Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 1.1e-54 216.5 111 100.0
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 1.1e-54 216.5 111 100.0
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 1.1e-54 216.5 111 100.0
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 1.4e-54 216.1 110 100.0
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 9.9e-53 209.9 111 99.1
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 9.9e-53 209.9 111 99.1
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 4.1e-51 204.5 111 96.4
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 5.4e-51 204.1 111 95.5
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 1.2e-50 203.0 111 94.6
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 7.8e-50 200.3 111 93.7
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 1.0e-49 199.9 111 92.8
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 3.9e-49 198.0 111 92.8
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 8.7e-49 196.8 111 91.9
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 1.9e-48 195.7 111 91.9
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 1.9e-48 195.7 111 93.7
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 2.5e-48 195.3 111 91.0
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 4.3e-48 194.5 111 91.0
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 7.3e-48 193.7 111 91.0
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 1.5e-45 186.0 112 89.3
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 5.6e-40 167.5 112 77.7
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 2.1e-39 165.6 104 79.8
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 6.2e-39 164.1 100 87.0
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 2.4e-38 162.2 100 86.0
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 3.8e-36 154.8 109 67.9
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 1.9e-35 152.5 102 73.5
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 4.2e-35 151.4 84 95.2
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 9.3e-35 150.2 108 69.4
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 1.2e-34 149.8 108 68.5
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 1.2e-34 149.8 108 70.4
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 1.6e-34 149.4 100 76.0
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 2.1e-34 149.1 108 66.7
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 2.1e-34 149.1 108 70.4
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 2.1e-34 149.1 108 68.5
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 2.7e-34 148.7 100 76.0
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 3.5e-34 148.3 106 70.8
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 4.6e-34 147.9 108 67.6
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 4.6e-34 147.9 107 72.0
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 6.0e-34 147.5 82 91.5
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 6.0e-34 147.5 102 71.6
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 6.0e-34 147.5 109 69.7
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 6.0e-34 147.5 102 69.6
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 6.0e-34 147.5 109 69.7
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 7.9e-34 147.1 111 66.7
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.0e-33 146.7 108 66.7
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 1.0e-33 146.7 107 67.3
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.3e-33 146.4 108 66.7
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 1.3e-33 146.4 104 68.3
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 1.3e-33 146.4 102 68.6
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 1.3e-33 146.4 108 69.4
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 1.8e-33 146.0 111 66.7
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.8e-33 146.0 107 68.2
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 1.8e-33 146.0 108 64.8
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 1.8e-33 146.0 108 65.7
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 2.3e-33 145.6 109 67.0
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 2.3e-33 145.6 107 66.4
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 2.3e-33 145.6 108 69.4
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 2.3e-33 145.6 108 68.5
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 2.3e-33 145.6 111 64.9
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 2.3e-33 145.6 102 67.6
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 3.0e-33 145.2 108 65.7
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 3.0e-33 145.2 108 64.8
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 3.0e-33 145.2 108 68.5
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 3.0e-33 145.2 108 66.7
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 3.0e-33 145.2 102 70.6
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 3.9e-33 144.8 108 70.4
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 3.9e-33 144.8 111 64.0
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 3.9e-33 144.8 103 67.0
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 3.9e-33 144.8 108 64.8
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 5.1e-33 144.4 106 70.8
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 5.1e-33 144.4 111 66.7
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 5.1e-33 144.4 99 69.7
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 5.1e-33 144.4 111 65.8
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 5.1e-33 144.4 106 69.8
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 5.1e-33 144.4 111 64.0
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 5.1e-33 144.4 111 64.0
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 5.1e-33 144.4 111 64.0
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 5.1e-33 144.4 111 64.0
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 5.1e-33 144.4 107 67.3
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 5.1e-33 144.4 111 64.0
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 5.1e-33 144.4 109 68.8
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 6.7e-33 144.1 108 64.8
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 8.7e-33 143.7 111 64.9
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 8.7e-33 143.7 109 67.0
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 1.1e-32 143.3 108 65.7
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.1e-32 143.3 107 67.3
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 1.1e-32 143.3 107 70.1
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.5e-32 142.9 108 65.7
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 1.5e-32 142.9 107 65.4
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 1.9e-32 142.5 109 65.1
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 1.9e-32 142.5 103 68.9
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 1.9e-32 142.5 103 66.0
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 2.5e-32 142.1 103 66.0
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 3.3e-32 141.7 111 64.0
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 3.3e-32 141.7 107 67.3
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 3.3e-32 141.7 108 66.7
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 4.3e-32 141.4 108 64.8
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 4.3e-32 141.4 103 67.0
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 5.6e-32 141.0 111 65.8
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 7.4e-32 140.6 108 64.8
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 7.4e-32 140.6 107 67.3
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 9.6e-32 140.2 107 66.4
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 1.3e-31 139.8 111 63.1
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 1.3e-31 139.8 107 64.5
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 1.3e-31 139.8 106 62.3
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 1.6e-31 139.4 99 69.7
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.6e-31 139.4 108 63.9
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.6e-31 139.4 108 63.9
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.6e-31 139.4 107 67.3
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 2.1e-31 139.0 107 66.4
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 2.8e-31 138.7 107 63.6
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 4.8e-31 137.9 99 67.7
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 4.8e-31 137.9 103 64.1
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 4.8e-31 137.9 107 64.5
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 4.8e-31 137.9 107 64.5
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 4.8e-31 137.9 105 66.7
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 4.8e-31 137.9 106 62.3
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 4.8e-31 137.9 98 71.4
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 6.2e-31 137.5 107 67.3
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 8.1e-31 137.1 107 65.4
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 1.1e-30 136.7 105 65.7
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 1.4e-30 136.3 107 63.6
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 1.4e-30 136.3 107 63.6
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 1.8e-30 136.0 107 65.4
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 1.8e-30 136.0 103 64.1
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 1.8e-30 136.0 99 67.7
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 2.4e-30 135.6 106 66.0
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 3.1e-30 135.2 106 65.1
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 3.1e-30 135.2 105 65.7
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 5.3e-30 134.4 103 67.0
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 9.0e-30 133.7 99 67.7
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 2.0e-29 132.5 99 66.7
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 3.4e-29 131.7 99 64.6
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 3.4e-29 131.7 99 65.7
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 7.6e-29 130.6 102 64.7
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 9.9e-29 130.2 108 60.2
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 9.9e-29 130.2 108 60.2
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 9.9e-29 130.2 103 64.1
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 9.9e-29 130.2 99 64.6
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 4.2e-27 124.8 96 65.6
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 4.6e-26 121.3 108 59.3
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 1.4e-22 109.8 104 56.7
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 1.2e-21 106.7 82 64.6
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 5.8e-21 104.4 93 59.1
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 1.3e-20 103.2 86 61.6
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 1.7e-20 102.8 92 58.7
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 7.1e-19 97.4 86 61.6
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 4.6e-18 94.7 108 47.2
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 3.9e-17 91.7 64 64.1
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 3.9e-17 91.7 76 61.8
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 3.7e-15 85.1 86 57.0
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 5.3e-14 81.3 64 57.8
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 9.0e-14 80.5 51 70.6
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 2.2e-12 75.9 55 69.1
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 3.6e-10 68.6 55 65.5
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 3.6e-10 68.6 111 38.7
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 3.6e-10 68.6 89 42.7
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 4.6e-10 68.2 75 49.3
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 4.6e-10 68.2 49 67.3
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 3.9e-09 65.1 100 42.0
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 5.1e-09 64.7 55 60.0
Nn2g15167 Nelumbo nucifera HOM05D004421 ORTHO05D005227 1.1e-06 57.0 44 61.4


User provided reference genes

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