Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p45130 Brassica napus HOM05D015522 ORTHO05D031943 6.2e-106 387.5 199 100.0
BolC5t31758H Brassica oleracea HOM05D015522 ORTHO05D031943 1.1e-91 340.1 194 91.8
BcaC04g20309 Brassica carinata HOM05D015522 ORTHO05D031943 1.3e-63 246.9 148 90.5
C05p30200 Brassica napus HOM05D015522 ORTHO05D027244 5.5e-62 241.5 195 71.8
C05p30190 Brassica napus HOM05D015522 ORTHO05D027244 1.2e-45 187.2 114 89.5
C04p20660 Brassica napus HOM05D015522 ORTHO05D040441 3.0e-36 156.0 78 96.2
BolC4t23593H Brassica oleracea HOM05D015522 ORTHO05D040441 6.8e-36 154.8 78 94.9
BolC9t57385H Brassica oleracea HOM05D015522 ORTHO05D107211 3.4e-19 99.4 48 97.9
A02p25620 Brassica napus HOM05D015522 ORTHO05D101080 9.8e-19 97.8 50 94.0
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 5.9e-16 88.6 93 63.4
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 7.8e-16 88.2 117 52.1
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 7.8e-16 88.2 117 52.1
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 7.8e-16 88.2 117 52.1
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 2.3e-15 86.7 117 51.3
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 2.3e-15 86.7 117 51.3
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 2.5e-14 83.2 117 50.4
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 9.5e-14 81.3 117 49.6
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 5.2e-12 75.5 148 41.2
BcaB05g24178 Brassica carinata HOM05D004010 ORTHO05D027244 6.8e-12 75.1 87 59.8
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 8.9e-12 74.7 117 46.2
CARHR149120 Cardamine hirsuta HOM05D004010 ORTHO05D004995 1.2e-11 74.3 117 46.2
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 4.4e-11 72.4 117 45.3
BcaB07g33347 Brassica carinata HOM05D004010 ORTHO05D004995 1.3e-10 70.9 101 52.5
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 4.9e-10 68.9 111 43.2
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 4.9e-10 68.9 116 44.0


User provided reference genes

Program Settings