Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27724 Brassica carinata HOM05D003212 ORTHO05D017537 1.8e-40 168.7 78 100.0
C05p37050 Brassica napus HOM05D003212 ORTHO05D017537 1.8e-40 168.7 78 100.0
C09p44450 Brassica napus HOM05D003212 ORTHO05D017537 1.8e-40 168.7 78 100.0
BraA10t44669Z Brassica rapa HOM05D003212 ORTHO05D017537 3.1e-37 157.9 78 93.6
BolC5t32459H Brassica oleracea HOM05D003212 ORTHO05D017537 1.0e-24 116.3 55 100.0
BolC8t52206H Brassica oleracea HOM05D003212 ORTHO05D017537 1.3e-19 99.4 78 69.2
BcaB05g24115 Brassica carinata HOM05D003212 ORTHO05D017537 2.3e-19 98.6 72 70.8
BcaB01g04040 Brassica carinata HOM05D003212 ORTHO05D017537 8.6e-19 96.7 72 70.8
BcaC03g15881 Brassica carinata HOM05D003212 ORTHO05D017586 7.2e-18 93.6 67 74.6
BcaC03g17911 Brassica carinata HOM05D003212 ORTHO05D017537 7.2e-18 93.6 67 73.1
BolC2t09647H Brassica oleracea HOM05D003212 ORTHO05D017586 4.0e-16 87.8 67 70.1
C02p36490 Brassica napus HOM05D002205 ORTHO05D017586 1.1e-10 69.7 54 70.4
Sp5g07950 Schrenkiella parvula HOM05D003212 ORTHO05D003959 9.5e-10 66.6 40 75.0
BcaB02g07736 Brassica carinata HOM05D003212 ORTHO05D003959 2.1e-09 65.5 40 75.0
BcaC02g09067 Brassica carinata HOM05D003212 ORTHO05D003959 2.1e-09 65.5 40 75.0
BcaC08g44683 Brassica carinata HOM05D003212 ORTHO05D003959 2.1e-09 65.5 40 75.0
A04p05360 Brassica napus HOM05D003212 ORTHO05D003959 2.1e-09 65.5 40 75.0
A07p22130 Brassica napus HOM05D003212 ORTHO05D003959 2.1e-09 65.5 40 75.0
C04p38050 Brassica napus HOM05D003212 ORTHO05D003959 2.1e-09 65.5 40 75.0
C06p22180 Brassica napus HOM05D003212 ORTHO05D003959 2.1e-09 65.5 40 75.0
BolC4t25379H Brassica oleracea HOM05D003212 ORTHO05D003959 2.1e-09 65.5 40 75.0
BolC6t37404H Brassica oleracea HOM05D003212 ORTHO05D003959 2.1e-09 65.5 40 75.0
BraA04t16236Z Brassica rapa HOM05D003212 ORTHO05D003959 2.1e-09 65.5 40 75.0
BraA07t29896Z Brassica rapa HOM05D003212 ORTHO05D003959 2.1e-09 65.5 40 75.0
Carub.0005s2109 Capsella rubella HOM05D003212 ORTHO05D003959 2.1e-09 65.5 40 75.0
AL5G35520 Arabidopsis lyrata HOM05D003212 ORTHO05D003959 4.7e-09 64.3 40 72.5
AT3G54470 Arabidopsis thaliana HOM05D003212 ORTHO05D003959 4.7e-09 64.3 40 72.5
CDE08G1532 Ceratophyllum demersum HOM05D003212 ORTHO05D003959 4.7e-09 64.3 43 67.4
CDE09G0923 Ceratophyllum demersum HOM05D003212 ORTHO05D003959 6.2e-09 63.9 43 67.4
Dinv32034 Davidia involucrata HOM05D003212 ORTHO05D003959 8.0e-09 63.5 39 74.4
BraA10t43114Z Brassica rapa HOM05D002205 ORTHO05D017586 1.0e-08 63.2 45 75.6
EL10Ac2g02822 Beta vulgaris HOM05D003212 ORTHO05D003959 1.4e-08 62.8 40 70.0
AUR62026849 Chenopodium quinoa HOM05D003212 ORTHO05D003959 1.4e-08 62.8 40 70.0
AUR62037200 Chenopodium quinoa HOM05D003212 ORTHO05D003959 1.4e-08 62.8 40 70.0
Hund15723 Selenicereus undatus HOM05D003212 ORTHO05D003959 1.4e-08 62.8 42 69.0
Eucgr.G03242 Eucalyptus grandis HOM05D003212 ORTHO05D003959 1.8e-08 62.4 39 74.4
Sc11g0006540 Simmondsia chinensis HOM05D003212 ORTHO05D003959 1.8e-08 62.4 39 71.8
DCAR_006596 Daucus carota HOM05D003212 ORTHO05D003959 2.3e-08 62.0 43 65.1
Atru.chr12.1389 Acer truncatum HOM05D003212 ORTHO05D003959 3.1e-08 61.6 39 71.8
CSS0010475 Camellia sinensis var. sinensis HOM05D003212 ORTHO05D003959 3.1e-08 61.6 39 71.8
CSS0011806 Camellia sinensis var. sinensis HOM05D003212 ORTHO05D003959 3.1e-08 61.6 39 71.8
CARHR164370 Cardamine hirsuta HOM05D003212 ORTHO05D003959 3.1e-08 61.6 40 70.0
Thhalv10010334m.g Eutrema salsugineum HOM05D003212 ORTHO05D003959 3.1e-08 61.6 40 70.0
Gohir.A04G028000 Gossypium hirsutum HOM05D003212 ORTHO05D003959 3.1e-08 61.6 39 71.8
Gohir.D05G360100 Gossypium hirsutum HOM05D003212 ORTHO05D003959 3.1e-08 61.6 39 71.8
Gorai.009G432600 Gossypium raimondii HOM05D003212 ORTHO05D003959 3.1e-08 61.6 39 71.8
Hma1.2p1_0384F.1_g141010 Hydrangea macrophylla HOM05D003212 ORTHO05D003959 3.1e-08 61.6 39 71.8
Sed0011268 Sechium edule HOM05D003212 ORTHO05D003959 3.1e-08 61.6 39 71.8
THA.LOC104824191 Tarenaya hassleriana HOM05D003212 ORTHO05D003959 3.1e-08 61.6 40 70.0
Atru.chr12.1386 Acer truncatum HOM05D003212 ORTHO05D003959 4.0e-08 61.2 39 71.8
AUR62003806 Chenopodium quinoa HOM05D003212 ORTHO05D003959 4.0e-08 61.2 40 67.5
QL04p014524 Quercus lobata HOM05D003212 ORTHO05D003959 4.0e-08 61.2 39 71.8
QL04p014894 Quercus lobata HOM05D003212 ORTHO05D003959 4.0e-08 61.2 39 71.8
Solyc11g068830.2 Solanum lycopersicum HOM05D003212 ORTHO05D003959 4.0e-08 61.2 39 71.8
Sopen11g027550 Solanum pennellii HOM05D003212 ORTHO05D003959 4.0e-08 61.2 39 71.8
PGSC0003DMG400019620 Solanum tuberosum HOM05D003212 ORTHO05D003959 4.0e-08 61.2 39 71.8
BcaC03g14864 Brassica carinata HOM05D002205 ORTHO05D018573 5.2e-08 60.8 40 85.0
Haze_03071 Corylus avellana HOM05D003212 ORTHO05D003959 5.2e-08 60.8 39 69.2
GSVIVG01000650001 Vitis vinifera HOM05D003212 ORTHO05D003959 5.2e-08 60.8 40 67.5
BcaC08g44593 Brassica carinata HOM05D002205 ORTHO05D017586 6.8e-08 60.5 44 75.0
A07p39660 Brassica napus HOM05D002205 ORTHO05D018573 6.8e-08 60.5 40 85.0
A10p19760 Brassica napus HOM05D002205 ORTHO05D018573 6.8e-08 60.5 40 85.0
C06p20640 Brassica napus HOM05D002205 ORTHO05D017586 6.8e-08 60.5 44 75.0
AUR62001997 Chenopodium quinoa HOM05D003212 ORTHO05D003959 6.8e-08 60.5 40 67.5
ClCG01G007740 Citrullus lanatus HOM05D003212 ORTHO05D003959 6.8e-08 60.5 39 69.2
COL.COLO4_09453 Corchorus olitorius HOM05D003212 ORTHO05D003959 6.8e-08 60.5 39 69.2
MELO3C005122.2 Cucumis melo HOM05D003212 ORTHO05D003959 6.8e-08 60.5 39 69.2
CsaV3_5G024820 Cucumis sativus L. HOM05D003212 ORTHO05D003959 6.8e-08 60.5 39 69.2
PGR031G0586 Punica granatum HOM05D003212 ORTHO05D003959 6.8e-08 60.5 39 69.2
HPP92_003231 Vanilla planifolia HOM05D003212 ORTHO05D003959 6.8e-08 60.5 40 67.5
HPP92_003235 Vanilla planifolia HOM05D003212 ORTHO05D003959 6.8e-08 60.5 40 67.5
Zm00001eb140940 Zea mays HOM05D003212 ORTHO05D003959 6.8e-08 60.5 39 71.8
Aqoxy2G00340 Aquilegia oxysepala HOM05D003212 ORTHO05D003959 8.9e-08 60.1 40 67.5
Lsat_1_v5_gn_5_157360 Lactuca sativa HOM05D003212 ORTHO05D003959 8.9e-08 60.1 39 69.2
Manes.11G004200 Manihot esculenta HOM05D003212 ORTHO05D003959 8.9e-08 60.1 39 69.2
Nn7g36634 Nelumbo nucifera HOM05D003212 ORTHO05D003959 8.9e-08 60.1 40 67.5
Atru.chr12.1029 Acer truncatum HOM05D003212 ORTHO05D003959 1.5e-07 59.3 34 79.4
Aa31LG1G5360 Aethionema arabicum HOM05D003212 ORTHO05D003959 1.5e-07 59.3 40 65.0
C08p27660 Brassica napus HOM05D002205 ORTHO05D018573 1.5e-07 59.3 40 82.5
CANSAT80G2392 Cannabis sativa HOM05D003212 ORTHO05D003959 1.5e-07 59.3 39 69.2
Duzib213G0398 Durio zibethinus HOM05D003212 ORTHO05D003959 1.5e-07 59.3 39 69.2
Duzib268G1229 Durio zibethinus HOM05D003212 ORTHO05D003959 1.5e-07 59.3 39 69.2
Gohir.A13G144600 Gossypium hirsutum HOM05D003212 ORTHO05D003959 1.5e-07 59.3 39 69.2
Gohir.D13G149300 Gossypium hirsutum HOM05D003212 ORTHO05D003959 1.5e-07 59.3 39 69.2
Gorai.013G167000 Gossypium raimondii HOM05D003212 ORTHO05D003959 1.5e-07 59.3 39 69.2
Lj7A581T52 Lonicera japonica HOM05D003212 ORTHO05D003959 1.5e-07 59.3 39 69.2
Oeu002655.1 Olea europaea HOM05D003212 ORTHO05D003959 1.5e-07 59.3 39 69.2
PSO384G1532 Papaver somniferum HOM05D003212 ORTHO05D003959 1.5e-07 59.3 40 65.0
Psat5g219440 Pisum sativum HOM05D003212 ORTHO05D003959 1.5e-07 59.3 39 69.2
Potri.001G026300 Populus trichocarpa HOM05D003212 ORTHO05D003959 1.5e-07 59.3 39 69.2
Prupe.2G032600 Prunus persica HOM05D003212 ORTHO05D003959 1.5e-07 59.3 39 69.2
Rhsim01G0123800 Rhododendron simsii HOM05D003212 ORTHO05D003959 1.5e-07 59.3 39 69.2
Sabra01G0019400 Salix brachista HOM05D003212 ORTHO05D003959 1.5e-07 59.3 39 69.2
vmacro12692 Vaccinium macrocarpon HOM05D003212 ORTHO05D003959 1.5e-07 59.3 39 69.2
Ca_18881_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 2.0e-07 58.9 39 69.2
Ca_23514_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 2.0e-07 58.9 39 69.2
Ciclev10001014m.g Citrus clementina HOM05D003212 ORTHO05D003959 2.0e-07 58.9 39 69.2
Ciclev10004916m.g Citrus clementina HOM05D003212 ORTHO05D003959 2.0e-07 58.9 39 69.2
FvH4_7g02810 Fragaria vesca HOM05D003212 ORTHO05D003959 2.0e-07 58.9 39 69.2
FAN01G2682 Fragaria x ananassa HOM05D003212 ORTHO05D003959 2.0e-07 58.9 39 69.2
FAN03G0414 Fragaria x ananassa HOM05D003212 ORTHO05D003959 2.0e-07 58.9 39 69.2
FAN06G3951 Fragaria x ananassa HOM05D003212 ORTHO05D003959 2.0e-07 58.9 39 69.2
FAN10G3499 Fragaria x ananassa HOM05D003212 ORTHO05D003959 2.0e-07 58.9 39 69.2
HanXRQChr01g0008251 Helianthus annuus HOM05D003212 ORTHO05D003959 2.0e-07 58.9 39 66.7
Medtr1g025060 Medicago truncatula HOM05D003212 ORTHO05D003959 2.0e-07 58.9 39 69.2
Medtr3g017580 Medicago truncatula HOM05D003212 ORTHO05D003959 2.0e-07 58.9 39 69.2
Medtr8g038390 Medicago truncatula HOM05D003212 ORTHO05D003959 2.0e-07 58.9 39 69.2
Oeu003925.2 Olea europaea HOM05D003212 ORTHO05D003959 2.0e-07 58.9 39 69.2
Oeu056551.1 Olea europaea HOM05D003212 ORTHO05D003959 2.0e-07 58.9 39 69.2
Peaxi162Scf00010g03311 Petunia axillaris HOM05D003212 ORTHO05D003959 2.0e-07 58.9 39 69.2
Peaxi162Scf01010g00217 Petunia axillaris HOM05D003212 ORTHO05D003959 2.0e-07 58.9 39 69.2
Phvul.005G029300 Phaseolus vulgaris HOM05D003212 ORTHO05D003959 2.0e-07 58.9 39 69.2
RcHm_v2.0_Chr1g0323241 Rosa chinensis HOM05D003212 ORTHO05D003959 2.0e-07 58.9 39 69.2
Sed0013182 Sechium edule HOM05D003212 ORTHO05D003959 2.0e-07 58.9 39 66.7
TPR.G36892 Trifolium pratense HOM05D003212 ORTHO05D003959 2.0e-07 58.9 39 69.2
arahy.Tifrunner.gnm1.ann1.HRMJ8R Arachis hypogaea HOM05D003212 ORTHO05D003959 2.6e-07 58.5 39 69.2
arahy.Tifrunner.gnm1.ann1.HVGJ4H Arachis hypogaea HOM05D003212 ORTHO05D003959 2.6e-07 58.5 39 69.2
CiPaw.14G006800 Carya illinoinensis HOM05D003212 ORTHO05D003959 2.6e-07 58.5 39 69.2
Lalb_Chr04g0264051 Lupinus albus HOM05D003212 ORTHO05D003959 2.6e-07 58.5 39 69.2
Lalb_Chr14g0366121 Lupinus albus HOM05D003212 ORTHO05D003959 2.6e-07 58.5 39 69.2
TWI38G0920 Tripterygium wilfordii HOM05D003212 ORTHO05D003959 2.6e-07 58.5 39 69.2
CAN.G745.39 Capsicum annuum HOM05D003212 ORTHO05D003959 3.4e-07 58.2 39 69.2
Cc02_g26670 Coffea canephora HOM05D003212 ORTHO05D003959 3.4e-07 58.2 39 66.7
Nitab4.5_0000893g0050 Nicotiana tabacum HOM05D003212 ORTHO05D003959 3.4e-07 58.2 39 69.2
Nitab4.5_0001135g0170 Nicotiana tabacum HOM05D003212 ORTHO05D003959 3.4e-07 58.2 39 69.2
PSO339G4798 Papaver somniferum HOM05D003212 ORTHO05D003959 3.4e-07 58.2 40 65.0
Hund13345 Selenicereus undatus HOM05D003212 ORTHO05D003959 3.4e-07 58.2 40 65.0
Thecc.07G075400 Theobroma cacao HOM05D003212 ORTHO05D003959 3.4e-07 58.2 39 66.7
CAN.G919.25 Capsicum annuum HOM05D003212 ORTHO05D003959 4.4e-07 57.8 39 66.7
MD09G1262400 Malus domestica HOM05D003212 ORTHO05D003959 4.4e-07 57.8 39 66.7
Potri.003G198501 Populus trichocarpa HOM05D003212 ORTHO05D003959 4.4e-07 57.8 39 66.7
Potri.T125906 Populus trichocarpa HOM05D003212 ORTHO05D003959 4.4e-07 57.8 39 66.7
Sabra03G0147800 Salix brachista HOM05D003212 ORTHO05D003959 4.4e-07 57.8 39 66.7
TAR369G1042 Trochodendron aralioides HOM05D003212 ORTHO05D003959 4.4e-07 57.8 40 65.0
ECA232G0145 Erigeron canadensis HOM05D003212 ORTHO05D003959 5.8e-07 57.4 39 66.7
ECA248G3712 Erigeron canadensis HOM05D003212 ORTHO05D003959 5.8e-07 57.4 39 66.7
Glyma.11G154200 Glycine max HOM05D003212 ORTHO05D003959 5.8e-07 57.4 39 66.7
Glyma.13G198700 Glycine max HOM05D003212 ORTHO05D003959 5.8e-07 57.4 39 66.7
Lj3g0024329 Lotus japonicus HOM05D003212 ORTHO05D003959 5.8e-07 57.4 39 66.7
Os01g0951200 Oryza sativa ssp. japonica HOM05D003212 ORTHO05D003959 5.8e-07 57.4 39 66.7
Phvul.011G207800 Phaseolus vulgaris HOM05D003212 ORTHO05D003959 5.8e-07 57.4 39 66.7
VMungo1080G0024 Vigna mungo HOM05D003212 ORTHO05D003959 5.8e-07 57.4 39 66.7
GSVIVG01000654001 Vitis vinifera HOM05D003212 ORTHO05D003959 5.8e-07 57.4 40 62.5
SGA_v2.0_scaffold124G33627 Striga asiatica HOM05D003212 ORTHO05D003959 7.5e-07 57.0 39 66.7
Zm00001eb140930 Zea mays HOM05D003212 ORTHO05D003959 7.5e-07 57.0 39 66.7
MSTRG.20521 Avicennia marina HOM05D003212 ORTHO05D003959 9.8e-07 56.6 39 64.1
A02p18250 Brassica napus HOM05D002205 ORTHO05D018573 9.8e-07 56.6 49 69.4
Lj3g0002083 Lotus japonicus HOM05D003212 ORTHO05D003959 9.8e-07 56.6 39 66.7
Os01g0951400 Oryza sativa ssp. japonica HOM05D003212 ORTHO05D003959 9.8e-07 56.6 39 66.7
BolC8t50387H Brassica oleracea HOM05D002205 ORTHO05D018573 1.3e-06 56.2 40 80.0
Migut.B01220 Erythranthe guttata HOM05D003212 ORTHO05D003959 1.3e-06 56.2 39 66.7
Psat0s1718g0040 Pisum sativum HOM05D003212 ORTHO05D003959 1.3e-06 56.2 39 64.1
MD17G1257300 Malus domestica HOM05D003212 ORTHO05D003959 1.7e-06 55.8 39 64.1
Actinidia21523 Actinidia chinensis HOM05D003212 ORTHO05D003959 2.2e-06 55.5 39 64.1
MSTRG.16992 Avicennia marina HOM05D003212 ORTHO05D003959 2.2e-06 55.5 39 64.1
Lalb_Chr03g0032831 Lupinus albus HOM05D003212 ORTHO05D003959 2.2e-06 55.5 39 64.1
SalBow5G4847 Salvia bowleyana HOM05D003212 ORTHO05D003959 2.2e-06 55.5 39 64.1
SalBow5G1921 Salvia bowleyana HOM05D003212 ORTHO05D003959 2.9e-06 55.1 39 64.1
SalBow5G3827 Salvia bowleyana HOM05D003212 ORTHO05D003959 2.9e-06 55.1 39 64.1
VMungo1127G0513 Vigna mungo HOM05D003212 ORTHO05D003959 2.9e-06 55.1 39 64.1
VMungo1215G0810 Vigna mungo HOM05D003212 ORTHO05D003959 2.9e-06 55.1 39 64.1
Ca_10473_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 3.7e-06 54.7 39 64.1
ATR0789G118 Amborella trichopoda HOM05D003212 ORTHO05D003959 4.9e-06 54.3 40 60.0
arahy.Tifrunner.gnm1.ann1.28N5NC Arachis hypogaea HOM05D003212 ORTHO05D003959 4.9e-06 54.3 39 64.1
arahy.Tifrunner.gnm1.ann1.J24RTT Arachis hypogaea HOM05D003212 ORTHO05D003959 4.9e-06 54.3 39 64.1
Cpa.g.sc223.10 Carica papaya HOM05D003212 ORTHO05D003959 4.9e-06 54.3 39 61.5
Ah.12g062950 Amaranthus hybridus HOM05D003212 ORTHO05D003959 6.4e-06 53.9 40 60.0
HanXRQChr13g0406671 Helianthus annuus HOM05D003212 ORTHO05D003959 8.3e-06 53.5 39 59.0
VMungo1309G2010 Vigna mungo HOM05D003212 ORTHO05D003959 8.3e-06 53.5 39 61.5


User provided reference genes

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