Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20481 Brassica carinata HOM05D006099 ORTHO05D007317 3.3e-83 311.6 154 100.0
C09p43040 Brassica napus HOM05D006099 ORTHO05D007317 3.3e-83 311.6 154 100.0
BcaC08g44050 Brassica carinata HOM05D006099 ORTHO05D007317 1.8e-81 305.8 154 98.7
BolC6t36631H Brassica oleracea HOM05D006099 ORTHO05D007317 2.0e-75 285.8 146 97.9
A08p18780 Brassica napus HOM05D006099 ORTHO05D007317 4.1e-73 278.1 143 96.5
BraA08t33839Z Brassica rapa HOM05D006099 ORTHO05D007317 4.1e-73 278.1 143 96.5
BcaB03g12683 Brassica carinata HOM05D006099 ORTHO05D007317 3.0e-68 261.9 143 91.6
C03p41630 Brassica napus HOM05D006099 ORTHO05D007317 5.2e-68 261.2 133 95.5
BolC3t21124H Brassica oleracea HOM05D006099 ORTHO05D007317 9.8e-67 256.9 144 91.0
C03p88160 Brassica napus HOM05D006099 ORTHO05D007317 1.4e-65 253.1 144 89.6
Thhalv10025966m.g Eutrema salsugineum HOM05D006099 ORTHO05D007317 3.8e-63 245.0 143 83.9
Sp7g29030 Schrenkiella parvula HOM05D006099 ORTHO05D007317 2.8e-61 238.8 143 81.8
Carub.0007s0938 Capsella rubella HOM05D006099 ORTHO05D007317 5.2e-60 234.6 143 81.8
AT4G31150 Arabidopsis thaliana HOM05D006099 ORTHO05D007317 2.0e-59 232.6 144 81.9
AL7G20920 Arabidopsis lyrata HOM05D006099 ORTHO05D007317 4.9e-58 228.0 144 80.6
Aa31LG2G19160 Aethionema arabicum HOM05D006099 ORTHO05D007317 6.3e-58 227.6 143 76.9
THA.LOC104803891 Tarenaya hassleriana HOM05D006099 ORTHO05D007317 8.9e-52 207.2 146 70.5
Atru.chr7.2710 Acer truncatum HOM05D006099 ORTHO05D007317 3.4e-43 178.7 132 63.6
Cpa.g.sc148.13 Carica papaya HOM05D006099 ORTHO05D007317 1.9e-41 172.9 130 64.6
AUR62028064 Chenopodium quinoa HOM05D006099 ORTHO05D007317 1.9e-41 172.9 140 60.0
Actinidia03572 Actinidia chinensis HOM05D006099 ORTHO05D007317 3.2e-41 172.2 142 59.2
Lj7A751T33 Lonicera japonica HOM05D006099 ORTHO05D007317 4.1e-41 171.8 140 60.7
GSVIVG01035588001 Vitis vinifera HOM05D006099 ORTHO05D007317 4.1e-41 171.8 151 57.0
Dinv37480 Davidia involucrata HOM05D006099 ORTHO05D007317 1.2e-40 170.2 144 58.3
Lalb_Chr24g0402361 Lupinus albus HOM05D006099 ORTHO05D007317 2.1e-40 169.5 140 60.7
CSS0007227 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 4.6e-40 168.3 152 57.2
CAN.G947.18 Capsicum annuum HOM05D006099 ORTHO05D007317 4.6e-40 168.3 132 62.1
Nn4g25135 Nelumbo nucifera HOM05D006099 ORTHO05D007317 4.6e-40 168.3 138 57.2
Rhsim07G0173500 Rhododendron simsii HOM05D006099 ORTHO05D007317 4.6e-40 168.3 147 57.8
AUR62020668 Chenopodium quinoa HOM05D006099 ORTHO05D007317 7.8e-40 167.5 142 59.2
DCAR_000694 Daucus carota HOM05D006099 ORTHO05D007317 7.8e-40 167.5 141 57.4
Ciclev10009104m.g Citrus clementina HOM05D006099 ORTHO05D007317 1.0e-39 167.2 143 57.3
Psat6g031520 Pisum sativum HOM05D006099 ORTHO05D007317 1.0e-39 167.2 148 57.4
Solyc12g096280.2 Solanum lycopersicum HOM05D006099 ORTHO05D007317 1.3e-39 166.8 138 60.9
CSS0009505 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 2.3e-39 166.0 152 57.2
Hund03250 Selenicereus undatus HOM05D006099 ORTHO05D007317 3.9e-39 165.2 142 57.0
CANSAT25G1623 Cannabis sativa HOM05D006099 ORTHO05D007317 5.1e-39 164.9 148 58.8
vmacro05090 Vaccinium macrocarpon HOM05D006099 ORTHO05D007317 5.1e-39 164.9 153 57.5
Cc00_g12770 Coffea canephora HOM05D006099 ORTHO05D007317 8.6e-39 164.1 142 60.6
Hma1.2p1_1615F.1_g293710 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 8.6e-39 164.1 121 64.5
Lsat_1_v5_gn_3_111601 Lactuca sativa HOM05D006099 ORTHO05D007317 1.1e-38 163.7 125 61.6
Lj5g0025000 Lotus japonicus HOM05D006099 ORTHO05D007317 1.1e-38 163.7 132 62.1
Manes.15G141200 Manihot esculenta HOM05D006099 ORTHO05D007317 1.5e-38 163.3 135 56.3
Sopen12g032140 Solanum pennellii HOM05D006099 ORTHO05D007317 1.5e-38 163.3 126 62.7
Nitab4.5_0001159g0110 Nicotiana tabacum HOM05D006099 ORTHO05D007317 3.3e-38 162.2 143 55.9
Os06g0663600 Oryza sativa ssp. japonica HOM05D006099 ORTHO05D007317 3.3e-38 162.2 144 56.2
PGSC0003DMG400029284 Solanum tuberosum HOM05D006099 ORTHO05D007317 3.3e-38 162.2 123 63.4
Ca_27927_v3 Cicer arietinum L. HOM05D006099 ORTHO05D007317 4.3e-38 161.8 134 60.4
Cfa013234 Carpinus fangiana HOM05D006099 ORTHO05D007317 5.6e-38 161.4 135 57.8
Gohir.A05G066400 Gossypium hirsutum HOM05D006099 ORTHO05D007317 7.3e-38 161.0 136 57.4
Gohir.D05G068900 Gossypium hirsutum HOM05D006099 ORTHO05D007317 7.3e-38 161.0 136 58.1
Gorai.009G069800 Gossypium raimondii HOM05D006099 ORTHO05D007317 7.3e-38 161.0 136 58.1
FAN27G0146 Fragaria x ananassa HOM05D006099 ORTHO05D007317 9.5e-38 160.6 148 54.7
Glyma.14G131200 Glycine max HOM05D006099 ORTHO05D007317 2.1e-37 159.5 140 59.3
ECA240G1547 Erigeron canadensis HOM05D006099 ORTHO05D007317 3.6e-37 158.7 127 58.3
Medtr1g010130 Medicago truncatula HOM05D006099 ORTHO05D007317 3.6e-37 158.7 134 59.7
FvH4_2g30570 Fragaria vesca HOM05D006099 ORTHO05D007317 4.7e-37 158.3 140 57.1
FAN15G2948 Fragaria x ananassa HOM05D006099 ORTHO05D007317 4.7e-37 158.3 148 53.4
arahy.Tifrunner.gnm1.ann1.AEW87R Arachis hypogaea HOM05D006099 ORTHO05D007317 8.1e-37 157.5 135 57.0
arahy.Tifrunner.gnm1.ann1.ZJIP4K Arachis hypogaea HOM05D006099 ORTHO05D007317 1.4e-36 156.8 139 56.8
MD08G1132300 Malus domestica HOM05D006099 ORTHO05D007317 2.3e-36 156.0 144 56.2
TWI32G0633 Tripterygium wilfordii HOM05D006099 ORTHO05D007317 3.1e-36 155.6 154 53.9
VMungo0647G0711 Vigna mungo HOM05D006099 ORTHO05D007317 8.9e-36 154.1 141 56.7
Duzib168G0660 Durio zibethinus HOM05D006099 ORTHO05D007317 1.5e-35 153.3 129 58.1
Manes.15G141100 Manihot esculenta HOM05D006099 ORTHO05D007317 4.4e-35 151.8 135 54.8
Phvul.001G057000 Phaseolus vulgaris HOM05D006099 ORTHO05D007317 9.9e-35 150.6 146 56.2
Sed0006978 Sechium edule HOM05D006099 ORTHO05D007317 1.7e-34 149.8 132 59.1
CiPaw.07G216100 Carya illinoinensis HOM05D006099 ORTHO05D007317 3.7e-34 148.7 124 55.6
RcHm_v2.0_Chr6g0312441 Rosa chinensis HOM05D006099 ORTHO05D007317 3.7e-34 148.7 129 57.4
HanXRQChr13g0419861 Helianthus annuus HOM05D006099 ORTHO05D007317 1.9e-33 146.4 124 57.3
Zm00001eb274410 Zea mays HOM05D006099 ORTHO05D007317 2.4e-33 146.0 131 55.7
CsaV3_2G031500 Cucumis sativus L. HOM05D006099 ORTHO05D007317 3.2e-33 145.6 138 55.1
Sc23g0004790 Simmondsia chinensis HOM05D006099 ORTHO05D007317 3.2e-33 145.6 138 52.2
PGR142G3206 Punica granatum HOM05D006099 ORTHO05D007317 4.1e-33 145.2 153 51.0
Potri.018G001000 Populus trichocarpa HOM05D006099 ORTHO05D007317 7.1e-33 144.4 156 53.2
Thecc.09G001300 Theobroma cacao HOM05D006099 ORTHO05D007317 7.1e-33 144.4 120 60.0
Zm00001eb274500 Zea mays HOM05D006099 ORTHO05D007317 7.1e-33 144.4 129 55.8
HPP92_011639 Vanilla planifolia HOM05D006099 ORTHO05D007317 1.2e-32 143.7 125 53.6
Hma1.2p1_1615F.1_g293700 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 1.6e-32 143.3 144 52.1
MBI16_g00820_MAGBIO Magnolia biondii HOM05D006099 ORTHO05D007317 2.7e-32 142.5 126 57.1
ATR0626G128 Amborella trichopoda HOM05D006099 ORTHO05D007317 6.0e-32 141.4 146 47.3
Oeu035175.2 Olea europaea HOM05D006099 ORTHO05D007317 7.8e-32 141.0 120 58.3
PSO170G3285 Papaver somniferum HOM05D006099 ORTHO05D007317 1.0e-31 140.6 162 46.9
MELO3C011207.2 Cucumis melo HOM05D006099 ORTHO05D007317 1.3e-31 140.2 145 52.4
Pp3c6_10670 Physcomitrium patens HOM05D006099 ORTHO05D007317 2.3e-31 139.4 142 49.3
Zm00001eb274550 Zea mays HOM05D006099 ORTHO05D007317 1.5e-30 136.7 120 57.5
QL12p030880 Quercus lobata HOM05D006099 ORTHO05D007317 1.9e-30 136.3 143 51.7
AagrBONN_evm.TU.Sc2ySwM_228.1579 Anthoceros agrestis HOM05D006099 ORTHO05D007317 5.6e-30 134.8 144 45.1
ClCG08G012820 Citrullus lanatus HOM05D006099 ORTHO05D007317 7.3e-30 134.4 147 49.0
QL12p030693 Quercus lobata HOM05D006099 ORTHO05D007317 7.3e-30 134.4 142 51.4
Mapoly0013s0098 Marchantia polymorpha HOM05D006099 ORTHO05D007317 1.2e-29 133.7 136 48.5
Prupe.1G463600 Prunus persica HOM05D006099 ORTHO05D007317 1.6e-29 133.3 130 53.8
Sc23g0004430 Simmondsia chinensis HOM05D006099 ORTHO05D007317 1.6e-29 133.3 147 48.3
SMO351G0465 Selaginella moellendorffii HOM05D006099 ORTHO05D007317 1.1e-28 130.6 128 43.8
Haze_21663 Corylus avellana HOM05D006099 ORTHO05D007317 1.8e-28 129.8 117 53.0
EL10Ac2g03669 Beta vulgaris HOM05D006099 ORTHO05D007317 4.0e-28 128.6 139 50.4
SalBow4G2099 Salvia bowleyana HOM05D006099 ORTHO05D007317 2.2e-26 122.9 140 49.3
Zm00001eb442290 Zea mays HOM05D006099 ORTHO05D007317 3.8e-26 122.1 91 62.6
SGA_v2.0_scaffold27G11694 Striga asiatica HOM05D006099 ORTHO05D007317 2.4e-25 119.4 132 52.3
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 5.4e-25 118.2 138 47.8
FAN20G1258 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.7e-23 113.2 165 40.6
FAN20G1767 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.7e-23 113.2 165 40.6
TAR626G0599 Trochodendron aralioides HOM05D006099 ORTHO05D007317 5.6e-22 108.2 103 49.5
Peaxi162Scf00876g00025 Petunia axillaris HOM05D006099 ORTHO05D007317 1.3e-21 107.1 132 47.7
SHI15001 Sapria himalayana HOM05D006099 ORTHO05D007317 1.3e-21 107.1 101 55.4
CBR_g34340 Chara braunii HOM05D006099 ORTHO05D007317 1.6e-21 106.7 207 33.3
TPR.G26527 Trifolium pratense HOM05D006099 ORTHO05D007317 1.6e-21 106.7 99 56.6
Eucgr.C02144 Eucalyptus grandis HOM05D006099 ORTHO05D007317 8.1e-21 104.4 135 43.7
MSTRG.11825 Avicennia marina HOM05D006099 ORTHO05D007317 1.1e-20 104.0 108 50.0
Migut.A00463 Erythranthe guttata HOM05D006099 ORTHO05D007317 1.4e-20 103.6 128 46.9
Zm00001eb274520 Zea mays HOM05D006099 ORTHO05D007317 1.2e-19 100.5 97 52.6
FAN24G0140 Fragaria x ananassa HOM05D006099 ORTHO05D007317 2.6e-19 99.4 82 58.5
unitig_32.g10950 Utricularia gibba HOM05D006099 ORTHO05D007317 1.2e-16 90.5 93 51.6
PSO063G7181 Papaver somniferum HOM05D006099 ORTHO05D007317 2.1e-16 89.7 77 54.5
Ah.11g044160 Amaranthus hybridus HOM05D006099 ORTHO05D007317 4.0e-12 75.5 133 33.8
RcHm_v2.0_Chr6g0312501 Rosa chinensis HOM05D006099 ORTHO05D007317 6.9e-12 74.7 82 48.8
MCO10G112 Micromonas commoda HOM05D006099 ORTHO05D007317 7.6e-11 71.2 138 33.3
HanXRQChr13g0419831 Helianthus annuus HOM05D006099 ORTHO05D007317 7.1e-09 64.7 48 60.4
CDE08G0278 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 9.3e-09 64.3 64 48.4
Cre07.g346100 Chlamydomonas reinhardtii HOM05D006099 ORTHO05D007317 1.0e-07 60.8 70 42.9
TPR.G3995 Trifolium pratense HOM05D006099 ORTHO05D007317 1.8e-07 60.1 35 74.3


User provided reference genes

Program Settings