Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p45870 Brassica napus HOM05D007124 ORTHO05D008980 4.1e-75 284.6 144 100.0
BraA10t43334Z Brassica rapa HOM05D007124 ORTHO05D008980 3.0e-54 215.3 150 80.7
A10p12390 Brassica napus HOM05D007124 ORTHO05D008980 1.2e-53 213.4 144 80.6
BcaB08g35876 Brassica carinata HOM05D007124 ORTHO05D008980 6.0e-34 147.9 78 94.9
BcaC04g20268 Brassica carinata HOM05D007124 ORTHO05D008980 1.0e-33 147.1 78 94.9
BolC9t57437H Brassica oleracea HOM05D007124 ORTHO05D008980 1.0e-33 147.1 78 94.9
Sp6g17060 Schrenkiella parvula HOM05D007124 ORTHO05D008980 3.9e-33 145.2 79 93.7
BcaC03g14263 Brassica carinata HOM05D007124 ORTHO05D008980 3.3e-32 142.1 78 91.0
BolC2t07742H Brassica oleracea HOM05D007124 ORTHO05D008980 3.3e-32 142.1 78 91.0
A02p09870 Brassica napus HOM05D007124 ORTHO05D008980 7.3e-32 141.0 96 77.1
BraA02t06051Z Brassica rapa HOM05D007124 ORTHO05D008980 7.3e-32 141.0 78 91.0
C02p16400 Brassica napus HOM05D007124 ORTHO05D008980 2.8e-31 139.0 77 89.6
AL8G30630 Arabidopsis lyrata HOM05D007124 ORTHO05D008980 4.0e-30 135.2 78 87.2
AT5G55125 Arabidopsis thaliana HOM05D007124 ORTHO05D008980 4.0e-30 135.2 78 87.2
Thhalv10015372m.g Eutrema salsugineum HOM05D007124 ORTHO05D008980 2.0e-29 132.9 78 87.2
Carub.0008s1542 Capsella rubella HOM05D007124 ORTHO05D008980 2.6e-29 132.5 78 85.9
CARHR268480 Cardamine hirsuta HOM05D007124 ORTHO05D008980 4.4e-29 131.7 78 85.9
Aa31LG3G11120 Aethionema arabicum HOM05D007124 ORTHO05D008980 1.1e-27 127.1 78 84.6
THA.LOC104811625 Tarenaya hassleriana HOM05D007124 ORTHO05D008980 1.3e-25 120.2 78 76.9
Hma1.2p1_0036F.1_g023250 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 1.9e-24 116.3 64 84.4
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 2.5e-24 115.9 72 73.6
CSS0008346 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 2.5e-24 115.9 64 82.8
CSS0015017 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 2.5e-24 115.9 64 82.8
CSS0017817 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 2.5e-24 115.9 64 82.8
Oeu013124.1 Olea europaea HOM05D007124 ORTHO05D008980 5.6e-24 114.8 68 80.9
PGR004G2244 Punica granatum HOM05D007124 ORTHO05D008980 5.6e-24 114.8 77 75.3
CSS0011277 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 7.3e-24 114.4 64 81.2
Hma1.2p1_1332F.1_g276070 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 7.3e-24 114.4 64 82.8
Nitab4.5_0000755g0100 Nicotiana tabacum HOM05D007124 ORTHO05D008980 9.6e-24 114.0 64 84.4
Peaxi162Scf00040g00004 Petunia axillaris HOM05D007124 ORTHO05D008980 9.6e-24 114.0 64 84.4
Cpa.g.sc12.260 Carica papaya HOM05D007124 ORTHO05D008980 1.2e-23 113.6 68 76.5
CiPaw.12G132500 Carya illinoinensis HOM05D007124 ORTHO05D008980 1.2e-23 113.6 69 75.4
Nitab4.5_0010969g0020 Nicotiana tabacum HOM05D007124 ORTHO05D008980 1.2e-23 113.6 64 82.8
Manes.12G070300 Manihot esculenta HOM05D007124 ORTHO05D008980 1.6e-23 113.2 64 78.1
Sopen11g027200 Solanum pennellii HOM05D007124 ORTHO05D008980 1.6e-23 113.2 64 82.8
PGSC0003DMG400026339 Solanum tuberosum HOM05D007124 ORTHO05D008980 1.6e-23 113.2 64 82.8
Actinidia32270 Actinidia chinensis HOM05D002089 ORTHO05D002848 2.1e-23 112.8 64 79.7
Lsat_1_v5_gn_5_3160 Lactuca sativa HOM05D007124 ORTHO05D008980 2.1e-23 112.8 64 79.7
BcaB05g22183 Brassica carinata HOM05D007124 ORTHO05D008980 2.8e-23 112.5 64 89.1
CiPaw.11G193400 Carya illinoinensis HOM05D007124 ORTHO05D008980 2.8e-23 112.5 69 73.9
Ciclev10009664m.g Citrus clementina HOM05D007124 ORTHO05D008980 2.8e-23 112.5 100 61.0
Sabra16G0198600 Salix brachista HOM05D007124 ORTHO05D008980 2.8e-23 112.5 62 82.3
Eucgr.F00713 Eucalyptus grandis HOM05D007124 ORTHO05D008980 4.7e-23 111.7 64 81.2
Ciclev10010691m.g Citrus clementina HOM05D007124 ORTHO05D008980 6.2e-23 111.3 68 73.5
Migut.H01802 Erythranthe guttata HOM05D007124 ORTHO05D008980 6.2e-23 111.3 64 82.8
Cfa020296 Carpinus fangiana HOM05D007124 ORTHO05D008980 1.4e-22 110.2 64 79.7
Potri.001G314100 Populus trichocarpa HOM05D007124 ORTHO05D008980 1.4e-22 110.2 64 78.1
Sed0025305 Sechium edule HOM05D007124 ORTHO05D008980 1.4e-22 110.2 64 79.7
Medtr2g014910 Medicago truncatula HOM05D007124 ORTHO05D008980 3.1e-22 109.0 70 74.3
SGA_v2.0_scaffold363G49951 Striga asiatica HOM05D007124 ORTHO05D008980 3.1e-22 109.0 71 74.6
Haze_09723 Corylus avellana HOM05D007124 ORTHO05D008980 4.0e-22 108.6 64 78.1
Nn1g07252 Nelumbo nucifera HOM05D007124 ORTHO05D008980 4.0e-22 108.6 64 78.1
CANSAT11G2294 Cannabis sativa HOM05D007124 ORTHO05D008980 5.2e-22 108.2 61 77.0
FAN21G2784 Fragaria x ananassa HOM05D007124 ORTHO05D008980 6.9e-22 107.8 69 71.0
Medtr2g014940 Medicago truncatula HOM05D007124 ORTHO05D008980 6.9e-22 107.8 66 77.3
QL08p007019 Quercus lobata HOM05D007124 ORTHO05D008980 9.0e-22 107.5 64 76.6
FvH4_3g23350 Fragaria vesca HOM05D007124 ORTHO05D008980 1.2e-21 107.1 60 76.7
Sc12g0005860 Simmondsia chinensis HOM05D007124 ORTHO05D008980 1.2e-21 107.1 68 77.9
SGA_v2.0_scaffold120G32846 Striga asiatica HOM05D007124 ORTHO05D008980 1.2e-21 107.1 69 76.8
Lalb_Chr15g0089611 Lupinus albus HOM05D007124 ORTHO05D008980 1.5e-21 106.7 64 76.6
Lalb_Chr18g0059321 Lupinus albus HOM05D007124 ORTHO05D008980 1.5e-21 106.7 64 76.6
Psat0s3039g0080 Pisum sativum HOM05D007124 ORTHO05D008980 1.5e-21 106.7 64 78.1
TWI39G0219 Tripterygium wilfordii HOM05D007124 ORTHO05D008980 2.0e-21 106.3 64 78.1
FAN02G4031 Fragaria x ananassa HOM05D007124 ORTHO05D008980 2.6e-21 105.9 60 75.0
FAN05G4905 Fragaria x ananassa HOM05D007124 ORTHO05D008980 2.6e-21 105.9 60 75.0
FAN11G2242 Fragaria x ananassa HOM05D007124 ORTHO05D008980 2.6e-21 105.9 60 75.0
FAN16G3348 Fragaria x ananassa HOM05D007124 ORTHO05D008980 2.6e-21 105.9 60 75.0
FAN25G2055 Fragaria x ananassa HOM05D007124 ORTHO05D008980 2.6e-21 105.9 60 75.0
Glyma.10G051000 Glycine max HOM05D007124 ORTHO05D008980 2.6e-21 105.9 64 76.6
RcHm_v2.0_Chr5g0041121 Rosa chinensis HOM05D007124 ORTHO05D008980 2.6e-21 105.9 60 75.0
Ca_00376_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 3.4e-21 105.5 66 74.2
Ca_00400_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 3.4e-21 105.5 66 74.2
Glyma.13G138500 Glycine max HOM05D007124 ORTHO05D008980 3.4e-21 105.5 64 76.6
Glyma.13G152338 Glycine max HOM05D007124 ORTHO05D008980 3.4e-21 105.5 64 76.6
Lj6g0008322 Lotus japonicus HOM05D007124 ORTHO05D008980 3.4e-21 105.5 64 76.6
Phvul.006G180400 Phaseolus vulgaris HOM05D007124 ORTHO05D008980 4.4e-21 105.1 63 76.2
Aqoxy1G03004 Aquilegia oxysepala HOM05D007124 ORTHO05D008980 5.8e-21 104.8 64 71.9
Prupe.4G220900 Prunus persica HOM05D007124 ORTHO05D008980 5.8e-21 104.8 68 70.6
arahy.Tifrunner.gnm1.ann1.902QMU Arachis hypogaea HOM05D007124 ORTHO05D008980 7.6e-21 104.4 64 75.0
Os11g0516100 Oryza sativa ssp. japonica HOM05D007124 ORTHO05D008980 7.6e-21 104.4 64 71.9
HPP92_015305 Vanilla planifolia HOM05D007124 ORTHO05D008980 7.6e-21 104.4 63 74.6
ATR0317G094 Amborella trichopoda HOM05D007124 ORTHO05D008980 9.9e-21 104.0 68 70.6
arahy.Tifrunner.gnm1.ann1.E6QS8A Arachis hypogaea HOM05D007124 ORTHO05D008980 1.7e-20 103.2 64 73.4
MBI15_g24201_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 1.7e-20 103.2 66 74.2
EL10Ac7g17641 Beta vulgaris HOM05D007124 ORTHO05D008980 2.2e-20 102.8 64 73.4
Psat1g201480 Pisum sativum HOM05D007124 ORTHO05D008980 2.2e-20 102.8 64 75.0
DCAR_009645 Daucus carota HOM05D007124 ORTHO05D008980 2.9e-20 102.4 64 73.4
MBI08_g04916_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 3.8e-20 102.1 66 72.7
SHI10538 Sapria himalayana HOM05D007124 ORTHO05D008980 3.8e-20 102.1 69 72.5
FvH4_6g31480 Fragaria vesca HOM05D007124 ORTHO05D008980 4.9e-20 101.7 60 73.3
AUR62008759 Chenopodium quinoa HOM05D007124 ORTHO05D008980 6.4e-20 101.3 70 71.4
AUR62025479 Chenopodium quinoa HOM05D007124 ORTHO05D008980 6.4e-20 101.3 70 71.4
Duzib170G0848 Durio zibethinus HOM05D007124 ORTHO05D008980 6.4e-20 101.3 76 67.1
Duzib213G1022 Durio zibethinus HOM05D007124 ORTHO05D008980 6.4e-20 101.3 76 67.1
Ah.15g092770 Amaranthus hybridus HOM05D007124 ORTHO05D008980 8.4e-20 100.9 70 71.4
Gohir.1Z049637 Gossypium hirsutum HOM05D007124 ORTHO05D008980 2.4e-19 99.4 69 66.7
Gohir.D05G373400 Gossypium hirsutum HOM05D007124 ORTHO05D008980 2.4e-19 99.4 68 67.6
Gorai.009G442100 Gossypium raimondii HOM05D007124 ORTHO05D008980 2.4e-19 99.4 68 67.6
Thecc.07G030700 Theobroma cacao HOM05D007124 ORTHO05D008980 4.2e-19 98.6 69 68.1
PSO675G6679 Papaver somniferum HOM05D007124 ORTHO05D008980 1.2e-18 97.1 66 66.7
Cc05_g14150 Coffea canephora HOM05D007124 ORTHO05D008980 3.5e-18 95.5 68 64.7
Solyc11g068490.1 Solanum lycopersicum HOM05D007124 ORTHO05D008980 3.5e-18 95.5 56 80.4
vmacro13375 Vaccinium macrocarpon HOM05D007124 ORTHO05D008980 6.0e-18 94.7 64 68.8
MELO3C004505.2 Cucumis melo HOM05D007124 ORTHO05D008980 7.8e-18 94.4 77 57.1
Glyma.10G069200 Glycine max HOM05D007124 ORTHO05D008980 2.3e-17 92.8 62 71.0
HanXRQChr08g0233551 Helianthus annuus HOM05D007124 ORTHO05D008980 3.9e-17 92.0 70 65.7
Sabra16G0233800 Salix brachista HOM05D000336 ORTHO05D000593 3.9e-17 92.0 54 77.8
ECA246G4235 Erigeron canadensis HOM05D007124 ORTHO05D008980 5.1e-17 91.7 50 82.0
CsaV3_2G002880 Cucumis sativus L. HOM05D007124 ORTHO05D008980 7.3e-16 87.8 64 62.5
MD03G1195200 Malus domestica HOM05D007124 ORTHO05D008980 3.6e-15 85.5 60 70.0
unitig_0.g1624 Utricularia gibba HOM05D007124 ORTHO05D008980 1.4e-06 57.0 45 60.0
Mapoly0141s0007 Marchantia polymorpha HOM05D007124 ORTHO05D008980 2.4e-06 56.2 58 41.4


User provided reference genes

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