Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 2.3e-128 462.2 236 100.0
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 5.1e-75 285.0 182 81.9
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 3.4e-71 272.3 195 74.9
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 1.7e-70 270.0 165 84.2
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 2.9e-70 269.2 195 73.3
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 2.9e-70 269.2 164 84.8
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 3.8e-70 268.9 165 83.6
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 3.8e-70 268.9 165 83.6
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 8.5e-70 267.7 165 83.0
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 4.2e-69 265.4 196 71.9
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 2.1e-68 263.1 197 71.1
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 8.2e-65 251.1 156 84.6
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 4.1e-64 248.8 204 67.2
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 1.3e-62 243.8 161 78.9
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 8.2e-57 224.6 165 74.5
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 9.1e-56 221.1 157 71.3
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 2.0e-55 219.9 157 69.4
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 3.5e-55 219.2 157 70.7
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 3.5e-55 219.2 157 69.4
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 7.7e-55 218.0 157 70.1
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 1.0e-54 217.6 157 68.8
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 1.3e-54 217.2 157 70.7
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.3e-54 217.2 157 70.1
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 1.7e-54 216.9 157 70.1
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 2.2e-54 216.5 157 68.2
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 2.9e-54 216.1 218 53.7
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 8.5e-54 214.5 157 68.8
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 1.5e-53 213.8 157 68.8
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.5e-53 213.8 157 68.8
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 1.9e-53 213.4 157 68.8
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.5e-53 213.0 218 54.1
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.5e-53 213.0 218 54.1
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 2.5e-53 213.0 157 68.8
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 3.2e-53 212.6 157 68.2
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 4.2e-53 212.2 157 67.5
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 5.5e-53 211.8 158 69.0
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 9.4e-53 211.1 157 66.2
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 9.4e-53 211.1 157 65.0
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 9.4e-53 211.1 157 67.5
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.2e-52 210.7 157 67.5
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.2e-52 210.7 157 67.5
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 1.2e-52 210.7 159 70.4
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.6e-52 210.3 189 57.1
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.6e-52 210.3 157 65.6
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 2.1e-52 209.9 157 67.5
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 2.1e-52 209.9 157 65.6
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 2.1e-52 209.9 157 66.9
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 2.7e-52 209.5 210 55.7
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 3.6e-52 209.1 157 66.2
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 3.6e-52 209.1 189 58.2
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 3.6e-52 209.1 162 64.2
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 4.7e-52 208.8 157 68.8
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 4.7e-52 208.8 157 68.8
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 4.7e-52 208.8 157 68.2
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 6.1e-52 208.4 157 68.2
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 6.1e-52 208.4 157 68.2
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 8.0e-52 208.0 157 68.2
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.4e-51 207.2 157 65.6
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 1.4e-51 207.2 157 65.0
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 2.3e-51 206.5 157 66.2
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 2.3e-51 206.5 157 65.6
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 2.3e-51 206.5 157 66.2
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 3.0e-51 206.1 160 68.1
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 3.0e-51 206.1 157 66.2
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 3.0e-51 206.1 157 66.2
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 4.0e-51 205.7 157 66.2
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 4.0e-51 205.7 160 69.4
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 5.2e-51 205.3 157 66.2
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 5.2e-51 205.3 157 65.6
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 5.2e-51 205.3 157 66.2
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 6.8e-51 204.9 188 55.9
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 6.8e-51 204.9 157 63.7
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 6.8e-51 204.9 157 65.0
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 1.2e-50 204.1 189 56.1
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.2e-50 204.1 157 63.7
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.2e-50 204.1 157 63.7
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.2e-50 204.1 157 65.6
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 1.2e-50 204.1 157 65.0
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 1.2e-50 204.1 157 65.6
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 1.5e-50 203.8 157 66.2
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 2.0e-50 203.4 157 65.6
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 2.0e-50 203.4 157 65.6
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 2.0e-50 203.4 157 63.7
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 2.0e-50 203.4 158 62.0
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 2.0e-50 203.4 158 67.7
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 2.6e-50 203.0 159 64.2
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 2.6e-50 203.0 157 65.6
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 4.4e-50 202.2 158 67.1
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 4.4e-50 202.2 189 57.1
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 5.7e-50 201.8 157 64.3
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 5.7e-50 201.8 159 63.5
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 7.5e-50 201.4 157 63.7
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 7.5e-50 201.4 158 62.7
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 7.5e-50 201.4 158 67.7
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 9.8e-50 201.1 157 65.0
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 1.3e-49 200.7 157 65.0
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 1.3e-49 200.7 157 65.6
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 1.7e-49 200.3 162 60.5
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 2.2e-49 199.9 157 63.7
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 2.2e-49 199.9 157 63.7
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 6.3e-49 198.4 158 63.3
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 6.3e-49 198.4 158 61.4
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 8.3e-49 198.0 189 55.0
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.1e-48 197.6 157 63.1
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 3.1e-48 196.1 173 57.2
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 3.1e-48 196.1 158 61.4
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 7.0e-48 194.9 160 66.9
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 9.1e-48 194.5 157 63.7
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.2e-47 194.1 158 60.1
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 1.6e-47 193.7 157 65.0
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 2.7e-47 193.0 161 61.5
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 3.5e-47 192.6 157 62.4
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 4.5e-47 192.2 157 61.8
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 4.5e-47 192.2 158 63.9
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 5.9e-47 191.8 157 62.4
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 7.7e-47 191.4 162 58.6
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 5.0e-46 188.7 189 52.9
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 1.2e-44 184.1 188 51.6
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 2.1e-44 183.3 155 57.4
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 1.8e-43 180.3 139 66.2
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 3.0e-43 179.5 190 51.6
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 3.4e-42 176.0 173 48.0
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 7.5e-42 174.9 142 65.5
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 9.8e-42 174.5 161 54.7
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 9.8e-42 174.5 173 50.3
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 6.3e-41 171.8 144 61.1
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 3.0e-30 136.3 157 43.3
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 6.2e-28 128.6 172 40.1
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 6.8e-27 125.2 157 47.1
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 5.8e-26 122.1 154 43.5
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 7.8e-23 111.7 68 79.4
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 8.6e-22 108.2 113 51.3
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 1.9e-16 90.5 58 79.3
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 3.9e-14 82.8 67 58.2
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 1.6e-12 77.4 65 60.0
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 1.8e-11 73.9 100 49.0
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 1.9e-08 63.9 60 61.7
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 2.7e-07 60.1 121 28.9


User provided reference genes

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