Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 4.6e-126 454.5 222 100.0
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 2.8e-123 445.3 223 98.7
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 7.4e-84 314.3 260 68.1
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 1.1e-82 310.5 264 67.0
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 1.0e-80 303.9 265 64.9
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 2.2e-80 302.8 267 64.4
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 2.2e-80 302.8 261 65.5
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 5.0e-80 301.6 264 64.8
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 5.0e-80 301.6 262 65.3
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 1.1e-79 300.4 267 63.7
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 2.1e-78 296.2 263 64.3
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 8.0e-78 294.3 263 63.9
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 1.1e-76 290.4 272 61.4
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 5.3e-74 281.6 260 59.6
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 2.0e-68 263.1 260 58.5
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 2.4e-58 229.6 240 60.0
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 2.0e-57 226.5 209 56.9
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 5.9e-57 224.9 189 59.8
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 5.9e-57 224.9 196 59.2
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 7.7e-57 224.6 200 60.0
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 1.3e-56 223.8 241 51.9
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.7e-56 223.4 241 51.9
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.7e-56 223.4 229 53.3
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 1.7e-56 223.4 248 51.6
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 3.8e-56 222.2 197 58.9
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 5.0e-56 221.9 196 58.7
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.1e-55 220.7 211 56.4
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.1e-55 220.7 211 56.4
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.1e-55 220.7 241 51.5
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.9e-55 219.9 227 54.2
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 1.9e-55 219.9 243 50.6
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 1.9e-55 219.9 245 51.4
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 4.3e-55 218.8 246 48.0
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 5.6e-55 218.4 231 57.6
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 9.5e-55 217.6 224 55.4
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 9.5e-55 217.6 243 49.8
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 9.5e-55 217.6 220 52.3
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 1.2e-54 217.2 192 58.3
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.6e-54 216.9 211 55.9
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.6e-54 216.9 211 55.9
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 1.6e-54 216.9 234 51.7
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 2.1e-54 216.5 218 52.8
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 3.6e-54 215.7 192 57.8
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 3.6e-54 215.7 189 56.6
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 3.6e-54 215.7 200 55.0
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 3.6e-54 215.7 200 55.5
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 6.1e-54 214.9 220 51.8
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 8.0e-54 214.5 234 50.0
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 8.0e-54 214.5 196 56.6
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 1.0e-53 214.2 257 50.2
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 1.0e-53 214.2 220 52.7
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 1.8e-53 213.4 189 58.2
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 2.3e-53 213.0 208 54.8
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 3.0e-53 212.6 249 50.2
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 4.0e-53 212.2 187 57.2
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 5.2e-53 211.8 255 50.2
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 5.2e-53 211.8 250 50.0
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 5.2e-53 211.8 250 50.0
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 5.2e-53 211.8 243 50.2
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 5.2e-53 211.8 204 56.9
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 6.8e-53 211.5 248 49.6
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 1.2e-52 210.7 213 54.9
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.5e-52 210.3 212 52.8
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 1.5e-52 210.3 237 49.8
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 2.6e-52 209.5 202 55.4
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 2.6e-52 209.5 252 46.8
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 3.4e-52 209.1 250 49.6
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 3.4e-52 209.1 201 54.7
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 3.4e-52 209.1 217 52.5
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 3.4e-52 209.1 200 57.5
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 4.4e-52 208.8 224 53.6
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 5.7e-52 208.4 248 48.4
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 7.5e-52 208.0 210 52.9
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 9.8e-52 207.6 198 55.1
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 9.8e-52 207.6 194 56.2
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.3e-51 207.2 195 56.9
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.3e-51 207.2 195 57.4
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.7e-51 206.8 201 54.2
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 1.7e-51 206.8 210 55.2
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 2.9e-51 206.1 249 48.2
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 2.9e-51 206.1 202 55.9
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 2.9e-51 206.1 202 55.9
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 3.7e-51 205.7 233 50.2
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 6.4e-51 204.9 212 52.8
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 1.4e-50 203.8 233 48.9
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 1.4e-50 203.8 200 54.0
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 2.4e-50 203.0 204 54.4
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 3.2e-50 202.6 215 51.2
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 9.2e-50 201.1 258 47.7
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.2e-49 200.7 228 50.0
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.6e-49 200.3 236 49.2
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 4.6e-49 198.7 195 52.8
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 4.6e-49 198.7 217 51.6
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 7.8e-49 198.0 208 51.4
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 1.3e-48 197.2 241 46.9
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 2.3e-48 196.4 214 52.3
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 1.2e-46 190.7 207 51.7
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.6e-46 190.3 229 48.5
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 2.8e-46 189.5 190 53.7
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 8.0e-46 188.0 259 44.0
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 1.0e-45 187.6 214 50.0
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 3.1e-45 186.0 267 41.2
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 6.8e-45 184.9 196 50.0
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 3.4e-44 182.6 199 51.8
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 7.5e-44 181.4 199 51.3
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 7.5e-44 181.4 199 51.3
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.3e-43 180.6 193 48.2
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 4.9e-43 178.7 168 54.2
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 2.0e-41 173.3 241 45.2
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 2.3e-40 169.9 201 48.3
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 3.0e-40 169.5 226 44.7
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 6.6e-40 168.3 243 44.4
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 1.4e-34 150.6 188 46.3
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 9.2e-34 147.9 234 40.6
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 9.2e-34 147.9 223 42.6
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 3.5e-33 146.0 123 65.0
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 4.6e-33 145.6 225 40.9
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 1.5e-31 140.6 211 50.2
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 1.6e-30 137.1 199 41.2
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 2.8e-30 136.3 141 50.4
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 5.2e-29 132.1 133 50.4
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 9.9e-28 127.9 177 45.8
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 1.7e-27 127.1 305 31.1
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 2.9e-27 126.3 168 42.9
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 7.1e-26 121.7 167 43.7
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 4.3e-23 112.5 128 50.8
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 2.8e-22 109.8 114 50.0
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 1.4e-21 107.5 114 49.1
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 1.2e-20 104.4 182 38.5
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 1.3e-19 100.9 225 34.7
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 1.1e-18 97.8 98 54.1
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 3.2e-18 96.3 178 40.4
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 4.6e-17 92.4 221 31.2
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-16 90.5 162 32.1
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 8.7e-16 88.2 54 66.7
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 8.1e-14 81.6 47 72.3
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 8.1e-14 81.6 47 70.2
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 2.0e-12 77.0 47 70.2
BcaNung05846 Brassica carinata HOM05D004336 ORTHO05D091150 6.0e-09 65.5 36 97.2
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 1.3e-08 64.3 38 65.8
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 6.7e-08 62.0 98 39.8
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 6.7e-08 62.0 98 39.8
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 6.7e-08 62.0 28 85.7
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 1.3e-06 57.8 27 85.2
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 1.3e-06 57.8 87 36.8
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.8e-06 56.6 27 81.5
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 3.6e-06 56.2 30 73.3


User provided reference genes

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