Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p45770 Brassica napus HOM05D006019 ORTHO05D007900 2.5e-107 392.1 196 100.0
BolC9t57451H Brassica oleracea HOM05D006019 ORTHO05D007900 2.2e-71 272.7 194 76.3
Thhalv10013195m.g Eutrema salsugineum HOM05D006019 ORTHO05D007900 8.4e-39 164.5 220 49.1
BcaB05g22192 Brassica carinata HOM05D006019 ORTHO05D007900 1.1e-38 164.1 220 48.2
C02p16310 Brassica napus HOM05D006019 ORTHO05D000403 1.9e-38 163.3 220 48.6
Sp6g17150 Schrenkiella parvula HOM05D006019 ORTHO05D007900 3.2e-38 162.5 220 47.7
BcaC03g14252 Brassica carinata HOM05D006019 ORTHO05D007900 4.2e-38 162.2 220 48.2
BolC2t07733H Brassica oleracea HOM05D006019 ORTHO05D007900 4.2e-38 162.2 220 48.2
A02p09780 Brassica napus HOM05D006019 ORTHO05D000403 9.3e-38 161.0 220 47.7
BraA02t06043Z Brassica rapa HOM05D006019 ORTHO05D007900 9.3e-38 161.0 220 47.7
AL8G30770 Arabidopsis lyrata HOM05D006019 ORTHO05D007900 6.0e-37 158.3 220 46.8
AT5G55220 Arabidopsis thaliana HOM05D006019 ORTHO05D007900 6.0e-37 158.3 220 46.8
Aa31LG3G11210 Aethionema arabicum HOM05D006019 ORTHO05D007900 2.3e-36 156.4 220 46.4
CARHR268580 Cardamine hirsuta HOM05D006019 ORTHO05D007900 3.0e-36 156.0 220 46.8
Carub.0008s1557 Capsella rubella HOM05D006019 ORTHO05D007900 3.9e-36 155.6 220 46.8
BcaC03g14251 Brassica carinata HOM05D006019 ORTHO05D007900 5.1e-36 155.2 216 47.7
TAR629G1914 Trochodendron aralioides HOM05D006019 ORTHO05D007900 1.4e-25 120.6 220 35.5
Cpa.g.sc284.5 Carica papaya HOM05D006019 ORTHO05D007900 2.4e-25 119.8 220 35.0
Peaxi162Scf00235g00727 Petunia axillaris HOM05D006019 ORTHO05D007900 4.0e-25 119.0 220 37.3
Nn1g07344 Nelumbo nucifera HOM05D006019 ORTHO05D007900 2.0e-24 116.7 230 33.5
Dinv22232 Davidia involucrata HOM05D006019 ORTHO05D007900 2.6e-24 116.3 229 33.6
TWI39G1205 Tripterygium wilfordii HOM05D006019 ORTHO05D007900 2.6e-24 116.3 221 34.4
CANSAT11G1049 Cannabis sativa HOM05D006019 ORTHO05D007900 4.5e-24 115.5 220 34.5
Manes.03G136600 Manihot esculenta HOM05D006019 ORTHO05D007900 1.7e-23 113.6 221 33.5
Eucgr.F03504 Eucalyptus grandis HOM05D006019 ORTHO05D007900 6.5e-23 111.7 220 33.6
THA.LOC104817684 Tarenaya hassleriana HOM05D006019 ORTHO05D007900 6.5e-23 111.7 221 35.7
CiPaw.11G172700 Carya illinoinensis HOM05D006019 ORTHO05D007900 8.4e-23 111.3 220 34.1
Lj1C880T10 Lonicera japonica HOM05D006019 ORTHO05D007900 8.4e-23 111.3 220 35.0
Solyc07g064950.3 Solanum lycopersicum HOM05D006019 ORTHO05D007900 8.4e-23 111.3 220 35.9
Sopen07g033150 Solanum pennellii HOM05D006019 ORTHO05D007900 8.4e-23 111.3 220 35.9
QL08p020269 Quercus lobata HOM05D006019 ORTHO05D007900 1.9e-22 110.2 220 32.3
PGSC0003DMG400022300 Solanum tuberosum HOM05D006019 ORTHO05D007900 1.9e-22 110.2 220 35.5
CSS0000535 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 2.5e-22 109.8 220 32.7
CSS0042888 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 2.5e-22 109.8 220 32.7
Ciclev10007944m.g Citrus clementina HOM05D006019 ORTHO05D007900 2.5e-22 109.8 220 36.4
Nitab4.5_0000984g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 3.2e-22 109.4 220 35.0
Migut.M01708 Erythranthe guttata HOM05D006019 ORTHO05D007900 4.2e-22 109.0 220 32.3
Nitab4.5_0002826g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 4.2e-22 109.0 220 35.0
CAN.G337.58 Capsicum annuum HOM05D006019 ORTHO05D007900 5.5e-22 108.6 220 34.5
Haze_09462 Corylus avellana HOM05D006019 ORTHO05D007900 5.5e-22 108.6 219 32.4
Actinidia35369 Actinidia chinensis HOM05D006019 ORTHO05D007900 7.1e-22 108.2 220 33.6
Hund01957 Selenicereus undatus HOM05D006019 ORTHO05D007900 9.3e-22 107.8 220 32.3
Duzib213G0195 Durio zibethinus HOM05D006019 ORTHO05D007900 1.2e-21 107.5 220 33.6
Potri.015G065900 Populus trichocarpa HOM05D006019 ORTHO05D007900 1.2e-21 107.5 229 32.3
vmacro09689 Vaccinium macrocarpon HOM05D006019 ORTHO05D007900 1.2e-21 107.5 220 33.2
Lalb_Chr04g0248161 Lupinus albus HOM05D006019 ORTHO05D007900 1.6e-21 107.1 230 32.6
Prupe.4G223000 Prunus persica HOM05D006019 ORTHO05D007900 1.6e-21 107.1 220 33.2
SGA_v2.0_scaffold171G38908 Striga asiatica HOM05D006019 ORTHO05D007900 1.6e-21 107.1 220 31.8
Atru.chr2.3529 Acer truncatum HOM05D006019 ORTHO05D007900 2.1e-21 106.7 220 32.7
Atru.chr2.3549 Acer truncatum HOM05D006019 ORTHO05D007900 2.1e-21 106.7 220 32.7
FvH4_3g23540 Fragaria vesca HOM05D006019 ORTHO05D007900 2.1e-21 106.7 220 33.6
FAN11G0939 Fragaria x ananassa HOM05D006019 ORTHO05D007900 2.1e-21 106.7 220 33.6
MD11G1209500 Malus domestica HOM05D006019 ORTHO05D007900 2.1e-21 106.7 220 32.7
VMungo0647G0128 Vigna mungo HOM05D006019 ORTHO05D007900 2.1e-21 106.7 221 33.5
DCAR_017106 Daucus carota HOM05D006019 ORTHO05D007900 2.7e-21 106.3 220 32.3
Sabra15G0091100 Salix brachista HOM05D006019 ORTHO05D007900 2.7e-21 106.3 229 31.9
GSVIVG01037722001 Vitis vinifera HOM05D006019 ORTHO05D007900 2.7e-21 106.3 220 32.7
PGR031G3909 Punica granatum HOM05D006019 ORTHO05D007900 3.5e-21 105.9 229 31.4
Cc05_g14300 Coffea canephora HOM05D006019 ORTHO05D007900 4.6e-21 105.5 220 32.3
FAN21G2609 Fragaria x ananassa HOM05D006019 ORTHO05D007900 4.6e-21 105.5 220 33.6
Lsat_1_v5_gn_9_90660 Lactuca sativa HOM05D006019 ORTHO05D007900 4.6e-21 105.5 220 30.9
LjContig00272g0018197 Lotus japonicus HOM05D006019 ORTHO05D007900 4.6e-21 105.5 229 32.3
Phvul.008G272400 Phaseolus vulgaris HOM05D006019 ORTHO05D007900 4.6e-21 105.5 221 32.6
Thecc.07G028300 Theobroma cacao HOM05D006019 ORTHO05D007900 4.6e-21 105.5 220 32.3
Medtr5g093830 Medicago truncatula HOM05D006019 ORTHO05D007900 6.0e-21 105.1 219 32.4
COL.COLO4_09733 Corchorus olitorius HOM05D006019 ORTHO05D007900 1.0e-20 104.4 220 33.2
FAN16G2690 Fragaria x ananassa HOM05D006019 ORTHO05D007900 1.0e-20 104.4 220 33.6
FAN25G1378 Fragaria x ananassa HOM05D006019 ORTHO05D007900 1.0e-20 104.4 220 33.2
Glyma.02G294900 Glycine max HOM05D006019 ORTHO05D007900 1.3e-20 104.0 221 33.0
Ca_06346_v3 Cicer arietinum L. HOM05D006019 ORTHO05D007900 2.3e-20 103.2 220 33.6
RcHm_v2.0_Chr5g0041541 Rosa chinensis HOM05D006019 ORTHO05D007900 2.3e-20 103.2 230 31.7
MBI19_g29437_MAGBIO Magnolia biondii HOM05D006019 ORTHO05D007900 3.0e-20 102.8 207 32.9
ClCG10G005120 Citrullus lanatus HOM05D006019 ORTHO05D007900 3.9e-20 102.4 220 32.3
arahy.Tifrunner.gnm1.ann1.G2L6CM Arachis hypogaea HOM05D006019 ORTHO05D007900 5.1e-20 102.1 229 32.8
ECA240G2757 Erigeron canadensis HOM05D006019 ORTHO05D007900 5.1e-20 102.1 220 30.0
Gohir.A01G084500 Gossypium hirsutum HOM05D006019 ORTHO05D007900 5.1e-20 102.1 220 33.2
Gorai.002G093600 Gossypium raimondii HOM05D006019 ORTHO05D007900 5.1e-20 102.1 220 32.7
SalBow8G4839 Salvia bowleyana HOM05D006019 ORTHO05D007900 1.1e-19 100.9 229 30.6
CsaV3_3G004800 Cucumis sativus L. HOM05D006019 ORTHO05D007900 1.5e-19 100.5 220 33.6
Gohir.D01G070900 Gossypium hirsutum HOM05D006019 ORTHO05D007900 1.5e-19 100.5 220 32.3
Sed0026759 Sechium edule HOM05D006019 ORTHO05D007900 1.9e-19 100.1 221 32.1
CDE04G0522 Ceratophyllum demersum HOM05D006019 ORTHO05D007900 7.4e-19 98.2 229 28.8
Glyma.14G018700 Glycine max HOM05D006019 ORTHO05D007900 7.4e-19 98.2 221 31.7
HanXRQChr13g0408251 Helianthus annuus HOM05D006019 ORTHO05D007900 7.4e-19 98.2 220 29.5
Oeu026379.1 Olea europaea HOM05D006019 ORTHO05D007900 9.7e-19 97.8 216 29.2
FAN25G3210 Fragaria x ananassa HOM05D006019 ORTHO05D007900 1.3e-18 97.4 226 32.7
AUR62015881 Chenopodium quinoa HOM05D006019 ORTHO05D007900 1.6e-18 97.1 220 30.0
MELO3C014178.2 Cucumis melo HOM05D006019 ORTHO05D007900 1.6e-18 97.1 220 32.7
Os06g0308000 Oryza sativa ssp. japonica HOM05D006019 ORTHO05D007900 2.2e-18 96.7 220 30.9
arahy.Tifrunner.gnm1.ann1.PR9FWM Arachis hypogaea HOM05D006019 ORTHO05D007900 2.8e-18 96.3 229 31.9
ATR1128G029 Amborella trichopoda HOM05D006019 ORTHO05D007900 4.8e-18 95.5 220 30.0
HanXRQChr03g0076861 Helianthus annuus HOM05D006019 ORTHO05D007900 6.3e-18 95.1 220 29.5
Ah.06g182250 Amaranthus hybridus HOM05D006019 ORTHO05D007900 1.4e-17 94.0 220 28.6
AUR62020342 Chenopodium quinoa HOM05D006019 ORTHO05D007900 1.4e-17 94.0 220 29.1
Zm00001eb405570 Zea mays HOM05D006019 ORTHO05D007900 1.4e-17 94.0 220 29.1
Aqoxy1G02863 Aquilegia oxysepala HOM05D006019 ORTHO05D007900 4.1e-17 92.4 230 29.6
TPR.G35353 Trifolium pratense HOM05D006019 ORTHO05D007900 5.3e-17 92.0 230 28.3
PSO541G6030 Papaver somniferum HOM05D006019 ORTHO05D007900 3.4e-16 89.4 221 29.0
A10p12490 Brassica napus HOM05D006019 ORTHO05D007900 4.5e-16 89.0 133 45.1
Psat2g009800 Pisum sativum HOM05D006019 ORTHO05D007900 7.7e-16 88.2 220 29.5
PSO675G6628 Papaver somniferum HOM05D006019 ORTHO05D007900 1.0e-15 87.8 221 28.5
EL10Ac4g07692 Beta vulgaris HOM05D006019 ORTHO05D007900 6.5e-15 85.1 250 28.4
Rhsim04G0016400 Rhododendron simsii HOM05D006019 ORTHO05D000403 2.1e-13 80.1 254 27.6
Oeu026380.1 Olea europaea HOM05D006019 ORTHO05D007900 3.0e-12 76.3 67 49.3
AagrBONN_evm.TU.Sc2ySwM_228.3732 Anthoceros agrestis HOM05D006019 ORTHO05D007900 1.1e-11 74.3 217 29.0
Pp3c11_10950 Physcomitrium patens HOM05D006019 ORTHO05D007900 2.5e-11 73.2 219 24.2
Glyma.14G020800 Glycine max HOM05D006019 ORTHO05D007900 5.7e-11 72.0 70 47.1
Mapoly0157s0020 Marchantia polymorpha HOM05D006019 ORTHO05D007900 4.8e-10 68.9 216 26.4
BraA10t43342Z Brassica rapa HOM05D006019 ORTHO05D007900 4.1e-09 65.9 114 39.5
Pp3c2_30270 Physcomitrium patens HOM05D006019 ORTHO05D007900 6.9e-09 65.1 218 24.3
SEGI_28230 Sequoiadendron giganteum HOM05D006019 ORTHO05D007900 9.1e-09 64.7 216 23.6
unitig_22.g6170 Utricularia gibba HOM05D006019 ORTHO05D007900 2.0e-08 63.5 182 26.9
CBR_g21850 Chara braunii HOM05D006019 ORTHO05D007900 2.6e-08 63.2 221 25.3
Sc16g0005740 Simmondsia chinensis HOM05D006019 ORTHO05D007900 4.5e-08 62.4 198 27.3
VMungo0464G1494 Vigna mungo HOM05D006019 ORTHO05D007900 4.2e-06 55.8 117 31.6


User provided reference genes

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