Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p42890 Brassica napus HOM05D012238 ORTHO05D016114 1.6e-112 409.5 203 100.0
BolC9t57159H Brassica oleracea HOM05D012238 ORTHO05D016114 9.5e-86 320.5 156 100.0
BcaC04g20500 Brassica carinata HOM05D012238 ORTHO05D016114 7.6e-67 257.7 177 79.1
A02p40270 Brassica napus HOM05D012238 ORTHO05D016114 2.7e-32 142.9 96 81.2
BraA02t08996Z Brassica rapa HOM05D012238 ORTHO05D016114 2.7e-32 142.9 96 81.2
BolC1t02792H Brassica oleracea HOM05D012238 ORTHO05D016114 1.0e-31 141.0 96 79.2
C02p31510 Brassica napus HOM05D012238 ORTHO05D016114 2.0e-27 126.7 66 93.9
C01p28650 Brassica napus HOM05D012238 ORTHO05D016114 4.5e-27 125.6 66 92.4
C04p29370 Brassica napus HOM05D012238 ORTHO05D016114 6.5e-26 121.7 66 89.4
A03p35510 Brassica napus HOM05D012238 ORTHO05D016114 1.1e-17 94.4 74 71.6
BolC2t09437H Brassica oleracea HOM05D012238 ORTHO05D016114 4.2e-17 92.4 50 90.0
AL7G15820 Arabidopsis lyrata HOM05D001098 ORTHO05D002527 1.1e-09 67.8 95 46.3
BcaB03g12410 Brassica carinata HOM05D001098 ORTHO05D002527 1.1e-09 67.8 95 46.3
BcaNung02390 Brassica carinata HOM05D001098 ORTHO05D002527 1.1e-09 67.8 95 46.3
A01p03220 Brassica napus HOM05D001098 ORTHO05D002527 1.1e-09 67.8 95 46.3
A03p63540 Brassica napus HOM05D001098 ORTHO05D002527 1.1e-09 67.8 95 46.3
C01p03570 Brassica napus HOM05D001098 ORTHO05D002527 1.1e-09 67.8 95 46.3
C07p61120 Brassica napus HOM05D001098 ORTHO05D002527 1.1e-09 67.8 95 46.3
BolC1t00347H Brassica oleracea HOM05D001098 ORTHO05D002527 1.1e-09 67.8 95 46.3
BolC7t46536H Brassica oleracea HOM05D001098 ORTHO05D002527 1.1e-09 67.8 95 46.3
BraA01t00307Z Brassica rapa HOM05D001098 ORTHO05D002527 1.1e-09 67.8 95 46.3
BraA03t15424Z Brassica rapa HOM05D001098 ORTHO05D002527 1.1e-09 67.8 95 46.3
BcaNung06457 Brassica carinata HOM05D001098 ORTHO05D002527 1.4e-09 67.4 95 45.3
A08p21890 Brassica napus HOM05D001098 ORTHO05D002527 1.4e-09 67.4 95 45.3
BraA08t34142Z Brassica rapa HOM05D001098 ORTHO05D002527 1.4e-09 67.4 95 45.3
Carub.0007s0496 Capsella rubella HOM05D001098 ORTHO05D002527 1.4e-09 67.4 95 45.3
Thhalv10025582m.g Eutrema salsugineum HOM05D001098 ORTHO05D002527 1.4e-09 67.4 95 45.3
Aa31sc18G70 Aethionema arabicum HOM05D001098 ORTHO05D002527 3.2e-09 66.2 95 44.2
CARHR243660 Cardamine hirsuta HOM05D001098 ORTHO05D002527 3.2e-09 66.2 95 44.2
Ciclev10028748m.g Citrus clementina HOM05D001098 ORTHO05D002527 3.2e-09 66.2 94 45.7
Sp7g33130 Schrenkiella parvula HOM05D001098 ORTHO05D002527 3.2e-09 66.2 95 44.2
BcaC01g00493 Brassica carinata HOM05D001098 ORTHO05D002527 5.5e-09 65.5 94 44.7
C03p80640 Brassica napus HOM05D001098 ORTHO05D002527 5.5e-09 65.5 94 44.7
BolC3t20307H Brassica oleracea HOM05D001098 ORTHO05D002527 5.5e-09 65.5 94 44.7
Eucgr.I01538 Eucalyptus grandis HOM05D001098 ORTHO05D002527 5.5e-09 65.5 95 43.2
Duzib132G1111 Durio zibethinus HOM05D001098 ORTHO05D002527 9.4e-09 64.7 94 43.6
Duzib248G0955 Durio zibethinus HOM05D001098 ORTHO05D002527 9.4e-09 64.7 94 43.6
Lsat_1_v5_gn_8_120701 Lactuca sativa HOM05D001098 ORTHO05D002527 9.4e-09 64.7 80 46.2
Gohir.A04G111700 Gossypium hirsutum HOM05D001098 ORTHO05D002527 1.2e-08 64.3 80 45.0
Atru.chr5.3569 Acer truncatum HOM05D001098 ORTHO05D002527 1.6e-08 63.9 80 47.5
Migut.B00005 Erythranthe guttata HOM05D001098 ORTHO05D002527 1.6e-08 63.9 94 41.5
Hma1.2p1_0271F.1_g108730 Hydrangea macrophylla HOM05D001098 ORTHO05D002527 1.6e-08 63.9 86 43.0
MD05G1141000 Malus domestica HOM05D001098 ORTHO05D002527 1.6e-08 63.9 80 46.2
Prupe.8G181000 Prunus persica HOM05D001098 ORTHO05D002527 1.6e-08 63.9 80 47.5
Dinv41864 Davidia involucrata HOM05D001098 ORTHO05D002527 2.1e-08 63.5 80 46.2
ATR0057G016 Amborella trichopoda HOM05D001098 ORTHO05D002527 2.7e-08 63.2 94 43.6
CDE10G0149 Ceratophyllum demersum HOM05D001098 ORTHO05D002527 2.7e-08 63.2 95 42.1
Actinidia17990 Actinidia chinensis HOM05D001098 ORTHO05D002527 3.6e-08 62.8 80 46.2
Actinidia20579 Actinidia chinensis HOM05D001098 ORTHO05D002527 3.6e-08 62.8 80 46.2
CsaV3_6G010050 Cucumis sativus L. HOM05D001098 ORTHO05D002527 3.6e-08 62.8 81 42.0
Lj9A408T81 Lonicera japonica HOM05D001098 ORTHO05D002527 3.6e-08 62.8 80 46.2
COL.COLO4_34319 Corchorus olitorius HOM05D001098 ORTHO05D002527 4.7e-08 62.4 80 45.0
DCAR_006385 Daucus carota HOM05D001098 ORTHO05D002527 4.7e-08 62.4 80 45.0
Gohir.A13G064400 Gossypium hirsutum HOM05D001098 ORTHO05D002527 4.7e-08 62.4 80 45.0
HanXRQChr16g0515181 Helianthus annuus HOM05D001098 ORTHO05D002527 4.7e-08 62.4 80 43.8
SalBow7G2674 Salvia bowleyana HOM05D001098 ORTHO05D002527 4.7e-08 62.4 94 41.5
Thecc.02G147100 Theobroma cacao HOM05D001098 ORTHO05D002527 4.7e-08 62.4 80 45.0
TPR.G18630 Trifolium pratense HOM05D001098 ORTHO05D002527 4.7e-08 62.4 80 43.8
vmacro02343 Vaccinium macrocarpon HOM05D001098 ORTHO05D002527 4.7e-08 62.4 94 38.3
GSVIVG01023864001 Vitis vinifera HOM05D001098 ORTHO05D002527 4.7e-08 62.4 80 46.2
Zm00001eb137090 Zea mays HOM05D001098 ORTHO05D002648 4.7e-08 62.4 177 31.6
Gorai.012G138800 Gossypium raimondii HOM05D001098 ORTHO05D002527 6.1e-08 62.0 80 43.8
Hma1.2p1_0032F.1_g018710 Hydrangea macrophylla HOM05D001098 ORTHO05D002527 6.1e-08 62.0 80 45.0
MD11G1242300 Malus domestica HOM05D001098 ORTHO05D002527 6.1e-08 62.0 80 43.8
Oeu012219.1 Olea europaea HOM05D001098 ORTHO05D002527 6.1e-08 62.0 80 43.8
Oeu050440.1 Olea europaea HOM05D001098 ORTHO05D002527 6.1e-08 62.0 80 43.8
unitig_90.g27539 Utricularia gibba HOM05D001098 ORTHO05D002527 6.1e-08 62.0 127 35.4
Zm00001eb325140 Zea mays HOM05D001098 ORTHO05D002527 6.1e-08 62.0 80 45.0
ClCG02G010830 Citrullus lanatus HOM05D001098 ORTHO05D002527 7.9e-08 61.6 81 40.7
Cc09_g10880 Coffea canephora HOM05D001098 ORTHO05D002527 7.9e-08 61.6 81 45.7
MELO3C013485.2 Cucumis melo HOM05D001098 ORTHO05D002527 7.9e-08 61.6 81 40.7
MBI01_g17242_MAGBIO Magnolia biondii HOM05D001098 ORTHO05D002527 7.9e-08 61.6 80 45.0
MBI01_g32424_MAGBIO Magnolia biondii HOM05D001098 ORTHO05D002527 7.9e-08 61.6 80 45.0
PSO541G0403 Papaver somniferum HOM05D001098 ORTHO05D002527 7.9e-08 61.6 80 42.5
Rhsim05G0044700 Rhododendron simsii HOM05D001098 ORTHO05D002527 7.9e-08 61.6 94 40.4
Rhsim11G0198300 Rhododendron simsii HOM05D000001 ORTHO05D000003 7.9e-08 61.6 99 42.4
Sed0023457 Sechium edule HOM05D001098 ORTHO05D002527 7.9e-08 61.6 81 40.7
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 7.9e-08 61.6 80 45.0
Manes.18G113200 Manihot esculenta HOM05D001098 ORTHO05D002527 1.0e-07 61.2 80 45.0
PSO675G9097 Papaver somniferum HOM05D001098 ORTHO05D002527 1.0e-07 61.2 80 42.5
SalBow1G7648 Salvia bowleyana HOM05D001098 ORTHO05D002527 1.0e-07 61.2 80 43.8
Sed0023927 Sechium edule HOM05D001098 ORTHO05D002527 1.0e-07 61.2 81 39.5
TWI75G1677 Tripterygium wilfordii HOM05D001098 ORTHO05D002527 1.0e-07 61.2 80 45.0
TWI79G1444 Tripterygium wilfordii HOM05D001098 ORTHO05D002527 1.0e-07 61.2 80 45.0
Aqoxy3G04159 Aquilegia oxysepala HOM05D001098 ORTHO05D002527 1.4e-07 60.8 80 43.8
arahy.Tifrunner.gnm1.ann1.N1X7B2 Arachis hypogaea HOM05D001098 ORTHO05D002527 1.4e-07 60.8 82 40.2
CSS0007326 Camellia sinensis var. sinensis HOM05D001098 ORTHO05D002527 1.4e-07 60.8 80 43.8
CSS0035199 Camellia sinensis var. sinensis HOM05D001098 ORTHO05D002527 1.4e-07 60.8 80 43.8
Ca_06505_v3 Cicer arietinum L. HOM05D001098 ORTHO05D002527 1.4e-07 60.8 80 43.8
Glyma.02G312000 Glycine max HOM05D001098 ORTHO05D002527 1.4e-07 60.8 80 43.8
RcHm_v2.0_Chr6g0281071 Rosa chinensis HOM05D001098 ORTHO05D002527 1.4e-07 60.8 80 45.0
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 1.4e-07 60.8 96 40.6
MSTRG.16957 Avicennia marina HOM05D001098 ORTHO05D002527 1.8e-07 60.5 80 41.2
CiPaw.06G114700 Carya illinoinensis HOM05D001098 ORTHO05D002527 1.8e-07 60.5 80 42.5
FvH4_2g16930 Fragaria vesca HOM05D001098 ORTHO05D002527 1.8e-07 60.5 80 45.0
FAN15G1608 Fragaria x ananassa HOM05D001098 ORTHO05D002527 1.8e-07 60.5 80 45.0
FAN24G1038 Fragaria x ananassa HOM05D001098 ORTHO05D002527 1.8e-07 60.5 80 45.0
FAN27G2361 Fragaria x ananassa HOM05D001098 ORTHO05D002527 1.8e-07 60.5 80 45.0
Potri.016G113200 Populus trichocarpa HOM05D001098 ORTHO05D002527 1.8e-07 60.5 93 43.0
PGR142G3259 Punica granatum HOM05D001098 ORTHO05D002527 1.8e-07 60.5 94 40.4
TAR628G0214 Trochodendron aralioides HOM05D000069 ORTHO05D000060 1.8e-07 60.5 80 42.5
HPP92_015755 Vanilla planifolia HOM05D001098 ORTHO05D002527 1.8e-07 60.5 83 41.0
arahy.Tifrunner.gnm1.ann1.1X8DY6 Arachis hypogaea HOM05D001098 ORTHO05D002527 2.3e-07 60.1 80 41.2
arahy.Tifrunner.gnm1.ann1.5U49GI Arachis hypogaea HOM05D001098 ORTHO05D002527 2.3e-07 60.1 80 41.2
arahy.Tifrunner.gnm1.ann1.7NF1VE Arachis hypogaea HOM05D001098 ORTHO05D002527 2.3e-07 60.1 80 41.2
CiPaw.05G093900 Carya illinoinensis HOM05D001098 ORTHO05D002527 2.3e-07 60.1 80 42.5
ECA233G3688 Erigeron canadensis HOM05D001098 ORTHO05D002527 2.3e-07 60.1 80 42.5
Psat2g000520 Pisum sativum HOM05D001098 ORTHO05D002527 2.3e-07 60.1 80 41.2
QL06p014336 Quercus lobata HOM05D001098 ORTHO05D002527 2.3e-07 60.1 182 29.7
Glyma.14G000600 Glycine max HOM05D001098 ORTHO05D002527 3.0e-07 59.7 80 42.5
Nn6g31647 Nelumbo nucifera HOM05D001098 ORTHO05D002527 3.0e-07 59.7 80 40.0
Os07g0573700 Oryza sativa ssp. japonica HOM05D001098 ORTHO05D002527 3.0e-07 59.7 80 42.5
TAR381G1518 Trochodendron aralioides HOM05D001098 ORTHO05D002527 3.0e-07 59.7 80 42.5
VMungo0647G1862 Vigna mungo HOM05D001098 ORTHO05D002527 3.0e-07 59.7 80 41.2
CAN.G321.15 Capsicum annuum HOM05D001098 ORTHO05D002527 3.9e-07 59.3 83 42.2
LjContig00081g0022408 Lotus japonicus HOM05D001098 ORTHO05D002527 3.9e-07 59.3 79 43.0
Medtr5g099280 Medicago truncatula HOM05D001098 ORTHO05D002527 3.9e-07 59.3 80 42.5
Nitab4.5_0001003g0090 Nicotiana tabacum HOM05D001098 ORTHO05D002527 3.9e-07 59.3 83 42.2
Nitab4.5_0009631g0030 Nicotiana tabacum HOM05D001098 ORTHO05D002527 3.9e-07 59.3 83 42.2
Solyc11g008590.2 Solanum lycopersicum HOM05D001098 ORTHO05D002527 3.9e-07 59.3 83 42.2
Sopen11g004380 Solanum pennellii HOM05D001098 ORTHO05D002527 3.9e-07 59.3 83 42.2
PGSC0003DMG400016250 Solanum tuberosum HOM05D001098 ORTHO05D002527 3.9e-07 59.3 83 42.2
Ah.01g017660 Amaranthus hybridus HOM05D001098 ORTHO05D002527 5.1e-07 58.9 81 44.4
Phvul.008G292800 Phaseolus vulgaris HOM05D001098 ORTHO05D002527 5.1e-07 58.9 80 41.2
Sp6g22640 Schrenkiella parvula HOM05D001368 ORTHO05D003108 5.1e-07 58.9 51 60.8
CANSAT25G0204 Cannabis sativa HOM05D001098 ORTHO05D002527 6.7e-07 58.5 80 41.2
Haze_10071 Corylus avellana HOM05D001098 ORTHO05D002527 6.7e-07 58.5 80 41.2
Gohir.D04G152000 Gossypium hirsutum HOM05D001098 ORTHO05D002527 6.7e-07 58.5 80 41.2
Lalb_Chr10g0107701 Lupinus albus HOM05D001098 ORTHO05D002527 6.7e-07 58.5 80 41.2
Manes.02G204100 Manihot esculenta HOM05D001098 ORTHO05D002527 6.7e-07 58.5 80 43.8
Aqoxy2G01309 Aquilegia oxysepala HOM05D001098 ORTHO05D002527 8.8e-07 58.2 94 39.4
Aqoxy6G01547 Aquilegia oxysepala HOM05D001098 ORTHO05D002527 8.8e-07 58.2 94 39.4
Gorai.013G064700 Gossypium raimondii HOM05D001098 ORTHO05D002527 8.8e-07 58.2 79 43.0
Peaxi162Scf00296g01213 Petunia axillaris HOM05D001098 ORTHO05D002527 1.1e-06 57.8 83 41.0
AUR62010182 Chenopodium quinoa HOM05D001098 ORTHO05D002527 1.5e-06 57.4 81 44.4
Hund06357 Selenicereus undatus HOM05D001098 ORTHO05D002527 1.5e-06 57.4 81 44.4
AUR62013184 Chenopodium quinoa HOM05D001098 ORTHO05D002527 2.0e-06 57.0 81 43.2
Sc08g0002100 Simmondsia chinensis HOM05D001098 ORTHO05D002527 2.0e-06 57.0 81 43.2
Zm00001eb412040 Zea mays HOM05D001098 ORTHO05D002527 2.0e-06 57.0 80 40.0
QL05p062032 Quercus lobata HOM05D001098 ORTHO05D002527 5.7e-06 55.5 80 40.0
QL05p062370 Quercus lobata HOM05D001098 ORTHO05D002527 7.4e-06 55.1 80 42.5
SMO118G0063 Selaginella moellendorffii HOM05D001098 ORTHO05D002527 9.7e-06 54.7 81 37.0


User provided reference genes

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