Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p42690 Brassica napus HOM05D006023 ORTHO05D007377 6.0e-110 401.0 220 100.0
BolC9t57145H Brassica oleracea HOM05D006023 ORTHO05D007377 6.0e-110 401.0 220 100.0
A10p10460 Brassica napus HOM05D006023 ORTHO05D007377 2.4e-106 389.0 220 93.6
A02p11390 Brassica napus HOM05D006023 ORTHO05D007377 2.2e-104 382.5 220 91.4
BraA10t43129Z Brassica rapa HOM05D006023 ORTHO05D007377 2.2e-104 382.5 220 95.0
C02p18900 Brassica napus HOM05D006023 ORTHO05D007377 2.9e-104 382.1 220 90.9
BolC2t08031H Brassica oleracea HOM05D006023 ORTHO05D007377 2.9e-104 382.1 220 90.9
BraA02t06203Z Brassica rapa HOM05D006023 ORTHO05D007377 3.2e-103 378.6 220 90.5
Thhalv10014686m.g Eutrema salsugineum HOM05D006023 ORTHO05D007377 4.6e-102 374.8 220 90.0
BcaC03g14468 Brassica carinata HOM05D006023 ORTHO05D007377 6.0e-102 374.4 220 90.5
BcaB05g21996 Brassica carinata HOM05D006023 ORTHO05D007377 1.3e-101 373.2 220 89.5
AL8G27520 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 4.8e-99 364.8 220 86.8
Sp6g15140 Schrenkiella parvula HOM05D006023 ORTHO05D007377 1.1e-98 363.6 220 88.6
AT5G52980 Arabidopsis thaliana HOM05D006023 ORTHO05D007377 6.9e-98 360.9 223 90.6
Carub.0008s1318 Capsella rubella HOM05D006023 ORTHO05D007377 1.7e-96 356.3 221 85.5
AL8G27580 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 1.4e-95 353.2 220 85.5
CARHR265970 Cardamine hirsuta HOM05D006023 ORTHO05D007377 1.4e-95 353.2 220 83.6
Aa31LG3G9490 Aethionema arabicum HOM05D006023 ORTHO05D007377 2.1e-86 322.8 197 84.3
AL4G21070 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 5.8e-81 304.7 222 76.6
THA.LOC104806716 Tarenaya hassleriana HOM05D006023 ORTHO05D007377 5.5e-79 298.1 188 79.8
Peaxi162Scf00184g00013 Petunia axillaris HOM05D006023 ORTHO05D007377 9.7e-68 260.8 214 65.9
MELO3C021213.2 Cucumis melo HOM05D006023 ORTHO05D007377 3.7e-67 258.8 193 70.5
Sopen08g025290 Solanum pennellii HOM05D006023 ORTHO05D007377 3.7e-67 258.8 187 70.6
PGSC0003DMG400027709 Solanum tuberosum HOM05D006023 ORTHO05D007377 3.7e-67 258.8 211 66.4
Actinidia14795 Actinidia chinensis HOM05D006023 ORTHO05D007377 6.3e-67 258.1 193 69.9
Manes.02G087300 Manihot esculenta HOM05D006023 ORTHO05D007377 8.2e-67 257.7 215 64.7
Nitab4.5_0004555g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 8.2e-67 257.7 216 64.4
Dinv28972 Davidia involucrata HOM05D006023 ORTHO05D007377 1.1e-66 257.3 217 64.5
CsaV3_6G000520 Cucumis sativus L. HOM05D006023 ORTHO05D007377 1.4e-66 256.9 188 71.8
CSS0050040 Camellia sinensis var. sinensis HOM05D006023 ORTHO05D007377 3.1e-66 255.8 187 71.7
Prupe.5G032500 Prunus persica HOM05D006023 ORTHO05D007377 3.1e-66 255.8 216 63.4
Migut.F00744 Erythranthe guttata HOM05D006023 ORTHO05D007377 4.1e-66 255.4 223 62.3
Hma1.2p1_1379F.1_g279210 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 6.9e-66 254.6 211 63.5
Cfa012466 Carpinus fangiana HOM05D006023 ORTHO05D007377 1.2e-65 253.8 193 68.9
FAN18G1789 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.2e-65 253.8 219 61.6
SGA_v2.0_scaffold6G03147 Striga asiatica HOM05D006023 ORTHO05D007377 1.2e-65 253.8 214 63.6
COL.COLO4_16998 Corchorus olitorius HOM05D006023 ORTHO05D007377 2.0e-65 253.1 189 69.3
Cc08_g03000 Coffea canephora HOM05D006023 ORTHO05D007377 2.6e-65 252.7 210 63.3
FvH4_5g22440 Fragaria vesca HOM05D006023 ORTHO05D007377 2.6e-65 252.7 219 61.6
PGR031G2123 Punica granatum HOM05D006023 ORTHO05D007377 3.4e-65 252.3 196 67.3
Gohir.D08G176200 Gossypium hirsutum HOM05D006023 ORTHO05D007377 5.9e-65 251.5 220 61.4
Gorai.004G184000 Gossypium raimondii HOM05D006023 ORTHO05D007377 5.9e-65 251.5 220 61.4
FAN08G2226 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.3e-64 250.4 219 60.7
FAN13G0319 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.3e-64 250.4 219 60.7
FAN04G1629 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.7e-64 250.0 191 66.5
Glyma.10G212800 Glycine max HOM05D006023 ORTHO05D007377 1.7e-64 250.0 217 62.2
Glyma.20G178200 Glycine max HOM05D006023 ORTHO05D007377 2.2e-64 249.6 216 62.5
PSO782G2387 Papaver somniferum HOM05D006023 ORTHO05D007377 5.0e-64 248.4 193 66.3
Sed0006289 Sechium edule HOM05D006023 ORTHO05D007377 8.5e-64 247.7 188 70.2
Gohir.A08G155600 Gossypium hirsutum HOM05D006023 ORTHO05D007377 1.1e-63 247.3 190 65.8
arahy.Tifrunner.gnm1.ann1.NMD1RU Arachis hypogaea HOM05D006023 ORTHO05D007377 2.5e-63 246.1 214 61.2
arahy.Tifrunner.gnm1.ann1.T01SKW Arachis hypogaea HOM05D006023 ORTHO05D007377 2.5e-63 246.1 213 61.0
Gohir.A06G181300 Gossypium hirsutum HOM05D006023 ORTHO05D007377 2.5e-63 246.1 220 60.5
Nitab4.5_0002808g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 2.5e-63 246.1 189 67.7
Lalb_Chr17g0341511 Lupinus albus HOM05D006023 ORTHO05D007377 3.2e-63 245.7 213 62.9
TWI81G0073 Tripterygium wilfordii HOM05D006023 ORTHO05D007377 3.2e-63 245.7 210 63.3
CiPaw.12G065700 Carya illinoinensis HOM05D006023 ORTHO05D007377 4.2e-63 245.4 193 67.4
Nn5g27684 Nelumbo nucifera HOM05D006023 ORTHO05D007377 4.2e-63 245.4 187 67.4
Sopen10g027320 Solanum pennellii HOM05D006023 ORTHO05D007377 5.5e-63 245.0 214 61.7
TPR.G1759 Trifolium pratense HOM05D006023 ORTHO05D007377 5.5e-63 245.0 192 65.1
Potri.003G093800 Populus trichocarpa HOM05D006023 ORTHO05D007377 7.2e-63 244.6 212 63.2
CANSAT21G1027 Cannabis sativa HOM05D006023 ORTHO05D007377 9.4e-63 244.2 197 63.5
arahy.Tifrunner.gnm1.ann1.7BP5M1 Arachis hypogaea HOM05D006023 ORTHO05D007377 1.2e-62 243.8 213 60.6
RcHm_v2.0_Chr7g0210231 Rosa chinensis HOM05D006023 ORTHO05D007377 2.1e-62 243.0 199 64.8
Thecc.08G177100 Theobroma cacao HOM05D006023 ORTHO05D007377 2.1e-62 243.0 209 63.2
Phvul.007G092700 Phaseolus vulgaris HOM05D006023 ORTHO05D007377 2.7e-62 242.7 218 61.9
Actinidia09185 Actinidia chinensis HOM05D006023 ORTHO05D007377 4.6e-62 241.9 188 68.6
Oeu006244.1 Olea europaea HOM05D006023 ORTHO05D007377 4.6e-62 241.9 213 61.0
GSVIVG01013134001 Vitis vinifera HOM05D006023 ORTHO05D007377 6.1e-62 241.5 220 60.0
Gorai.010G220500 Gossypium raimondii HOM05D006023 ORTHO05D007377 1.0e-61 240.7 180 66.1
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 1.0e-61 240.7 185 67.0
Gohir.D06G188100 Gossypium hirsutum HOM05D006023 ORTHO05D007377 1.4e-61 240.4 180 66.7
Hund11133 Selenicereus undatus HOM05D006023 ORTHO05D007377 1.4e-61 240.4 179 69.3
Lj2A236G57 Lonicera japonica HOM05D006023 ORTHO05D007377 2.3e-61 239.6 194 63.4
Aqoxy4G02643 Aquilegia oxysepala HOM05D006023 ORTHO05D007377 3.0e-61 239.2 196 61.7
Lj5g0000896 Lotus japonicus HOM05D006023 ORTHO05D007377 3.0e-61 239.2 182 68.1
TAR375G0242 Trochodendron aralioides HOM05D006023 ORTHO05D007377 3.0e-61 239.2 221 60.6
Atru.chr6.1650 Acer truncatum HOM05D006023 ORTHO05D007377 3.9e-61 238.8 192 65.6
Ca_10583_v3 Cicer arietinum L. HOM05D006023 ORTHO05D007377 5.1e-61 238.4 182 65.9
Eucgr.D02210 Eucalyptus grandis HOM05D006023 ORTHO05D007377 6.7e-61 238.0 182 68.1
Cpa.g.c32853 Carica papaya HOM05D006023 ORTHO05D007377 8.8e-61 237.7 196 64.3
RcHm_v2.0_Chr7g0210201 Rosa chinensis HOM05D006023 ORTHO05D007377 8.8e-61 237.7 187 66.3
Medtr1g095620 Medicago truncatula HOM05D006023 ORTHO05D007377 1.1e-60 237.3 211 61.1
Sc01g0007360 Simmondsia chinensis HOM05D006023 ORTHO05D007377 1.1e-60 237.3 198 64.6
Hma1.2p1_0303F.1_g118960 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 1.3e-59 233.8 196 62.8
PSO675G2981 Papaver somniferum HOM05D006023 ORTHO05D007377 1.3e-59 233.8 182 64.8
SGA_v2.0_scaffold196G40921 Striga asiatica HOM05D006023 ORTHO05D007377 4.8e-59 231.9 205 61.5
Ah.07g200580 Amaranthus hybridus HOM05D006023 ORTHO05D007377 1.8e-58 229.9 190 63.2
Lsat_1_v5_gn_6_80341 Lactuca sativa HOM05D006023 ORTHO05D007377 4.1e-58 228.8 188 62.8
ECA240G0359 Erigeron canadensis HOM05D006023 ORTHO05D007377 5.3e-58 228.4 191 61.8
Rhsim07G0128700 Rhododendron simsii HOM05D006023 ORTHO05D007377 7.7e-57 224.6 253 53.8
EL10Ac5g12082 Beta vulgaris HOM05D006023 ORTHO05D007377 2.2e-56 223.0 213 59.2
MD06G1036800 Malus domestica HOM05D006023 ORTHO05D007377 8.5e-56 221.1 215 57.7
DCAR_004289 Daucus carota HOM05D006023 ORTHO05D007377 1.1e-55 220.7 186 62.4
unitig_21.g20896 Utricularia gibba HOM05D006023 ORTHO05D007377 1.4e-55 220.3 184 60.9
MBI04_g41609_MAGBIO Magnolia biondii HOM05D006023 ORTHO05D007377 9.4e-55 217.6 196 59.2
HPP92_020908 Vanilla planifolia HOM05D006023 ORTHO05D007377 2.7e-54 216.1 205 55.1
Hma1.2p1_0574F.1_g181560 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 3.6e-54 215.7 155 68.4
Hma1.2p1_1379F.1_g279205 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 3.6e-54 215.7 155 68.4
PSO541G2859 Papaver somniferum HOM05D006023 ORTHO05D007377 7.9e-54 214.5 171 63.2
Psat6g182880 Pisum sativum HOM05D006023 ORTHO05D007377 1.7e-51 206.8 138 74.6
ATR0665G562 Amborella trichopoda HOM05D006023 ORTHO05D007377 5.3e-50 201.8 184 58.2
Ciclev10022247m.g Citrus clementina HOM05D006023 ORTHO05D007377 5.3e-50 201.8 160 66.2
HanXRQChr13g0414191 Helianthus annuus HOM05D006023 ORTHO05D007377 1.1e-47 194.1 157 62.4
CAN.G298.27 Capsicum annuum HOM05D006023 ORTHO05D007377 1.2e-44 184.1 148 68.2
Zm00001eb024850 Zea mays HOM05D006023 ORTHO05D007377 1.3e-43 180.6 157 59.9
vmacro14181 Vaccinium macrocarpon HOM05D006023 ORTHO05D007377 6.3e-43 178.3 373 35.1
CDE06G2650 Ceratophyllum demersum HOM05D006023 ORTHO05D007377 3.1e-42 176.0 185 53.5
Solyc08g076770.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 3.1e-42 176.0 131 67.9
PGSC0003DMG400017522 Solanum tuberosum HOM05D006023 ORTHO05D007377 5.9e-41 171.8 135 65.2
BcaNung06895 Brassica carinata HOM05D006023 ORTHO05D007377 2.7e-38 162.9 89 89.9
Mapoly0102s0011 Marchantia polymorpha HOM05D006023 ORTHO05D007377 2.2e-35 153.3 187 45.5
AUR62018698 Chenopodium quinoa HOM05D006023 ORTHO05D007377 4.1e-34 149.1 101 78.2
MSTRG.15799 Avicennia marina HOM05D006023 ORTHO05D007377 1.2e-33 147.5 126 65.9
Pp3c18_16040 Physcomitrium patens HOM05D006023 ORTHO05D007377 2.0e-33 146.7 188 42.6
PSO063G6826 Papaver somniferum HOM05D006023 ORTHO05D007377 2.7e-33 146.4 124 62.9
FAN18G1032 Fragaria x ananassa HOM05D006023 ORTHO05D007377 4.5e-33 145.6 136 57.4
ClCG06G003760 Citrullus lanatus HOM05D006023 ORTHO05D007377 3.6e-30 136.0 109 66.1
Duzib068G1405 Durio zibethinus HOM05D006023 ORTHO05D007377 1.0e-29 134.4 140 56.4
CBR_g88177 Chara braunii HOM05D006023 ORTHO05D007377 2.6e-28 129.8 121 55.4
SMO143G0066 Selaginella moellendorffii HOM05D006023 ORTHO05D007377 3.8e-24 115.9 194 34.5
Dinv25231 Davidia involucrata HOM05D006023 ORTHO05D007377 3.3e-23 112.8 76 76.3
AagrBONN_evm.TU.Sc2ySwM_228.1949 Anthoceros agrestis HOM05D006023 ORTHO05D007377 4.3e-23 112.5 139 49.6
SEGI_27853 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 5.7e-20 102.1 127 48.8
Solyc08g076740.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 1.0e-16 91.3 58 77.6
FAN18G2414 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.5e-15 87.4 85 56.5
AUR62007305 Chenopodium quinoa HOM05D006023 ORTHO05D007377 4.7e-14 82.4 53 77.4
Cre10.g438750 Chlamydomonas reinhardtii HOM05D006023 ORTHO05D007377 4.0e-13 79.3 186 29.6
MD16G1272600 Malus domestica HOM05D006023 ORTHO05D007377 2.6e-12 76.6 59 61.0
Solyc10g074822.1 Solanum lycopersicum HOM05D006023 ORTHO05D007377 7.5e-12 75.1 47 76.6
SEGI_36898 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 4.1e-10 69.3 55 60.0
Os02g0225300 Oryza sativa ssp. japonica HOM05D006023 ORTHO05D007377 1.1e-07 61.2 60 51.7


User provided reference genes

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