Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 2.1e-158 562.4 292 100.0
BolC9t57241H Brassica oleracea HOM05D003640 ORTHO05D004439 6.5e-88 328.2 257 73.5
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 4.3e-63 245.7 228 63.6
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 1.1e-61 241.1 226 63.7
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 1.8e-61 240.4 245 60.4
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 2.3e-61 240.0 219 65.3
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 2.0e-60 236.9 209 66.0
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 2.4e-58 229.9 226 62.8
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 1.2e-57 227.6 209 64.6
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 1.7e-56 223.8 228 60.5
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 1.1e-55 221.1 206 61.7
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 4.3e-55 219.2 208 61.5
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 6.2e-54 215.3 197 66.0
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 1.1e-53 214.5 293 48.8
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 2.3e-53 213.4 210 60.0
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 3.1e-53 213.0 221 57.9
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 2.9e-51 206.5 318 45.6
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 3.3e-47 193.0 180 60.0
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 5.6e-47 192.2 232 53.9
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 1.4e-45 187.6 291 45.7
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 5.8e-44 182.2 248 49.2
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 1.7e-43 180.6 212 50.5
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 1.1e-42 177.9 257 45.5
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 1.9e-42 177.2 253 45.1
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 5.4e-42 175.6 213 50.7
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 7.1e-42 175.3 253 43.9
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 1.2e-41 174.5 289 44.3
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 1.2e-41 174.5 210 49.0
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 2.7e-41 173.3 253 44.3
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 2.7e-41 173.3 253 44.3
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 3.5e-41 172.9 247 44.5
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 6.0e-41 172.2 212 50.5
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 1.7e-40 170.6 235 46.8
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 3.0e-40 169.9 213 50.7
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 5.1e-40 169.1 214 49.1
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 5.1e-40 169.1 214 48.6
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 6.6e-40 168.7 210 49.0
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 6.6e-40 168.7 256 42.6
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 6.6e-40 168.7 256 42.6
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 1.1e-39 167.9 285 41.1
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 1.9e-39 167.2 210 48.6
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 2.5e-39 166.8 295 40.0
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 2.5e-39 166.8 213 49.8
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 7.3e-39 165.2 223 48.9
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 7.3e-39 165.2 257 42.0
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 9.6e-39 164.9 252 43.3
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 9.6e-39 164.9 208 48.1
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 1.3e-38 164.5 245 44.1
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 1.3e-38 164.5 221 46.6
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.6e-38 164.1 292 40.1
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 2.1e-38 163.7 214 46.7
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 2.8e-38 163.3 251 43.0
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 2.8e-38 163.3 251 43.8
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 3.6e-38 162.9 210 46.7
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 6.2e-38 162.2 211 45.0
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 6.2e-38 162.2 216 45.8
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 6.2e-38 162.2 213 47.9
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 8.1e-38 161.8 177 53.1
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 8.1e-38 161.8 210 46.7
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 3.1e-37 159.8 211 46.9
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 3.1e-37 159.8 214 48.1
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 4.0e-37 159.5 203 47.8
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 4.0e-37 159.5 278 40.3
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 4.0e-37 159.5 212 46.2
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 5.3e-37 159.1 253 42.7
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 6.9e-37 158.7 214 47.7
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 6.9e-37 158.7 210 46.2
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 6.9e-37 158.7 261 43.3
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 9.0e-37 158.3 211 47.4
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 9.0e-37 158.3 214 44.9
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 9.0e-37 158.3 278 42.1
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 9.0e-37 158.3 258 42.2
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 1.2e-36 157.9 255 43.5
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.2e-36 157.9 201 48.8
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 2.0e-36 157.1 208 45.7
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 3.4e-36 156.4 254 43.7
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 4.5e-36 156.0 213 47.9
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 5.8e-36 155.6 208 46.2
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 9.9e-36 154.8 210 45.7
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.7e-35 154.1 254 43.3
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 2.2e-35 153.7 254 42.9
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 2.2e-35 153.7 213 46.5
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 3.8e-35 152.9 164 54.3
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 3.8e-35 152.9 254 42.5
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 4.9e-35 152.5 165 53.9
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 6.4e-35 152.1 123 65.9
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 1.4e-34 151.0 298 38.6
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 1.4e-34 151.0 210 44.3
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.9e-34 150.6 212 46.2
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 2.4e-34 150.2 208 43.3
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 4.2e-34 149.4 214 43.9
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 5.4e-34 149.1 214 45.8
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 1.2e-33 147.9 206 44.7
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 2.7e-33 146.7 193 48.7
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 3.5e-33 146.4 209 45.0
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 3.5e-33 146.4 123 64.2
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 3.5e-33 146.4 214 42.5
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 4.6e-33 146.0 212 45.3
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 7.9e-33 145.2 255 41.6
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 1.8e-32 144.1 291 36.4
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 1.9e-31 140.6 208 43.8
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 2.5e-31 140.2 236 41.1
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 3.3e-31 139.8 253 40.3
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.3e-31 139.4 256 39.8
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.3e-31 139.4 255 40.4
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 4.3e-31 139.4 254 40.2
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 5.6e-31 139.0 254 39.8
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 7.4e-31 138.7 214 42.5
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 7.4e-31 138.7 208 43.8
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 9.6e-31 138.3 209 44.0
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 9.6e-31 138.3 208 40.4
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 1.3e-30 137.9 218 41.3
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 2.8e-30 136.7 221 42.1
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 2.8e-30 136.7 210 44.3
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 6.2e-30 135.6 208 41.8
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 6.2e-30 135.6 294 38.1
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 8.1e-30 135.2 221 41.6
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 1.1e-29 134.8 201 44.3
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.4e-29 134.4 213 41.8
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 2.4e-29 133.7 272 36.8
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.1e-29 133.3 208 42.3
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 4.0e-29 132.9 208 41.8
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.2e-28 131.3 213 41.3
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 1.2e-28 131.3 256 37.1
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 1.2e-28 131.3 256 37.1
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 1.5e-28 131.0 254 39.4
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 2.6e-28 130.2 103 66.0
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 3.4e-28 129.8 192 44.8
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 1.3e-27 127.9 203 41.4
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 1.7e-27 127.5 211 41.7
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 2.2e-27 127.1 208 41.3
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 4.9e-27 125.9 253 37.2
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 8.4e-27 125.2 258 36.4
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 8.4e-27 125.2 203 41.9
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 1.4e-26 124.4 207 44.4
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 6.0e-25 119.0 224 35.7
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 7.9e-25 118.6 223 36.3
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 2.5e-23 113.6 220 37.3
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 6.2e-22 109.0 214 37.4
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 1.1e-21 108.2 270 32.6
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 6.9e-21 105.5 219 35.6
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 9.0e-21 105.1 216 38.0
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 2.8e-14 83.6 213 32.4
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 1.0e-11 75.1 139 38.1
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 1.0e-11 75.1 119 46.2
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 2.1e-09 67.4 125 40.0
HanXRQChr11g0343691 Helianthus annuus HOM05D000954 ORTHO05D016146 4.6e-09 66.2 34 94.1
HanXRQChr09g0246151 Helianthus annuus HOM05D003640 ORTHO05D016146 3.0e-08 63.5 50 68.0
arahy.Tifrunner.gnm1.ann1.JKFZ9B Arachis hypogaea HOM05D003640 ORTHO05D082470 3.3e-07 60.1 72 51.4
C02p18030 Brassica napus HOM05D003640 ORTHO05D004439 4.8e-06 56.2 90 43.3
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 6.3e-06 55.8 43 62.8


User provided reference genes

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