Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 1.2e-68 263.5 183 100.0
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 2.0e-34 149.8 107 77.6
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 1.3e-33 147.1 174 70.7
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 5.6e-29 131.7 123 61.0
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 3.7e-28 129.0 85 75.3
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 3.7e-28 129.0 85 75.3
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 3.7e-28 129.0 85 75.3
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 3.7e-28 129.0 85 75.3
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 3.7e-28 129.0 85 75.3
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 6.2e-28 128.3 85 75.3
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 6.2e-28 128.3 85 75.3
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 6.2e-28 128.3 85 75.3
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 6.2e-28 128.3 85 75.3
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 6.2e-28 128.3 85 75.3
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 1.4e-27 127.1 85 72.9
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 1.4e-27 127.1 76 84.2
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 1.8e-27 126.7 85 71.8
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 1.8e-27 126.7 85 74.1
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 2.4e-27 126.3 77 80.5
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 6.9e-27 124.8 85 70.6
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 6.9e-27 124.8 85 70.6
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 2.0e-26 123.2 76 80.3
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 3.4e-26 122.5 66 86.4
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 1.7e-25 120.2 85 69.4
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 2.2e-25 119.8 76 76.3
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 6.4e-25 118.2 85 68.2
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 8.4e-25 117.9 85 69.4
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.1e-24 117.5 76 76.3
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 1.1e-24 117.5 85 68.2
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 1.4e-24 117.1 76 75.0
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 1.9e-24 116.7 85 67.1
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 2.4e-24 116.3 92 66.3
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 3.2e-24 115.9 85 67.1
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 3.2e-24 115.9 85 65.9
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 5.5e-24 115.2 85 67.1
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 7.1e-24 114.8 83 68.7
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 1.2e-23 114.0 85 64.7
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 1.2e-23 114.0 84 67.9
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 1.2e-23 114.0 87 65.5
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 2.1e-23 113.2 65 81.5
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 2.1e-23 113.2 85 62.4
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 4.6e-23 112.1 84 66.7
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 4.6e-23 112.1 84 65.5
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 4.6e-23 112.1 66 77.3
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 4.6e-23 112.1 85 64.7
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 6.0e-23 111.7 83 65.1
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 6.0e-23 111.7 84 66.7
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 6.0e-23 111.7 66 78.8
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 6.0e-23 111.7 66 78.8
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 6.0e-23 111.7 84 64.3
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 6.0e-23 111.7 85 63.5
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 7.9e-23 111.3 76 72.4
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 7.9e-23 111.3 76 72.4
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 7.9e-23 111.3 76 72.4
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 7.9e-23 111.3 85 63.5
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 7.9e-23 111.3 66 78.8
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 1.0e-22 110.9 85 62.4
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 1.0e-22 110.9 85 64.7
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 1.0e-22 110.9 66 78.8
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.0e-22 110.9 84 63.1
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.0e-22 110.9 65 78.5
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.0e-22 110.9 84 63.1
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.0e-22 110.9 65 78.5
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 1.0e-22 110.9 84 63.1
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 1.0e-22 110.9 65 78.5
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 1.0e-22 110.9 84 66.7
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 1.0e-22 110.9 84 64.3
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 1.0e-22 110.9 84 64.3
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 1.0e-22 110.9 84 64.3
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 1.3e-22 110.5 85 63.5
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 1.3e-22 110.5 84 64.3
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 1.3e-22 110.5 85 62.4
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 1.3e-22 110.5 66 77.3
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 1.3e-22 110.5 85 61.2
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 1.3e-22 110.5 84 64.3
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.3e-22 110.5 84 63.1
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.3e-22 110.5 83 63.9
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 1.3e-22 110.5 76 69.7
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 1.8e-22 110.2 66 77.3
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 1.8e-22 110.2 66 77.3
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 2.3e-22 109.8 85 62.4
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 3.0e-22 109.4 84 64.3
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 3.0e-22 109.4 76 69.7
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 3.0e-22 109.4 76 69.7
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 3.0e-22 109.4 76 69.7
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 3.0e-22 109.4 76 69.7
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 3.0e-22 109.4 76 69.7
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 3.0e-22 109.4 76 69.7
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 3.0e-22 109.4 85 62.4
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 3.0e-22 109.4 84 64.3
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 3.0e-22 109.4 85 63.5
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 3.9e-22 109.0 84 61.9
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 3.9e-22 109.0 66 77.3
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 3.9e-22 109.0 66 74.2
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 3.9e-22 109.0 85 62.4
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 3.9e-22 109.0 85 62.4
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 3.9e-22 109.0 66 74.2
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 6.7e-22 108.2 76 69.7
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 6.7e-22 108.2 84 63.1
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 6.7e-22 108.2 85 60.0
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 8.7e-22 107.8 65 78.5
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 8.7e-22 107.8 65 78.5
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 8.7e-22 107.8 75 66.7
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 8.7e-22 107.8 85 60.0
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 8.7e-22 107.8 76 69.7
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 1.1e-21 107.5 76 68.4
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 1.1e-21 107.5 76 68.4
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 1.1e-21 107.5 76 68.4
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 1.1e-21 107.5 75 70.7
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 1.1e-21 107.5 76 68.4
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 1.1e-21 107.5 76 68.4
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 1.1e-21 107.5 75 70.7
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 1.5e-21 107.1 65 76.9
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 1.5e-21 107.1 65 75.4
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 1.9e-21 106.7 85 60.0
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 1.9e-21 106.7 76 68.4
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 1.9e-21 106.7 75 70.7
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 2.5e-21 106.3 75 68.0
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 2.5e-21 106.3 66 72.7
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 3.3e-21 105.9 69 71.0
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 4.3e-21 105.5 75 68.0
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 9.6e-21 104.4 66 72.7
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 1.3e-20 104.0 66 72.7
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 1.6e-20 103.6 66 74.2
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 4.8e-20 102.1 85 55.3
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 1.1e-19 100.9 65 73.8
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 1.1e-19 100.9 76 64.5
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 1.1e-19 100.9 65 70.8
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 3.4e-18 95.9 62 72.6
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 5.8e-18 95.1 63 74.6
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 1.0e-14 84.3 71 59.2
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 2.3e-14 83.2 92 50.0
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 3.0e-14 82.8 71 57.7
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 3.0e-14 82.8 71 57.7
BolC9t54460H Brassica oleracea HOM05D004743 ORTHO05D106879 3.0e-14 82.8 45 95.6
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 6.7e-14 81.6 60 66.7
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.5e-13 80.5 71 56.3
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 2.5e-13 79.7 68 64.7
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 5.7e-13 78.6 59 57.6
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 5.3e-11 72.0 63 54.0
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 9.0e-11 71.2 79 54.4
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.3e-09 67.4 85 42.4
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 3.8e-09 65.9 47 66.0
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 5.0e-09 65.5 65 46.2
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 5.0e-09 65.5 48 62.5


User provided reference genes

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