60.5 78 47.4
FvH4_3g42280 Fragaria vesca HOM05D006736 ORTHO05D008459 1.3e-07 60.1 89 43.8
FAN11G0661 Fragaria x ananassa HOM05D006736 ORTHO05D008459 1.3e-07 60.1 89 43.8
FAN25G3397 Fragaria x ananassa HOM05D006736 ORTHO05D008459 1.3e-07 60.1 89 43.8
FAN21G1732 Fragaria x ananassa HOM05D006736 ORTHO05D008459 2.1e-07 59.3 67 50.7
Peaxi162Scf01164g00020 Petunia axillaris HOM05D006736 ORTHO05D008459 2.8e-07 58.9 46 65.2
ClCG09G021530 Citrullus lanatus HOM05D006736 ORTHO05D008459 3.6e-07 58.5 52 53.8
Aqoxy4G01886 Aquilegia oxysepala HOM05D006736 ORTHO05D008459 4.8e-07 58.2 40 70.0
Ciclev10010675m.g Citrus clementina HOM05D006736 ORTHO05D008459 4.8e-07 58.2 45 60.0
Gohir.D01G078200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 4.8e-07 58.2 49 57.1
Gorai.002G102800 Gossypium raimondii HOM05D006736 ORTHO05D008459 4.8e-07 58.2 49 57.1
ClCG10G003900 Citrullus lanatus HOM05D006736 ORTHO05D008459 6.2e-07 57.8 78 48.7
ClCG10G004060 Citrullus lanatus HOM05D006736 ORTHO05D008459 6.2e-07 57.8 78 48.7
Solyc07g045200.1 Solanum lycopersicum HOM05D006736 ORTHO05D008459 6.2e-07 57.8 46 63.0
Atru.chr2.3834 Acer truncatum HOM05D006736 ORTHO05D008459 8.1e-07 57.4 57 57.9
Lalb_Chr20g0114121 Lupinus albus HOM05D006736 ORTHO05D008459 1.1e-06 57.0 54 57.4
Gohir.A01G093700 Gossypium hirsutum HOM05D006736 ORTHO05D008459 1.4e-06 56.6 49 55.1
Oeu036994.1 Olea europaea HOM05D006736 ORTHO05D008459 1.4e-06 56.6 39 71.8
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 1.4e-06 56.6 38 65.8
Thecc.02G261000 Theobroma cacao HOM05D007247 ORTHO05D009208 1.4e-06 56.6 43 67.4
Aa31LG8G450 Aethionema arabicum HOM05D006736 ORTHO05D008459 2.4e-06 55.8 68 50.0
CiPaw.06G067400 Carya illinoinensis HOM05D007247 ORTHO05D009208 2.4e-06 55.8 33 72.7
Dinv15222 Davidia involucrata HOM05D007247 ORTHO05D009208 2.4e-06 55.8 66 51.5
Duzib251G0560 Durio zibethinus HOM05D007247 ORTHO05D009208 2.4e-06 55.8 83 49.4
Gohir.A03G134800 Gossypium hirsutum HOM05D007247 ORTHO05D009208 2.4e-06 55.8 68 51.5
Gohir.D02G158400 Gossypium hirsutum HOM05D007247 ORTHO05D009208 2.4e-06 55.8 68 51.5
Gorai.005G177800 Gossypium raimondii HOM05D007247 ORTHO05D009208 2.4e-06 55.8 68 51.5
Manes.05G200400 Manihot esculenta HOM05D006736 ORTHO05D008459 2.4e-06 55.8 93 40.9
GSVIVG01014741001 Vitis vinifera HOM05D006736 ORTHO05D008459 2.4e-06 55.8 101 43.6
arahy.Tifrunner.gnm1.ann1.FR49Y0 Arachis hypogaea HOM05D006736 ORTHO05D008459 3.1e-06 55.5 47 57.4
arahy.Tifrunner.gnm1.ann1.P4RFEM Arachis hypogaea HOM05D006736 ORTHO05D008459 3.1e-06 55.5 47 57.4
Solyc12g006220.3 Solanum lycopersicum HOM05D006736 ORTHO05D008459 3.1e-06 55.5 95 43.2
TWI39G1297 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 3.1e-06 55.5 106 38.7
CANSAT01G0364 Cannabis sativa HOM05D007247 ORTHO05D009208 4.0e-06 55.1 34 73.5
Migut.M00067 Erythranthe guttata HOM05D006736 ORTHO05D008459 4.0e-06 55.1 55 54.5
Sopen12g002170 Solanum pennellii HOM05D006736 ORTHO05D008459 4.0e-06 55.1 95 43.2
ATR0824G192 Amborella trichopoda HOM05D007247 ORTHO05D009208 5.3e-06 54.7 78 44.9
AT3G13227 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 5.3e-06 54.7 90 41.1
Haze_12254 Corylus avellana HOM05D007247 ORTHO05D009208 5.3e-06 54.7 33 72.7
Atru.chr11.2143 Acer truncatum HOM05D007247 ORTHO05D009208 6.9e-06 54.3 34 73.5
DCAR_024425 Daucus carota HOM05D000669 ORTHO05D000679 6.9e-06 54.3 47 57.4
ATR0751G116 Amborella trichopoda HOM05D006736 ORTHO05D008459 9.0e-06 53.9 38 63.2
Hma1.2p1_0599F.1_g186970 Hydrangea macrophylla HOM05D006736 ORTHO05D008459 9.0e-06 53.9 69 47.8
MD03G1035000 Malus domestica HOM05D006736 ORTHO05D008459 9.0e-06 53.9 42 66.7
Sed0014616 Sechium edule HOM05D006736 ORTHO05D008459 9.0e-06 53.9 45 53.3


User provided reference genes

Program Settings