Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p45410 Brassica napus HOM05D006458 ORTHO05D008433 7.9e-82 307.0 148 100.0
BraA10t43315Z Brassica rapa HOM05D006458 ORTHO05D008433 2.4e-78 295.4 148 98.0
BcaC04g20291 Brassica carinata HOM05D006458 ORTHO05D008433 9.1e-78 293.5 148 97.3
A10p12190 Brassica napus HOM05D006458 ORTHO05D008433 2.6e-77 292.0 148 96.6
BcaB08g35852 Brassica carinata HOM05D006458 ORTHO05D008433 5.0e-76 287.7 148 94.6
Sp6g16820 Schrenkiella parvula HOM05D006458 ORTHO05D008433 3.0e-73 278.5 148 91.9
Thhalv10014954m.g Eutrema salsugineum HOM05D006458 ORTHO05D008433 3.8e-68 261.5 148 87.8
AL8G30300 Arabidopsis lyrata HOM05D006458 ORTHO05D008433 5.5e-67 257.7 148 85.1
Carub.0008s1515 Capsella rubella HOM05D006458 ORTHO05D008433 1.2e-66 256.5 148 84.5
CARHR268190 Cardamine hirsuta HOM05D006458 ORTHO05D008433 1.2e-66 256.5 148 85.1
Aa31LG3G10770 Aethionema arabicum HOM05D006458 ORTHO05D008433 1.8e-65 252.7 148 83.1
AT5G54855 Arabidopsis thaliana HOM05D006458 ORTHO05D008433 2.3e-65 252.3 148 83.8
THA.LOC104817659 Tarenaya hassleriana HOM05D006458 ORTHO05D008433 1.4e-62 243.0 148 80.4
Duzib170G0083 Durio zibethinus HOM05D006458 ORTHO05D008433 5.5e-59 231.1 147 74.8
Duzib170G1029 Durio zibethinus HOM05D006458 ORTHO05D008433 5.5e-59 231.1 147 74.8
Gorai.013G160500 Gossypium raimondii HOM05D006458 ORTHO05D008433 2.1e-58 229.2 147 75.5
Gohir.A13G138900 Gossypium hirsutum HOM05D006458 ORTHO05D008433 2.7e-58 228.8 147 75.5
Duzib170G0736 Durio zibethinus HOM05D006458 ORTHO05D008433 8.0e-58 227.3 147 73.5
Ciclev10009738m.g Citrus clementina HOM05D006458 ORTHO05D008433 1.0e-57 226.9 149 73.2
Gohir.D13G143700 Gossypium hirsutum HOM05D006458 ORTHO05D008433 5.2e-57 224.6 147 74.1
Gorai.002G087500 Gossypium raimondii HOM05D006458 ORTHO05D008433 8.8e-57 223.8 147 72.8
Thecc.07G043100 Theobroma cacao HOM05D006458 ORTHO05D008433 1.5e-56 223.0 147 73.5
Gohir.D01G065600 Gossypium hirsutum HOM05D006458 ORTHO05D008433 2.0e-56 222.6 147 72.8
COL.COLO4_09642 Corchorus olitorius HOM05D000451 ORTHO05D008433 3.3e-56 221.9 128 79.7
Gohir.A01G078500 Gossypium hirsutum HOM05D006458 ORTHO05D008433 7.5e-56 220.7 147 72.8
QL08p011516 Quercus lobata HOM05D006458 ORTHO05D008433 1.7e-55 219.5 141 74.5
Manes.03G125000 Manihot esculenta HOM05D006458 ORTHO05D008433 3.7e-55 218.4 145 69.7
Potri.011G137100 Populus trichocarpa HOM05D006458 ORTHO05D008433 4.8e-55 218.0 147 72.1
SalBow5G1944 Salvia bowleyana HOM05D006458 ORTHO05D008433 8.2e-55 217.2 144 75.0
TWI39G1057 Tripterygium wilfordii HOM05D006458 ORTHO05D008433 8.2e-55 217.2 148 68.9
Lsat_1_v5_gn_7_109420 Lactuca sativa HOM05D006458 ORTHO05D008433 1.1e-54 216.9 143 72.7
Hma1.2p1_0673F.1_g201190 Hydrangea macrophylla HOM05D006458 ORTHO05D008433 3.1e-54 215.3 147 70.1
Sabra16G0288000 Salix brachista HOM05D006458 ORTHO05D008433 5.3e-54 214.5 147 69.4
CANSAT11G2101 Cannabis sativa HOM05D006458 ORTHO05D008433 9.1e-54 213.8 150 69.3
Cpa.g.sc97.30 Carica papaya HOM05D006458 ORTHO05D008433 1.2e-53 213.4 147 70.1
Migut.M01780 Erythranthe guttata HOM05D006458 ORTHO05D008433 1.2e-53 213.4 143 71.3
Lj6g0005932 Lotus japonicus HOM05D006458 ORTHO05D008433 1.2e-53 213.4 147 69.4
Dinv22275 Davidia involucrata HOM05D006458 ORTHO05D008433 1.6e-53 213.0 147 70.7
SGA_v2.0_scaffold7G03986 Striga asiatica HOM05D006458 ORTHO05D008433 1.6e-53 213.0 123 77.2
HanXRQChr11g0336301 Helianthus annuus HOM05D006458 ORTHO05D008433 2.0e-53 212.6 136 74.3
Cfa020375 Carpinus fangiana HOM05D006458 ORTHO05D008433 3.5e-53 211.8 140 72.9
AUR62015736 Chenopodium quinoa HOM05D006458 ORTHO05D008433 3.5e-53 211.8 122 79.5
AUR62020475 Chenopodium quinoa HOM05D006458 ORTHO05D008433 3.5e-53 211.8 122 79.5
CSS0025826 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 4.5e-53 211.5 125 77.6
FAN21G0544 Fragaria x ananassa HOM05D006458 ORTHO05D008433 4.5e-53 211.5 146 67.1
Ah.04g165770 Amaranthus hybridus HOM05D006458 ORTHO05D008433 7.7e-53 210.7 135 72.6
CAN.G416.46 Capsicum annuum HOM05D006458 ORTHO05D008433 7.7e-53 210.7 136 72.8
Glyma.08G314400 Glycine max HOM05D006458 ORTHO05D008433 1.0e-52 210.3 141 69.5
GSVIVG01037612001 Vitis vinifera HOM05D006458 ORTHO05D008433 1.3e-52 209.9 123 77.2
CiPaw.12G128400 Carya illinoinensis HOM05D006458 ORTHO05D008433 1.7e-52 209.5 147 69.4
Hma1.2p1_1271F.1_g271730 Hydrangea macrophylla HOM05D006458 ORTHO05D008433 1.7e-52 209.5 138 71.0
PGR031G1917 Punica granatum HOM05D006458 ORTHO05D008433 1.7e-52 209.5 142 72.5
EL10Ac4g07850 Beta vulgaris HOM05D006458 ORTHO05D008433 2.2e-52 209.1 122 80.3
Dinv40738 Davidia involucrata HOM05D000653 ORTHO05D008581 2.2e-52 209.1 139 73.4
Lj1A870G91 Lonicera japonica HOM05D006458 ORTHO05D008433 2.9e-52 208.8 147 68.7
Psat5g192520 Pisum sativum HOM05D006458 ORTHO05D008433 2.9e-52 208.8 148 67.6
RcHm_v2.0_Chr5g0038891 Rosa chinensis HOM05D006458 ORTHO05D008433 2.9e-52 208.8 141 68.8
Haze_09655 Corylus avellana HOM05D000653 ORTHO05D008581 3.8e-52 208.4 133 75.9
FAN11G3779 Fragaria x ananassa HOM05D006458 ORTHO05D008433 3.8e-52 208.4 146 65.1
Medtr3g051110 Medicago truncatula HOM05D006458 ORTHO05D008433 3.8e-52 208.4 147 67.3
FvH4_3g22360 Fragaria vesca HOM05D006458 ORTHO05D008433 5.0e-52 208.0 146 65.1
Prupe.4G210000 Prunus persica HOM05D006458 ORTHO05D008433 5.0e-52 208.0 140 67.9
Sed0021211 Sechium edule HOM05D006458 ORTHO05D008433 5.0e-52 208.0 141 68.1
Sc03g0008720 Simmondsia chinensis HOM05D006458 ORTHO05D008433 5.0e-52 208.0 125 77.6
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 6.5e-52 207.6 119 77.3
DCAR_010044 Daucus carota HOM05D006458 ORTHO05D008433 6.5e-52 207.6 123 77.2
MSTRG.15157 Avicennia marina HOM05D006458 ORTHO05D008433 8.5e-52 207.2 123 76.4
MD03G1206100 Malus domestica HOM05D006458 ORTHO05D008433 8.5e-52 207.2 148 66.9
Aqoxy2G01543 Aquilegia oxysepala HOM05D006458 ORTHO05D008433 1.1e-51 206.8 145 69.7
arahy.Tifrunner.gnm1.ann1.JDXG8H Arachis hypogaea HOM05D006458 ORTHO05D008433 1.1e-51 206.8 141 68.8
MD11G1221600 Malus domestica HOM05D006458 ORTHO05D008433 1.1e-51 206.8 140 67.9
PGSC0003DMG400001097 Solanum tuberosum HOM05D006458 ORTHO05D008433 1.1e-51 206.8 147 66.7
Glyma.18G099800 Glycine max HOM05D006458 ORTHO05D008433 1.5e-51 206.5 141 67.4
CSS0046732 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 1.9e-51 206.1 123 75.6
Ca_14717_v3 Cicer arietinum L. HOM05D006458 ORTHO05D008433 1.9e-51 206.1 147 66.7
Peaxi162Scf00450g00732 Petunia axillaris HOM05D006458 ORTHO05D008433 1.9e-51 206.1 147 65.3
arahy.Tifrunner.gnm1.ann1.717SVK Arachis hypogaea HOM05D006458 ORTHO05D008433 2.5e-51 205.7 141 69.5
VMungo0540G0475 Vigna mungo HOM05D006458 ORTHO05D008433 2.5e-51 205.7 141 68.1
Phvul.005G120100 Phaseolus vulgaris HOM05D006458 ORTHO05D008433 3.2e-51 205.3 141 68.1
ATR0752G141 Amborella trichopoda HOM05D006458 ORTHO05D008433 4.2e-51 204.9 136 69.9
Hund02079 Selenicereus undatus HOM05D006458 ORTHO05D008433 4.2e-51 204.9 141 68.8
Solyc12g005150.2 Solanum lycopersicum HOM05D006458 ORTHO05D008433 4.2e-51 204.9 123 74.8
ClCG10G005510 Citrullus lanatus HOM05D006458 ORTHO05D008433 7.2e-51 204.1 147 65.3
Cc05_g13560 Coffea canephora HOM05D006458 ORTHO05D008433 9.4e-51 203.8 146 66.4
Nitab4.5_0000749g0130 Nicotiana tabacum HOM05D006458 ORTHO05D008433 9.4e-51 203.8 147 66.0
Sopen12g001140 Solanum pennellii HOM05D006458 ORTHO05D008433 1.2e-50 203.4 147 65.3
Phvul.006G040400 Phaseolus vulgaris HOM05D006458 ORTHO05D008433 1.6e-50 203.0 141 67.4
CsaV3_3G005240 Cucumis sativus L. HOM05D006458 ORTHO05D008433 2.7e-50 202.2 147 63.3
Lalb_Chr15g0081001 Lupinus albus HOM05D006458 ORTHO05D008433 2.7e-50 202.2 141 67.4
TAR629G1817 Trochodendron aralioides HOM05D006458 ORTHO05D008433 2.7e-50 202.2 141 67.4
Nitab4.5_0000653g0030 Nicotiana tabacum HOM05D006458 ORTHO05D008433 8.0e-50 200.7 147 64.6
Nitab4.5_0004336g0030 Nicotiana tabacum HOM05D006458 ORTHO05D008433 8.0e-50 200.7 123 74.8
Nitab4.5_0001604g0080 Nicotiana tabacum HOM05D006458 ORTHO05D008433 1.4e-49 199.9 123 74.0
TAR626G0847 Trochodendron aralioides HOM05D006458 ORTHO05D008433 2.3e-49 199.1 141 68.1
SalBow7G4274 Salvia bowleyana HOM05D006458 ORTHO05D008433 3.0e-49 198.7 171 61.4
vmacro09731 Vaccinium macrocarpon HOM05D006458 ORTHO05D008433 1.2e-48 196.8 184 54.9
Zm00001eb178010 Zea mays HOM05D006458 ORTHO05D008433 1.2e-48 196.8 140 65.7
CDE05G1373 Ceratophyllum demersum HOM05D006458 ORTHO05D008433 2.0e-48 196.1 121 69.4
Os02g0317800 Oryza sativa ssp. japonica HOM05D006458 ORTHO05D008433 2.6e-48 195.7 136 65.4
MBI18_g24806_MAGBIO Magnolia biondii HOM05D006458 ORTHO05D008433 6.3e-47 191.0 146 64.4
CDE02G3449 Ceratophyllum demersum HOM05D006458 ORTHO05D008433 8.3e-47 190.7 121 69.4
PSO541G1528 Papaver somniferum HOM05D006458 ORTHO05D008433 8.3e-47 190.7 123 69.9
PSO675G3423 Papaver somniferum HOM05D006458 ORTHO05D008433 3.1e-46 188.7 123 69.9
unitig_8.g4602 Utricularia gibba HOM05D006458 ORTHO05D008433 2.0e-45 186.0 135 66.7
RhsimUnG0251700 Rhododendron simsii HOM05D006458 ORTHO05D008433 1.7e-44 183.0 208 48.1
CSS0035522 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 6.5e-44 181.0 105 81.0
Sabra11G0123000 Salix brachista HOM05D006458 ORTHO05D008433 1.1e-43 180.3 180 55.0
HPP92_005293 Vanilla planifolia HOM05D006458 ORTHO05D008433 1.5e-43 179.9 122 66.4
Nn1g03576 Nelumbo nucifera HOM05D006458 ORTHO05D008433 3.6e-42 175.3 122 68.0
ECA236G2465 Erigeron canadensis HOM05D000653 ORTHO05D008581 2.2e-39 166.0 108 74.1
SalBow7G3069 Salvia bowleyana HOM05D006458 ORTHO05D008433 5.0e-36 154.8 94 75.5
Eucgr.F03456 Eucalyptus grandis HOM05D006458 ORTHO05D008433 8.6e-36 154.1 94 76.6
Oeu062597.2 Olea europaea HOM05D006458 ORTHO05D008433 5.6e-35 151.4 92 73.9
MELO3C031911.2 Cucumis melo HOM05D006458 ORTHO05D008433 7.3e-35 151.0 99 69.7
Atru.chr2.3327 Acer truncatum HOM05D006458 ORTHO05D008433 1.2e-32 143.7 94 69.1
SEGI_29279 Sequoiadendron giganteum HOM05D006458 ORTHO05D008433 1.7e-31 139.8 113 61.1
Nitab4.5_0000296g0120 Nicotiana tabacum HOM05D006458 ORTHO05D008433 7.8e-29 131.0 95 61.1
AUR62029374 Chenopodium quinoa HOM05D001363 ORTHO05D006255 3.3e-19 99.0 109 51.4
Atru.chr2.3388 Acer truncatum HOM05D006458 ORTHO05D008433 6.2e-18 94.7 66 74.2
MD01G1183100 Malus domestica HOM05D005560 ORTHO05D006862 2.1e-10 69.7 42 64.3
FAN25G2931 Fragaria x ananassa HOM05D006458 ORTHO05D008433 8.1e-10 67.8 35 91.4
RcHm_v2.0_Chr5g0038871 Rosa chinensis HOM05D006458 ORTHO05D008433 1.3e-07 60.5 48 58.3
TPR.G13209 Trifolium pratense HOM05D006458 ORTHO05D008433 1.7e-07 60.1 54 55.6
A06p35450 Brassica napus HOM05D006458 ORTHO05D041657 2.2e-07 59.7 30 86.7
BraA06t26468Z Brassica rapa HOM05D006458 ORTHO05D041657 2.2e-07 59.7 30 86.7
Nitab4.5_0000286g0120 Nicotiana tabacum HOM05D006458 ORTHO05D008433 4.2e-06 55.5 63 47.6


User provided reference genes

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