Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p45880 Brassica napus HOM05D004357 ORTHO05D005064 6.2e-64 247.7 124 100.0
A10p12380 Brassica napus HOM05D004357 ORTHO05D005064 3.8e-61 238.4 124 96.8
BraA10t43333Z Brassica rapa HOM05D004357 ORTHO05D005064 3.8e-61 238.4 124 96.8
BcaC04g20269 Brassica carinata HOM05D004357 ORTHO05D005064 1.0e-53 213.8 126 88.1
BolC9t57436H Brassica oleracea HOM05D004357 ORTHO05D005064 1.0e-53 213.8 126 88.1
BcaB08g35875 Brassica carinata HOM05D004357 ORTHO05D005064 5.7e-49 198.0 124 82.3
AL8G30610 Arabidopsis lyrata HOM05D004357 ORTHO05D005064 9.7e-49 197.2 126 76.2
Carub.0008s1540 Capsella rubella HOM05D004357 ORTHO05D005064 1.4e-47 193.4 127 77.2
Thhalv10014856m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 2.6e-46 189.1 95 89.5
Sp6g17040 Schrenkiella parvula HOM05D004357 ORTHO05D005064 1.7e-45 186.4 125 76.8
BraA02t06052Z Brassica rapa HOM05D002089 ORTHO05D002848 6.5e-45 184.5 129 72.9
BcaB05g22181 Brassica carinata HOM05D004357 ORTHO05D005064 8.5e-45 184.1 130 73.8
A02p09880 Brassica napus HOM05D002089 ORTHO05D002848 1.4e-44 183.3 126 73.0
C02p16430 Brassica napus HOM05D002089 ORTHO05D005064 9.4e-44 180.6 127 72.4
BolC2t07743H Brassica oleracea HOM05D002089 ORTHO05D005064 9.4e-44 180.6 127 72.4
AT5G55110 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 2.7e-43 179.1 126 71.4
BcaC03g14266 Brassica carinata HOM05D004357 ORTHO05D005064 3.6e-43 178.7 127 71.7
CARHR268450 Cardamine hirsuta HOM05D004357 ORTHO05D005064 5.1e-42 174.9 128 71.1
BcaC01g06348 Brassica carinata HOM05D004357 ORTHO05D005064 1.6e-30 136.7 129 59.7
BolC3t14083H Brassica oleracea HOM05D004357 ORTHO05D005064 3.5e-30 135.6 126 61.1
BcaC01g06347 Brassica carinata HOM05D004357 ORTHO05D005064 5.9e-30 134.8 129 59.7
A03p14260 Brassica napus HOM05D004357 ORTHO05D005064 6.5e-29 131.3 128 57.8
BraA03t10723Z Brassica rapa HOM05D004357 ORTHO05D005064 6.5e-29 131.3 128 57.8
BcaB01g04366 Brassica carinata HOM05D004357 ORTHO05D005064 1.1e-28 130.6 129 58.1
Aa31LG3G11030 Aethionema arabicum HOM05D004357 ORTHO05D005064 1.5e-28 130.2 125 57.6
A03p14230 Brassica napus HOM05D004357 ORTHO05D005064 2.6e-25 119.4 129 55.0
BraA03t10721Z Brassica rapa HOM05D000020 ORTHO05D002694 2.6e-25 119.4 129 55.0
Carub.0007s1397 Capsella rubella HOM05D004357 ORTHO05D005064 3.3e-25 119.0 120 57.5
BolC3t14084H Brassica oleracea HOM05D004357 ORTHO05D005064 7.5e-25 117.9 122 58.2
AT4G26880 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 6.3e-24 114.8 121 54.5
Thhalv10027097m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 3.1e-23 112.5 120 55.0
CARHR234490 Cardamine hirsuta HOM05D004357 ORTHO05D005064 1.6e-22 110.2 120 55.8
Sp7g24830 Schrenkiella parvula HOM05D004357 ORTHO05D005064 2.7e-22 109.4 82 65.9
BraA01t01764Z Brassica rapa HOM05D004357 ORTHO05D005064 2.2e-21 106.3 120 50.0
BcaNung03559 Brassica carinata HOM05D004357 ORTHO05D005064 2.9e-21 105.9 120 53.3
THA.LOC104811623 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 2.5e-20 102.8 120 51.7
Aa31LG5G12090 Aethionema arabicum HOM05D002991 ORTHO05D003480 9.4e-20 100.9 117 50.4
C01p23050 Brassica napus HOM05D004357 ORTHO05D005064 2.7e-19 99.4 120 50.8
BolC1t02239H Brassica oleracea HOM05D004357 ORTHO05D005064 2.7e-19 99.4 120 50.8
THA.LOC104817674 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 2.0e-17 93.2 120 50.8
Carub.0001s3975 Capsella rubella HOM05D004357 ORTHO05D005064 5.7e-17 91.7 76 60.5
BcaC01g06349 Brassica carinata HOM05D004357 ORTHO05D005064 9.8e-17 90.9 118 50.8
Sc07g0002830 Simmondsia chinensis HOM05D004357 ORTHO05D005064 1.7e-16 90.1 127 47.2
A01p18090 Brassica napus HOM05D004357 ORTHO05D005064 3.7e-16 89.0 57 66.7
THA.LOC104798766 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 6.3e-16 88.2 123 45.5
A06p02900 Brassica napus HOM05D004357 ORTHO05D005064 8.3e-16 87.8 76 57.9
Cpa.g.sc12.272 Carica papaya HOM05D004357 ORTHO05D005064 8.3e-16 87.8 91 50.5
BcaC08g43251 Brassica carinata HOM05D004357 ORTHO05D005064 1.1e-15 87.4 75 58.7
C06p05970 Brassica napus HOM05D004357 ORTHO05D005064 1.1e-15 87.4 75 58.7
BolC6t35710H Brassica oleracea HOM05D004357 ORTHO05D005064 1.1e-15 87.4 75 58.7
BraA06t23496Z Brassica rapa HOM05D004357 ORTHO05D005064 1.1e-15 87.4 76 57.9
Sopen06g029590 Solanum pennellii HOM05D007023 ORTHO05D008684 1.1e-15 87.4 121 43.8
PGSC0003DMG400007032 Solanum tuberosum HOM05D004357 ORTHO05D005064 3.1e-15 85.9 111 49.5
HanXRQChr17g0546371 Helianthus annuus HOM05D004357 ORTHO05D005064 4.1e-15 85.5 121 45.5
AT1G50720 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 7.0e-15 84.7 115 46.1
Nitab4.5_0002598g0090 Nicotiana tabacum HOM05D004357 ORTHO05D005064 1.6e-14 83.6 122 44.3
Gohir.A01G082600 Gossypium hirsutum HOM05D004357 ORTHO05D005064 2.0e-14 83.2 126 45.2
Solyc06g073220.1 Solanum lycopersicum HOM05D004357 ORTHO05D005064 2.0e-14 83.2 121 42.1
BcaB07g33511 Brassica carinata HOM05D004357 ORTHO05D005064 2.7e-14 82.8 117 41.9
Lsat_1_v5_gn_7_114381 Lactuca sativa HOM05D004357 ORTHO05D005064 2.7e-14 82.8 119 47.1
CARHR040820 Cardamine hirsuta HOM05D004357 ORTHO05D005064 3.5e-14 82.4 119 44.5
Lsat_1_v5_gn_2_77680 Lactuca sativa HOM05D004357 ORTHO05D005064 4.5e-14 82.0 119 45.4
Gorai.002G091500 Gossypium raimondii HOM05D004357 ORTHO05D005064 5.9e-14 81.6 126 44.4
Sopen05g029140 Solanum pennellii HOM05D004357 ORTHO05D005064 5.9e-14 81.6 121 44.6
Gohir.D01G069200 Gossypium hirsutum HOM05D004357 ORTHO05D005064 7.7e-14 81.3 122 45.9
Thhalv10012189m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 1.0e-13 80.9 125 45.6
Nitab4.5_0004983g0010 Nicotiana tabacum HOM05D004357 ORTHO05D005064 1.3e-13 80.5 122 45.1
CAN.G112.17 Capsicum annuum HOM05D004357 ORTHO05D005064 1.7e-13 80.1 122 44.3
Lsat_1_v5_gn_3_15001 Lactuca sativa HOM05D004357 ORTHO05D005064 2.2e-13 79.7 121 43.8
Lsat_1_v5_gn_9_92180 Lactuca sativa HOM05D004357 ORTHO05D005064 2.2e-13 79.7 71 60.6
PGSC0003DMG402027015 Solanum tuberosum HOM05D004357 ORTHO05D005064 2.2e-13 79.7 101 45.5
Ciclev10010614m.g Citrus clementina HOM05D004357 ORTHO05D005064 2.9e-13 79.3 116 47.4
Lj8C171T1 Lonicera japonica HOM05D004357 ORTHO05D005064 2.9e-13 79.3 73 57.5
Manes.15G068600 Manihot esculenta HOM05D004357 ORTHO05D005064 2.9e-13 79.3 123 42.3
DCAR_022585 Daucus carota HOM05D004357 ORTHO05D005064 3.8e-13 79.0 116 43.1
SalBow1G5576 Salvia bowleyana HOM05D004357 ORTHO05D005064 3.8e-13 79.0 115 43.5
Solyc05g050730.1 Solanum lycopersicum HOM05D004357 ORTHO05D005064 5.0e-13 78.6 121 44.6
DCAR_016717 Daucus carota HOM05D004357 ORTHO05D005064 6.5e-13 78.2 73 54.8
Sc16g0005860 Simmondsia chinensis HOM05D004357 ORTHO05D005064 6.5e-13 78.2 116 42.2
HanXRQChr11g0334081 Helianthus annuus HOM05D004357 ORTHO05D005064 8.5e-13 77.8 73 58.9
TWI39G1080 Tripterygium wilfordii HOM05D004357 ORTHO05D005064 8.5e-13 77.8 135 40.0
ECA236G2715 Erigeron canadensis HOM05D004357 ORTHO05D005064 1.1e-12 77.4 73 58.9
Sp1g37560 Schrenkiella parvula HOM05D004357 ORTHO05D005064 1.1e-12 77.4 73 56.2
FAN16G2316 Fragaria x ananassa HOM05D004357 ORTHO05D005064 1.9e-12 76.6 73 53.4
HanXRQChr13g0408531 Helianthus annuus HOM05D004357 ORTHO05D005064 1.9e-12 76.6 71 62.0
Nitab4.5_0011467g0070 Nicotiana tabacum HOM05D004357 ORTHO05D005064 1.9e-12 76.6 121 43.0
HanXRQChr03g0076711 Helianthus annuus HOM05D004357 ORTHO05D005064 2.5e-12 76.3 71 59.2
CANSAT11G1041 Cannabis sativa HOM05D004357 ORTHO05D005064 3.2e-12 75.9 124 37.9
Lsat_1_v5_gn_7_114360 Lactuca sativa HOM05D004357 ORTHO05D005064 3.2e-12 75.9 121 42.1
MD03G1197000 Malus domestica HOM05D004357 ORTHO05D005064 5.5e-12 75.1 76 48.7
Phvul.006G047200 Phaseolus vulgaris HOM05D004357 ORTHO05D005064 5.5e-12 75.1 73 56.2
FAN21G0700 Fragaria x ananassa HOM05D004357 ORTHO05D005064 7.2e-12 74.7 126 38.1
FAN25G0038 Fragaria x ananassa HOM05D004357 ORTHO05D005064 7.2e-12 74.7 126 38.1
Atru.chr2.3491 Acer truncatum HOM05D004357 ORTHO05D005064 9.5e-12 74.3 75 50.7
FvH4_3g23190 Fragaria vesca HOM05D004357 ORTHO05D005064 9.5e-12 74.3 126 38.1
FAN11G2993 Fragaria x ananassa HOM05D004357 ORTHO05D005064 9.5e-12 74.3 126 38.1
FAN25G2170 Fragaria x ananassa HOM05D004357 ORTHO05D005064 9.5e-12 74.3 126 38.1
QL08p009100 Quercus lobata HOM05D004357 ORTHO05D005064 9.5e-12 74.3 134 40.3
Cc05_g14030 Coffea canephora HOM05D004357 ORTHO05D005064 1.2e-11 73.9 116 45.7
Duzib213G0508 Durio zibethinus HOM05D004357 ORTHO05D005064 2.1e-11 73.2 128 42.2
ECA236G1539 Erigeron canadensis HOM05D004357 ORTHO05D005064 2.1e-11 73.2 126 42.9
Dinv40782 Davidia involucrata HOM05D001348 ORTHO05D008393 2.7e-11 72.8 138 38.4
Eucgr.F00736 Eucalyptus grandis HOM05D004357 ORTHO05D005064 2.7e-11 72.8 129 40.3
RcHm_v2.0_Chr5g0040831 Rosa chinensis HOM05D004357 ORTHO05D005064 3.6e-11 72.4 126 37.3
VMungo0540G0503 Vigna mungo HOM05D004357 ORTHO05D005064 3.6e-11 72.4 73 53.4
MD11G1213000 Malus domestica HOM05D004357 ORTHO05D005064 4.7e-11 72.0 133 38.3
COL.COLO4_09694 Corchorus olitorius HOM05D004357 ORTHO05D005064 6.1e-11 71.6 76 53.9
Nitab4.5_0012195g0010 Nicotiana tabacum HOM05D004357 ORTHO05D005064 6.1e-11 71.6 122 41.8
CiPaw.12G131900 Carya illinoinensis HOM05D004357 ORTHO05D005064 8.0e-11 71.2 133 39.8
Duzib170G0654 Durio zibethinus HOM05D004357 ORTHO05D005064 8.0e-11 71.2 138 42.0
PSO135G0247 Papaver somniferum HOM05D004357 ORTHO05D005064 1.4e-10 70.5 73 49.3
Glyma.18G092400 Glycine max HOM05D004357 ORTHO05D005064 1.8e-10 70.1 127 44.9
Lalb_Chr20g0115381 Lupinus albus HOM05D004357 ORTHO05D005064 1.8e-10 70.1 129 37.2
Nitab4.5_0011467g0030 Nicotiana tabacum HOM05D004357 ORTHO05D005064 1.8e-10 70.1 125 36.8
AUR62020395 Chenopodium quinoa HOM05D004357 ORTHO05D005064 3.0e-10 69.3 73 52.1
Oeu028003.1 Olea europaea HOM05D004357 ORTHO05D005064 3.0e-10 69.3 68 54.4
SGA_v2.0_scaffold12G06084 Striga asiatica HOM05D004357 ORTHO05D005064 3.0e-10 69.3 121 38.8
Sabra16G0234300 Salix brachista HOM05D004357 ORTHO05D005064 6.8e-10 68.2 128 38.3
Sabra16G0234600 Salix brachista HOM05D004357 ORTHO05D005064 6.8e-10 68.2 128 38.3
AUR62020397 Chenopodium quinoa HOM05D004357 ORTHO05D005064 8.8e-10 67.8 73 50.7
Oeu039200.1 Olea europaea HOM05D004357 ORTHO05D005064 8.8e-10 67.8 111 39.6
AUR62015821 Chenopodium quinoa HOM05D004357 ORTHO05D005064 1.2e-09 67.4 73 50.7
Migut.K00212 Erythranthe guttata HOM05D004357 ORTHO05D005064 1.2e-09 67.4 122 41.0
Medtr3g053240 Medicago truncatula HOM05D004357 ORTHO05D005064 1.2e-09 67.4 127 36.2
Manes.03G133800 Manihot esculenta HOM05D004357 ORTHO05D005064 1.5e-09 67.0 125 39.2
Potri.001G356600 Populus trichocarpa HOM05D004357 ORTHO05D005064 2.0e-09 66.6 127 40.2
TAR627G1104 Trochodendron aralioides HOM05D004357 ORTHO05D005064 2.0e-09 66.6 73 49.3
Glyma.08G320000 Glycine max HOM05D004357 ORTHO05D005064 2.6e-09 66.2 130 39.2
PSO541G4299 Papaver somniferum HOM05D004357 ORTHO05D005064 3.4e-09 65.9 138 35.5
Potri.011G080800 Populus trichocarpa HOM05D004357 ORTHO05D005064 3.4e-09 65.9 136 36.0
TPR.G14428 Trifolium pratense HOM05D004357 ORTHO05D005064 3.4e-09 65.9 128 37.5
CsaV3_3G004660 Cucumis sativus L. HOM05D004357 ORTHO05D005064 4.4e-09 65.5 128 35.2
Psat5g173760 Pisum sativum HOM05D004357 ORTHO05D005064 4.4e-09 65.5 121 38.8
PGR083G1129 Punica granatum HOM05D004357 ORTHO05D005064 5.7e-09 65.1 133 38.3
Ah.06g182580 Amaranthus hybridus HOM05D004357 ORTHO05D005064 9.8e-09 64.3 122 40.2
AUR62015824 Chenopodium quinoa HOM05D004357 ORTHO05D005064 1.7e-08 63.5 73 43.8
Ca_03254_v3 Cicer arietinum L. HOM05D004357 ORTHO05D005064 1.7e-08 63.5 125 36.8
ClCG10G005000 Citrullus lanatus HOM05D004357 ORTHO05D005064 1.7e-08 63.5 124 33.9
MELO3C014164.2 Cucumis melo HOM05D004357 ORTHO05D005064 1.7e-08 63.5 128 35.9
Lj6g0017870 Lotus japonicus HOM05D004357 ORTHO05D005064 2.2e-08 63.2 134 38.8
AUR62020394 Chenopodium quinoa HOM05D004357 ORTHO05D005064 2.8e-08 62.8 73 43.8
AUR62015823 Chenopodium quinoa HOM05D004357 ORTHO05D005064 4.9e-08 62.0 125 36.8
Thecc.07G032000 Theobroma cacao HOM05D004357 ORTHO05D005064 4.9e-08 62.0 130 36.9
Lj6g0011908 Lotus japonicus HOM05D004357 ORTHO05D005064 6.3e-08 61.6 133 37.6
Medtr4g044463 Medicago truncatula HOM05D004357 ORTHO05D005064 8.3e-08 61.2 128 35.9
Actinidia35360 Actinidia chinensis HOM05D004357 ORTHO05D005064 4.1e-07 58.9 124 34.7
AUR62020398 Chenopodium quinoa HOM05D004357 ORTHO05D005064 4.1e-07 58.9 122 39.3
PSO541G1695 Papaver somniferum HOM05D004357 ORTHO05D005064 7.0e-07 58.2 137 31.4
Sed0014123 Sechium edule HOM05D004357 ORTHO05D005064 1.6e-06 57.0 70 41.4
Peaxi162Scf00126g00115 Petunia axillaris HOM05D004357 ORTHO05D005064 3.5e-06 55.8 114 35.1
Aqoxy1G03059 Aquilegia oxysepala HOM05D004357 ORTHO05D005064 4.5e-06 55.5 133 33.8
TPR.G14421 Trifolium pratense HOM05D004357 ORTHO05D005064 4.5e-06 55.5 120 35.8
arahy.Tifrunner.gnm1.ann1.DG0M13 Arachis hypogaea HOM05D002014 ORTHO05D001958 7.7e-06 54.7 70 44.3
BcaB01g04367 Brassica carinata HOM05D004357 ORTHO05D005064 7.7e-06 54.7 30 73.3


User provided reference genes

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