Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p44210 Brassica napus HOM05D006469 ORTHO05D008034 7.8e-166 587.0 293 100.0
BcaC04g20386 Brassica carinata HOM05D006469 ORTHO05D008034 2.4e-122 442.6 258 89.5
BcaC04g20390 Brassica carinata HOM05D006469 ORTHO05D008034 2.4e-122 442.6 258 89.5
BolC9t57293H Brassica oleracea HOM05D006469 ORTHO05D008034 2.8e-99 365.9 218 88.5
A01p02720 Brassica napus HOM05D006469 ORTHO05D008034 7.3e-79 298.1 244 68.9
BraA01t00258Z Brassica rapa HOM05D006469 ORTHO05D008034 3.6e-78 295.8 253 66.8
BcaC03g14989 Brassica carinata HOM05D006469 ORTHO05D008034 1.9e-74 283.5 157 91.7
BcaNung00773 Brassica carinata HOM05D006469 ORTHO05D008034 4.3e-71 272.3 233 67.0
C01p03020 Brassica napus HOM05D006469 ORTHO05D008034 1.1e-69 267.7 235 66.8
BolC1t00288H Brassica oleracea HOM05D006469 ORTHO05D008034 5.2e-69 265.4 235 66.0
AT4G35987 Arabidopsis thaliana HOM05D006469 ORTHO05D008034 2.9e-67 259.6 251 60.6
CARHR244380 Cardamine hirsuta HOM05D006469 ORTHO05D008034 1.3e-64 250.8 234 63.2
Carub.0007s0423 Capsella rubella HOM05D006469 ORTHO05D008034 2.3e-64 250.0 234 62.0
Thhalv10025786m.g Eutrema salsugineum HOM05D006469 ORTHO05D008034 5.1e-64 248.8 239 61.1
Sp7g33770 Schrenkiella parvula HOM05D006469 ORTHO05D008034 8.6e-64 248.1 230 62.2
Aa31LG6G12960 Aethionema arabicum HOM05D006469 ORTHO05D008034 3.2e-58 229.6 234 57.7
BolC2t08600H Brassica oleracea HOM05D006469 ORTHO05D008034 2.1e-49 200.3 140 78.6
RcHm_v2.0_Chr2g0099281 Rosa chinensis HOM05D006469 ORTHO05D008034 3.9e-48 196.1 231 50.6
Gohir.A02G171200 Gossypium hirsutum HOM05D006469 ORTHO05D008034 6.6e-48 195.3 296 42.9
Gohir.D03G008900 Gossypium hirsutum HOM05D006469 ORTHO05D008034 2.5e-47 193.4 297 42.8
Phvul.003G263600 Phaseolus vulgaris HOM05D006469 ORTHO05D008034 3.3e-47 193.0 250 46.0
Manes.02G105600 Manihot esculenta HOM05D006469 ORTHO05D008034 9.6e-47 191.4 232 48.7
Gorai.003G009100 Gossypium raimondii HOM05D006469 ORTHO05D008034 1.3e-46 191.0 297 42.4
FvH4_1g11701 Fragaria vesca HOM05D006469 ORTHO05D008034 1.6e-46 190.7 234 47.9
Haze_03751 Corylus avellana HOM05D006469 ORTHO05D008034 2.1e-46 190.3 259 45.9
MD02G1130100 Malus domestica HOM05D006469 ORTHO05D008034 2.8e-46 189.9 235 48.1
Lj4A220G94 Lonicera japonica HOM05D006469 ORTHO05D008034 4.8e-46 189.1 263 45.6
Thecc.01G016800 Theobroma cacao HOM05D006469 ORTHO05D008034 4.8e-46 189.1 295 42.7
Glyma.02G047300 Glycine max HOM05D006469 ORTHO05D008034 2.4e-45 186.8 240 46.7
VMungo0251G1912 Vigna mungo HOM05D006469 ORTHO05D008034 4.0e-45 186.0 270 43.3
Psat4g100640 Pisum sativum HOM05D006469 ORTHO05D008034 9.0e-45 184.9 250 44.4
QL06p050655 Quercus lobata HOM05D006469 ORTHO05D008034 1.2e-44 184.5 249 45.0
QL06p050760 Quercus lobata HOM05D006469 ORTHO05D008034 1.5e-44 184.1 249 45.0
Ciclev10026134m.g Citrus clementina HOM05D006469 ORTHO05D008034 2.0e-44 183.7 249 46.2
Medtr8g075480 Medicago truncatula HOM05D006469 ORTHO05D008034 2.0e-44 183.7 252 44.0
FAN19G1692 Fragaria x ananassa HOM05D006469 ORTHO05D008034 2.6e-44 183.3 240 45.4
Sabra07G0048900 Salix brachista HOM05D006469 ORTHO05D008034 2.6e-44 183.3 239 45.2
TAR376G0066 Trochodendron aralioides HOM05D006469 ORTHO05D008034 2.6e-44 183.3 247 44.5
TPR.G24083 Trifolium pratense HOM05D006469 ORTHO05D008034 5.8e-44 182.2 263 42.6
TWI73G0981 Tripterygium wilfordii HOM05D006469 ORTHO05D008034 5.8e-44 182.2 314 39.2
Migut.L00672 Erythranthe guttata HOM05D006469 ORTHO05D008034 2.2e-43 180.3 233 45.5
Lj4g0017154 Lotus japonicus HOM05D006469 ORTHO05D008034 4.9e-43 179.1 251 42.2
Potri.007G057000 Populus trichocarpa HOM05D006469 ORTHO05D008034 4.9e-43 179.1 239 44.4
CANSAT25G3476 Cannabis sativa HOM05D006469 ORTHO05D008034 6.4e-43 178.7 254 43.3
Lalb_Chr05g0229831 Lupinus albus HOM05D006469 ORTHO05D008034 6.4e-43 178.7 245 44.1
Dinv33650 Davidia involucrata HOM05D006469 ORTHO05D008034 2.4e-42 176.8 249 44.2
GSVIVG01018765001 Vitis vinifera HOM05D006469 ORTHO05D008034 2.4e-42 176.8 239 43.5
Lsat_1_v5_gn_2_76041 Lactuca sativa HOM05D006469 ORTHO05D008034 3.2e-42 176.4 240 46.7
arahy.Tifrunner.gnm1.ann1.DLPQ3A Arachis hypogaea HOM05D006469 ORTHO05D008034 5.4e-42 175.6 249 43.8
Migut.L00699 Erythranthe guttata HOM05D006469 ORTHO05D008034 7.1e-42 175.3 234 44.9
Atru.chr3.815 Acer truncatum HOM05D006469 ORTHO05D008034 9.3e-42 174.9 240 45.4
CANSAT25G3534 Cannabis sativa HOM05D006469 ORTHO05D008034 1.6e-41 174.1 253 42.7
Sopen03g006220 Solanum pennellii HOM05D006469 ORTHO05D008034 1.6e-41 174.1 239 43.9
Solyc03g033470.3 Solanum lycopersicum HOM05D006469 ORTHO05D008034 2.1e-41 173.7 239 43.9
arahy.Tifrunner.gnm1.ann1.S7P5W6 Arachis hypogaea HOM05D006469 ORTHO05D008034 4.6e-41 172.6 249 43.4
MELO3C007914.2 Cucumis melo HOM05D006469 ORTHO05D008034 4.6e-41 172.6 241 44.4
CAN.G1817.1 Capsicum annuum HOM05D006469 ORTHO05D008034 6.0e-41 172.2 248 41.1
Sc07g0001050 Simmondsia chinensis HOM05D006469 ORTHO05D008034 6.0e-41 172.2 232 45.7
QL11p035074 Quercus lobata HOM05D006469 ORTHO05D008034 1.0e-40 171.4 299 38.8
SalBow5G1778 Salvia bowleyana HOM05D006469 ORTHO05D008034 1.3e-40 171.0 242 43.4
THA.LOC104807502 Tarenaya hassleriana HOM05D006469 ORTHO05D008034 1.3e-40 171.0 140 65.7
Cfa006983 Carpinus fangiana HOM05D006469 ORTHO05D008034 1.8e-40 170.6 227 45.8
Eucgr.I02338 Eucalyptus grandis HOM05D006469 ORTHO05D008034 1.8e-40 170.6 255 43.5
FAN26G2561 Fragaria x ananassa HOM05D006469 ORTHO05D008034 1.8e-40 170.6 212 47.6
CiPaw.07G059900 Carya illinoinensis HOM05D006469 ORTHO05D008034 3.0e-40 169.9 285 38.9
HanXRQChr04g0119941 Helianthus annuus HOM05D006469 ORTHO05D008034 3.9e-40 169.5 242 45.0
PGR102G1692 Punica granatum HOM05D006469 ORTHO05D008034 3.9e-40 169.5 245 44.1
CsaV3_6G047220 Cucumis sativus L. HOM05D006469 ORTHO05D008034 6.7e-40 168.7 241 43.6
Cc07_g10870 Coffea canephora HOM05D006469 ORTHO05D008034 8.7e-40 168.3 258 43.0
PSO170G4882 Papaver somniferum HOM05D006469 ORTHO05D008034 1.1e-39 167.9 250 43.2
PGSC0003DMG402022530 Solanum tuberosum HOM05D006469 ORTHO05D008034 1.1e-39 167.9 239 42.3
Prupe.7G169600 Prunus persica HOM05D006469 ORTHO05D008034 2.5e-39 166.8 171 55.6
Nn6g32040 Nelumbo nucifera HOM05D006469 ORTHO05D008034 3.3e-39 166.4 254 41.3
MSTRG.3610 Avicennia marina HOM05D006469 ORTHO05D008034 4.3e-39 166.0 245 42.9
FAN23G0491 Fragaria x ananassa HOM05D000153 ORTHO05D000118 9.6e-39 164.9 245 42.4
Cpa.g.sc6.265 Carica papaya HOM05D006469 ORTHO05D008034 1.3e-35 154.5 174 51.1
Os03g0243800 Oryza sativa ssp. japonica HOM05D006469 ORTHO05D008034 1.3e-35 154.5 254 39.0
PSO700G0153 Papaver somniferum HOM05D006469 ORTHO05D008034 1.3e-35 154.5 212 43.9
AUR62029479 Chenopodium quinoa HOM05D006469 ORTHO05D008034 3.8e-35 152.9 237 40.9
Oeu005141.2 Olea europaea HOM05D006469 ORTHO05D008034 1.1e-34 151.4 238 39.5
Actinidia17434 Actinidia chinensis HOM05D006469 ORTHO05D008034 5.5e-34 149.1 257 40.9
EL10Ac6g15486 Beta vulgaris HOM05D006469 ORTHO05D008034 7.1e-34 148.7 254 40.2
Zm00001eb398850 Zea mays HOM05D006469 ORTHO05D008034 1.6e-33 147.5 252 38.9
ECA238G1797 Erigeron canadensis HOM05D006469 ORTHO05D008034 1.3e-32 144.4 258 38.8
C02p25250 Brassica napus HOM05D006469 ORTHO05D008034 1.8e-32 144.1 82 95.1
Aqoxy5G01802 Aquilegia oxysepala HOM05D006469 ORTHO05D008034 3.3e-31 139.8 140 50.7
Hma1.2p1_0258F.1_g104050 Hydrangea macrophylla HOM05D006469 ORTHO05D008034 9.6e-31 138.3 140 52.9
Hund14051 Selenicereus undatus HOM05D006469 ORTHO05D008034 1.3e-30 137.9 195 44.1
SGA_v2.0_scaffold45G17085 Striga asiatica HOM05D006469 ORTHO05D008034 1.3e-30 137.9 332 32.2
Sed0020941 Sechium edule HOM05D006469 ORTHO05D008034 6.2e-30 135.6 146 50.7
MBI05_g33508_MAGBIO Magnolia biondii HOM05D006469 ORTHO05D008034 6.9e-29 132.1 140 50.0
unitig_46.g18721 Utricularia gibba HOM05D006469 ORTHO05D008034 6.9e-29 132.1 216 40.3
Ca_22385_v3 Cicer arietinum L. HOM05D006469 ORTHO05D008034 9.0e-29 131.7 128 53.9
CSS0000310 Camellia sinensis var. sinensis HOM05D006469 ORTHO05D008034 1.5e-28 131.0 229 41.5
CDE02G4243 Ceratophyllum demersum HOM05D006469 ORTHO05D008034 3.4e-28 129.8 246 37.0
AUR62003357 Chenopodium quinoa HOM05D006469 ORTHO05D008034 5.8e-28 129.0 140 48.6
CSS0021178 Camellia sinensis var. sinensis HOM05D006469 ORTHO05D008034 1.0e-27 128.3 229 41.0
Ah.03g148920 Amaranthus hybridus HOM05D006469 ORTHO05D008034 1.7e-27 127.5 163 47.9
Mapoly0087s0053 Marchantia polymorpha HOM05D006469 ORTHO05D008034 2.2e-27 127.1 274 32.5
Hma1.2p1_0258F.1_g104040 Hydrangea macrophylla HOM05D006469 ORTHO05D008034 6.5e-27 125.6 120 54.2
ClCG01G020380 Citrullus lanatus HOM05D000348 ORTHO05D000244 2.5e-26 123.6 268 35.4
Pp3c16_25190 Physcomitrium patens HOM05D006469 ORTHO05D008034 2.5e-26 123.6 266 32.0
Nitab4.5_0003548g0050 Nicotiana tabacum HOM05D006469 ORTHO05D008034 3.2e-26 123.2 205 38.0
Nitab4.5_0000864g0140 Nicotiana tabacum HOM05D006469 ORTHO05D008034 4.6e-25 119.4 263 34.2
Actinidia22967 Actinidia chinensis HOM05D006469 ORTHO05D008034 2.3e-24 117.1 191 39.8
ATR0810G135 Amborella trichopoda HOM05D006469 ORTHO05D008034 5.1e-24 115.9 189 41.3
Manes.01G147000 Manihot esculenta HOM05D006469 ORTHO05D008034 4.5e-20 102.8 209 36.4
Nitab4.5_0008011g0040 Nicotiana tabacum HOM05D006469 ORTHO05D008034 1.3e-19 101.3 267 30.7
SMO361G0665 Selaginella moellendorffii HOM05D006469 ORTHO05D008034 2.2e-19 100.5 135 40.0
Peaxi162Scf00328g00828 Petunia axillaris HOM05D006469 ORTHO05D008034 2.3e-16 90.5 241 32.4
Sabra05G0092400 Salix brachista HOM05D006469 ORTHO05D008034 5.9e-12 75.9 155 34.8
Duzib147G1015 Durio zibethinus HOM05D006469 ORTHO05D008034 1.0e-11 75.1 241 30.3
DCAR_021507 Daucus carota HOM05D006469 ORTHO05D008034 3.2e-10 70.1 241 25.7
Nitab4.5_0000438g0170 Nicotiana tabacum HOM05D006469 ORTHO05D008034 2.0e-07 60.8 71 50.7
COL.COLO4_22441 Corchorus olitorius HOM05D006469 ORTHO05D008034 4.4e-07 59.7 77 46.8


User provided reference genes

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