Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p45040 Brassica napus HOM05D006170 ORTHO05D007794 2.0e-109 399.1 193 100.0
BcaC04g20316 Brassica carinata HOM05D006170 ORTHO05D007794 9.3e-107 390.2 193 97.9
BolC9t57379H Brassica oleracea HOM05D006170 ORTHO05D007794 9.3e-107 390.2 193 97.9
BraA10t43291Z Brassica rapa HOM05D006170 ORTHO05D007794 6.2e-103 377.5 193 95.3
BcaB08g35828 Brassica carinata HOM05D006170 ORTHO05D007794 3.5e-98 361.7 193 92.2
A10p11950 Brassica napus HOM05D006170 ORTHO05D007794 3.3e-96 355.1 240 76.7
Thhalv10014749m.g Eutrema salsugineum HOM05D006170 ORTHO05D007794 9.6e-96 353.6 193 87.0
AT5G54660 Arabidopsis thaliana HOM05D006170 ORTHO05D007794 1.4e-94 349.7 193 85.5
Carub.0008s1492 Capsella rubella HOM05D006170 ORTHO05D007794 4.0e-94 348.2 191 85.9
AL8G30110 Arabidopsis lyrata HOM05D006170 ORTHO05D007794 6.9e-94 347.4 194 86.6
Sp6g16620 Schrenkiella parvula HOM05D006170 ORTHO05D007794 1.0e-92 343.6 193 85.0
A02p10120 Brassica napus HOM05D006170 ORTHO05D007794 4.6e-90 334.7 193 85.5
BraA02t06083Z Brassica rapa HOM05D006170 ORTHO05D007794 4.6e-90 334.7 193 85.5
BcaB05g22153 Brassica carinata HOM05D006170 ORTHO05D007794 4.3e-88 328.2 193 83.9
C02p16810 Brassica napus HOM05D006170 ORTHO05D007794 1.6e-87 326.2 193 84.5
BolC2t07784H Brassica oleracea HOM05D006170 ORTHO05D007794 1.6e-87 326.2 193 84.5
BcaC03g14298 Brassica carinata HOM05D006170 ORTHO05D007794 3.7e-87 325.1 185 85.9
Aa31LG3G10590 Aethionema arabicum HOM05D006170 ORTHO05D007794 3.0e-81 305.4 196 76.0
THA.LOC104799886 Tarenaya hassleriana HOM05D006170 ORTHO05D007794 1.5e-61 240.0 195 63.1
Cpa.g.sc97.82 Carica papaya HOM05D006170 ORTHO05D007794 1.9e-59 233.0 182 62.6
Ciclev10009527m.g Citrus clementina HOM05D006170 ORTHO05D007794 3.9e-57 225.3 178 62.4
Potri.001G416200 Populus trichocarpa HOM05D006170 ORTHO05D007794 2.0e-56 223.0 180 58.9
Potri.011G131800 Populus trichocarpa HOM05D006170 ORTHO05D007794 7.4e-56 221.1 178 59.6
Thecc.07G055300 Theobroma cacao HOM05D006170 ORTHO05D007794 3.7e-55 218.8 181 60.2
Cfa020437 Carpinus fangiana HOM05D006170 ORTHO05D007794 4.8e-55 218.4 181 59.7
Manes.03G122000 Manihot esculenta HOM05D006170 ORTHO05D007794 4.8e-55 218.4 178 59.0
Haze_09591 Corylus avellana HOM05D006170 ORTHO05D007794 6.3e-55 218.0 177 61.0
Sabra11G0118800 Salix brachista HOM05D006170 ORTHO05D007794 8.2e-55 217.6 177 57.1
Glyma.12G215300 Glycine max HOM05D006170 ORTHO05D007794 5.3e-54 214.9 182 57.1
FvH4_3g21680 Fragaria vesca HOM05D006170 ORTHO05D007794 7.0e-54 214.5 187 58.8
Glyma.13G286300 Glycine max HOM05D006170 ORTHO05D007794 9.1e-54 214.2 182 57.7
TWI39G0874 Tripterygium wilfordii HOM05D006170 ORTHO05D007794 1.6e-53 213.4 186 57.5
Atru.chr2.3180 Acer truncatum HOM05D006170 ORTHO05D007794 2.0e-53 213.0 186 58.6
FAN25G0963 Fragaria x ananassa HOM05D006170 ORTHO05D007794 2.0e-53 213.0 179 59.8
COL.COLO4_09554 Corchorus olitorius HOM05D006170 ORTHO05D007794 4.5e-53 211.8 182 57.1
Sabra16G0282800 Salix brachista HOM05D006170 ORTHO05D007794 4.5e-53 211.8 181 56.9
FAN16G2181 Fragaria x ananassa HOM05D006170 ORTHO05D007794 7.7e-53 211.1 187 58.8
QL08p013814 Quercus lobata HOM05D006170 ORTHO05D007794 1.0e-52 210.7 177 59.3
Lj3g0005940 Lotus japonicus HOM05D006170 ORTHO05D007794 1.7e-52 209.9 182 54.9
CSS0048908 Camellia sinensis var. sinensis HOM05D006170 ORTHO05D007794 2.9e-52 209.1 177 57.1
Lalb_Chr22g0357121 Lupinus albus HOM05D006170 ORTHO05D007794 2.9e-52 209.1 183 54.6
GSVIVG01014582001 Vitis vinifera HOM05D006170 ORTHO05D007794 3.8e-52 208.8 185 59.5
CiPaw.11G182800 Carya illinoinensis HOM05D006170 ORTHO05D007794 5.0e-52 208.4 176 59.1
CiPaw.12G125700 Carya illinoinensis HOM05D006170 ORTHO05D007794 5.0e-52 208.4 176 58.5
Phvul.005G090600 Phaseolus vulgaris HOM05D006170 ORTHO05D007794 5.0e-52 208.4 182 56.0
VMungo1080G0982 Vigna mungo HOM05D006170 ORTHO05D007794 5.0e-52 208.4 182 55.5
arahy.Tifrunner.gnm1.ann1.I4GK8M Arachis hypogaea HOM05D006170 ORTHO05D007794 6.5e-52 208.0 187 55.1
Manes.15G077500 Manihot esculenta HOM05D006170 ORTHO05D007794 8.5e-52 207.6 177 57.6
FAN21G2913 Fragaria x ananassa HOM05D006170 ORTHO05D007794 2.5e-51 206.1 187 57.2
CSS0004985 Camellia sinensis var. sinensis HOM05D006170 ORTHO05D007794 3.2e-51 205.7 177 57.1
Eucgr.F00998 Eucalyptus grandis HOM05D006170 ORTHO05D007794 4.2e-51 205.3 178 55.6
Lj8A165T103 Lonicera japonica HOM05D006170 ORTHO05D007794 4.2e-51 205.3 177 57.6
PSO832G2973 Papaver somniferum HOM05D006170 ORTHO05D007794 4.2e-51 205.3 177 56.5
PGR083G1948 Punica granatum HOM05D006170 ORTHO05D007794 4.2e-51 205.3 177 57.1
RcHm_v2.0_Chr5g0037161 Rosa chinensis HOM05D006170 ORTHO05D007794 4.2e-51 205.3 184 56.5
Duzib213G0548 Durio zibethinus HOM05D006170 ORTHO05D007794 7.2e-51 204.5 181 56.4
TPR.G36813 Trifolium pratense HOM05D006170 ORTHO05D007794 9.4e-51 204.1 182 54.4
arahy.Tifrunner.gnm1.ann1.IBV8H8 Arachis hypogaea HOM05D006170 ORTHO05D007794 1.2e-50 203.8 189 54.0
Psat5g249640 Pisum sativum HOM05D006170 ORTHO05D007794 1.2e-50 203.8 185 53.5
Gohir.A13G141800 Gossypium hirsutum HOM05D006170 ORTHO05D007794 2.1e-50 203.0 179 57.0
MD03G1213300 Malus domestica HOM05D006170 ORTHO05D007794 2.1e-50 203.0 196 54.6
Ca_01769_v3 Cicer arietinum L. HOM05D006170 ORTHO05D007794 2.7e-50 202.6 184 55.4
Medtr2g082180 Medicago truncatula HOM05D006170 ORTHO05D007794 2.7e-50 202.6 183 53.6
Gorai.013G164300 Gossypium raimondii HOM05D006170 ORTHO05D007794 4.7e-50 201.8 179 57.0
PSO210G3318 Papaver somniferum HOM05D006170 ORTHO05D007794 4.7e-50 201.8 177 55.9
Dinv22315 Davidia involucrata HOM05D006170 ORTHO05D007794 1.8e-49 199.9 176 57.4
Lalb_Chr14g0366041 Lupinus albus HOM05D006170 ORTHO05D007794 1.8e-49 199.9 184 52.7
CARHR267970 Cardamine hirsuta HOM05D006170 ORTHO05D007794 2.3e-49 199.5 107 87.9
MD11G1228200 Malus domestica HOM05D006170 ORTHO05D007794 2.3e-49 199.5 192 53.6
Gohir.D13G146500 Gossypium hirsutum HOM05D006170 ORTHO05D007794 4.0e-49 198.7 179 57.0
CANSAT11G1152 Cannabis sativa HOM05D006170 ORTHO05D007794 5.2e-49 198.4 197 51.8
Duzib268G1633 Durio zibethinus HOM05D006170 ORTHO05D007794 5.2e-49 198.4 181 55.2
Gorai.002G081600 Gossypium raimondii HOM05D006170 ORTHO05D007794 5.2e-49 198.4 183 55.7
RhsimUnG0253700 Rhododendron simsii HOM05D006170 ORTHO05D007794 6.8e-49 198.0 179 55.9
vmacro09751 Vaccinium macrocarpon HOM05D006170 ORTHO05D007794 1.5e-48 196.8 181 54.7
Actinidia09955 Actinidia chinensis HOM05D006170 ORTHO05D007794 2.6e-48 196.1 177 53.7
MBI18_g24149_MAGBIO Magnolia biondii HOM05D006170 ORTHO05D007794 4.4e-48 195.3 188 53.2
Peaxi162Scf01086g00027 Petunia axillaris HOM05D006170 ORTHO05D007794 5.7e-48 194.9 181 51.4
Gohir.A01G073600 Gossypium hirsutum HOM05D006170 ORTHO05D007794 9.7e-48 194.1 183 54.1
Gohir.D01G060200 Gossypium hirsutum HOM05D006170 ORTHO05D007794 9.7e-48 194.1 183 54.6
CsaV3_3G005420 Cucumis sativus L. HOM05D006170 ORTHO05D007794 1.7e-47 193.4 182 53.3
Hund23320 Selenicereus undatus HOM05D006170 ORTHO05D007794 1.7e-47 193.4 180 51.7
VMungo1127G1132 Vigna mungo HOM05D006170 ORTHO05D007794 2.2e-47 193.0 183 51.9
TAR627G0053 Trochodendron aralioides HOM05D006170 ORTHO05D007794 4.8e-47 191.8 185 54.6
Sc03g0009170 Simmondsia chinensis HOM05D006170 ORTHO05D007794 6.3e-47 191.4 176 52.8
TAR627G0202 Trochodendron aralioides HOM05D006170 ORTHO05D007794 6.3e-47 191.4 185 54.6
AUR62029239 Chenopodium quinoa HOM05D006170 ORTHO05D007794 8.3e-47 191.0 163 54.0
MELO3C025424.2 Cucumis melo HOM05D006170 ORTHO05D007794 1.1e-46 190.7 180 52.2
Sed0018130 Sechium edule HOM05D006170 ORTHO05D007794 2.4e-46 189.5 179 52.0
AUR62015633 Chenopodium quinoa HOM05D006170 ORTHO05D007794 9.1e-46 187.6 159 54.7
Cc05_g13150 Coffea canephora HOM05D006170 ORTHO05D007794 1.6e-45 186.8 178 52.2
Atru.chr2.3190 Acer truncatum HOM05D006170 ORTHO05D007794 3.5e-45 185.7 141 65.2
EL10Ac4g07990 Beta vulgaris HOM05D006170 ORTHO05D007794 3.5e-45 185.7 181 52.5
Aqoxy1G03815 Aquilegia oxysepala HOM05D006170 ORTHO05D007794 7.7e-45 184.5 176 52.3
ClCG10G005700 Citrullus lanatus HOM05D006170 ORTHO05D007794 1.0e-44 184.1 179 52.5
HanXRQChr11g0332711 Helianthus annuus HOM05D006170 ORTHO05D007794 2.2e-44 183.0 180 50.6
CAN.G337.156 Capsicum annuum HOM05D006170 ORTHO05D007794 8.5e-44 181.0 180 50.6
Solyc07g064020.4 Solanum lycopersicum HOM05D006170 ORTHO05D007794 8.5e-44 181.0 185 49.2
PGSC0003DMG400019265 Solanum tuberosum HOM05D006170 ORTHO05D007794 1.9e-43 179.9 180 49.4
Lsat_1_v5_gn_7_108120 Lactuca sativa HOM05D006170 ORTHO05D007794 1.2e-42 177.2 179 50.3
Nn1g06950 Nelumbo nucifera HOM05D006170 ORTHO05D007794 2.1e-42 176.4 181 50.3
ECA236G0468 Erigeron canadensis HOM05D006170 ORTHO05D007794 4.0e-41 172.2 179 50.8
unitig_37.g12585 Utricularia gibba HOM05D006170 ORTHO05D007794 1.5e-40 170.2 182 48.9
HPP92_000867 Vanilla planifolia HOM05D006170 ORTHO05D007794 2.6e-40 169.5 179 49.2
Oeu007615.3 Olea europaea HOM05D006170 ORTHO05D007794 5.7e-40 168.3 185 50.8
CDE05G2462 Ceratophyllum demersum HOM05D006170 ORTHO05D007794 1.7e-39 166.8 176 48.9
Os05g0500500 Oryza sativa ssp. japonica HOM05D006170 ORTHO05D007794 1.8e-38 163.3 179 46.9
SalBow7G2464 Salvia bowleyana HOM05D006170 ORTHO05D007794 7.0e-38 161.4 180 50.0
Nitab4.5_0000397g0160 Nicotiana tabacum HOM05D006170 ORTHO05D007794 2.3e-36 156.4 177 45.8
Sopen07g032160 Solanum pennellii HOM05D006170 ORTHO05D007794 1.1e-35 154.1 141 53.9
Zm00001eb291920 Zea mays HOM05D006170 ORTHO05D007794 1.9e-35 153.3 170 50.6
Zm00001eb352720 Zea mays HOM05D006170 ORTHO05D007794 2.5e-35 152.9 172 48.8
CDE05G1194 Ceratophyllum demersum HOM05D006170 ORTHO05D007794 3.3e-35 152.5 176 46.6
Migut.M01817 Erythranthe guttata HOM05D006170 ORTHO05D007794 9.5e-35 151.0 186 46.2
SGA_v2.0_scaffold34G13954 Striga asiatica HOM05D000141 ORTHO05D001968 5.2e-33 145.2 190 42.6
Ah.04g165500 Amaranthus hybridus HOM05D006170 ORTHO05D007794 6.3e-31 138.3 180 43.3
Atru.chr2.3179 Acer truncatum HOM05D006170 ORTHO05D007794 2.3e-28 129.8 109 56.9
Atru.chr2.3188 Acer truncatum HOM05D006170 ORTHO05D007794 2.3e-28 129.8 109 56.9
Atru.chr2.3172 Acer truncatum HOM05D006170 ORTHO05D007794 1.1e-27 127.5 106 56.6
TAR629G2130 Trochodendron aralioides HOM05D000141 ORTHO05D001968 3.3e-27 125.9 102 55.9
Prupe.4G201100 Prunus persica HOM05D006170 ORTHO05D007794 1.0e-25 120.9 114 58.8
Atru.chr2.3169 Acer truncatum HOM05D006170 ORTHO05D007794 1.4e-25 120.6 99 55.6
ATR1088G045 Amborella trichopoda HOM05D006170 ORTHO05D007794 1.7e-23 113.6 162 43.2
SEGI_04384 Sequoiadendron giganteum HOM05D006170 ORTHO05D000001 3.7e-23 112.5 160 38.1
vmacro22724 Vaccinium macrocarpon HOM05D006170 ORTHO05D007794 4.9e-23 112.1 109 55.0
Oeu013861.1 Olea europaea HOM05D000359 ORTHO05D000251 6.4e-23 111.7 105 52.4
SEGI_21038 Sequoiadendron giganteum HOM05D000136 ORTHO05D007794 3.6e-18 95.9 166 31.9
Medtr0769s0020 Medicago truncatula HOM05D006170 ORTHO05D007794 3.4e-16 89.4 79 57.0
Nitab4.5_0002238g0030 Nicotiana tabacum HOM05D006170 ORTHO05D007794 7.8e-13 78.2 79 50.6
Glyma.02G076600 Glycine max HOM05D000136 ORTHO05D000080 5.2e-09 65.5 133 32.3
Rhsim03G0138500 Rhododendron simsii HOM05D000136 ORTHO05D000080 9.9e-08 61.2 143 28.0
DCAR_027777 Daucus carota HOM05D000136 ORTHO05D000080 1.7e-07 60.5 137 29.9
CAN.G853.6 Capsicum annuum HOM05D000136 ORTHO05D000080 2.2e-07 60.1 132 26.5
EL10Ac2g04658 Beta vulgaris HOM05D000136 ORTHO05D000080 3.7e-07 59.3 143 28.7
Actinidia15624 Actinidia chinensis HOM05D000136 ORTHO05D000080 4.9e-07 58.9 150 29.3
Nitab4.5_0000104g0260 Nicotiana tabacum HOM05D006170 ORTHO05D007794 4.9e-07 58.9 41 58.5
Glyma.14G063800 Glycine max HOM05D000136 ORTHO05D000080 6.4e-07 58.5 141 27.7
Pp3c25_8880 Physcomitrium patens HOM05D000136 ORTHO05D000080 8.4e-07 58.2 137 28.5
Aqoxy5G00809 Aquilegia oxysepala HOM05D000136 ORTHO05D000080 1.1e-06 57.8 132 25.8
Prupe.8G046200 Prunus persica HOM05D000136 ORTHO05D000080 1.1e-06 57.8 147 26.5
ATR0210G042 Amborella trichopoda HOM05D000136 ORTHO05D000080 2.4e-06 56.6 121 28.1
Manes.14G149400 Manihot esculenta HOM05D000136 ORTHO05D000080 2.4e-06 56.6 142 27.5
Glyma.13G176000 Glycine max HOM05D000136 ORTHO05D000080 4.1e-06 55.8 136 27.2
AUR62012170 Chenopodium quinoa HOM05D000136 ORTHO05D000080 5.4e-06 55.5 141 28.4
AL2G16910 Arabidopsis lyrata HOM05D000136 ORTHO05D000080 7.1e-06 55.1 152 25.0
Lalb_Chr12g0205411 Lupinus albus HOM05D000136 ORTHO05D000080 7.1e-06 55.1 138 28.3
Actinidia23908 Actinidia chinensis HOM05D000136 ORTHO05D000080 9.2e-06 54.7 118 27.1
Duzib170G0226 Durio zibethinus HOM05D000136 ORTHO05D000080 9.2e-06 54.7 123 26.8
Duzib170G0307 Durio zibethinus HOM05D000136 ORTHO05D000080 9.2e-06 54.7 123 27.6
Lalb_Chr16g0383931 Lupinus albus HOM05D000136 ORTHO05D000080 9.2e-06 54.7 136 27.9
Lalb_Chr16g0383961 Lupinus albus HOM05D000136 ORTHO05D000080 9.2e-06 54.7 136 27.9
Peaxi162Scf00420g00141 Petunia axillaris HOM05D000136 ORTHO05D000080 9.2e-06 54.7 122 25.4


User provided reference genes

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