Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 0.0e+00 2251.9 1176 100.0
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 0.0e+00 2251.9 1176 100.0
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 0.0e+00 2243.0 1176 99.7
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 0.0e+00 2209.9 1176 98.4
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 0.0e+00 2202.6 1176 98.0
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 0.0e+00 2090.8 1176 92.2
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 0.0e+00 1872.8 1181 83.4
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 0.0e+00 1870.5 1182 84.1
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 0.0e+00 1831.2 1184 81.9
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 0.0e+00 1827.4 1181 81.7
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 0.0e+00 1808.5 1192 80.5
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 0.0e+00 1791.2 1175 80.2
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 0.0e+00 1673.7 1187 75.4
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 0.0e+00 1441.0 1176 67.5
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 0.0e+00 1115.9 1213 53.4
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 0.0e+00 1098.2 1189 53.4
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 0.0e+00 1089.3 1132 54.6
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 0.0e+00 1082.8 1246 51.6
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 0.0e+00 1076.6 1286 50.4
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 4.0e-311 1071.6 1098 55.8
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 3.9e-309 1065.1 1224 51.8
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 3.3e-308 1062.0 1274 50.5
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 2.8e-307 1058.9 1109 54.4
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 1.6e-305 1053.1 1229 51.4
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 1.8e-301 1039.6 1106 54.2
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 1.7e-299 1033.1 1264 49.8
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 1.4e-298 1030.0 1266 48.0
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 1.8e-298 1029.6 1227 49.5
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 5.3e-298 1028.1 1270 48.9
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 1.2e-297 1026.9 1277 48.2
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 5.0e-296 1021.5 1104 53.0
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 1.1e-295 1020.4 1220 49.6
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 1.5e-295 1020.0 1137 51.5
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 1.2e-294 1016.9 1279 48.2
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 4.0e-293 1011.9 1229 50.0
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 8.8e-293 1010.7 1257 49.2
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 1.2e-292 1010.4 1167 50.2
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 1.5e-292 1010.0 1295 47.9
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 2.0e-292 1009.6 1285 48.9
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 3.4e-292 1008.8 1138 52.2
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 1.8e-290 1003.0 1234 50.8
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 3.8e-288 995.3 1294 47.1
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 2.1e-286 989.6 1179 49.7
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 3.6e-286 988.8 1264 48.8
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 1.5e-284 983.4 1222 48.2
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 2.6e-284 982.6 1132 51.0
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 5.7e-284 981.5 1270 48.6
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 9.8e-284 980.7 1321 46.9
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 9.8e-284 980.7 1267 47.0
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 1.8e-282 976.5 957 56.4
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 4.5e-281 971.8 1143 49.0
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 5.9e-281 971.5 1253 46.8
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 1.0e-280 970.7 1007 54.9
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.2e-278 963.8 1273 47.6
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.2e-278 963.8 1273 47.9
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 1.8e-277 959.9 1253 47.6
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 2.2e-275 953.0 1285 45.4
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 8.3e-275 951.0 1238 47.3
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 3.2e-274 949.1 1284 46.1
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 4.6e-273 945.3 1273 45.2
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 3.3e-271 939.1 1258 46.1
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 1.2e-270 937.2 1251 46.8
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 1.4e-266 923.7 1280 46.2
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 2.7e-265 919.5 930 55.5
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 4.6e-265 918.7 1234 46.9
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 4.6e-265 918.7 1166 49.0
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 7.8e-265 917.9 1227 47.8
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 1.7e-264 916.8 1341 43.9
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 2.5e-263 912.9 1190 46.5
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 9.5e-263 911.0 1239 47.4
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 9.5e-263 911.0 1181 47.3
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 9.5e-263 911.0 1098 50.3
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 2.8e-262 909.4 1228 47.0
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 4.7e-262 908.7 1224 47.5
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 5.4e-258 895.2 1336 43.2
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 2.1e-257 893.3 1135 47.1
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 3.3e-255 885.9 1308 43.5
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 1.4e-253 880.6 1250 45.5
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 8.9e-253 877.9 1221 45.8
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 1.2e-252 877.5 912 54.6
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 1.5e-252 877.1 1317 43.2
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 1.4e-250 870.5 1103 48.5
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 4.1e-250 869.0 1307 44.4
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 2.5e-247 859.8 1318 42.8
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 1.9e-242 843.6 1131 47.8
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 8.1e-238 828.2 1231 43.3
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 1.4e-234 817.4 988 48.5
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 1.6e-233 813.9 1143 45.1
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 1.6e-225 787.3 1317 39.8
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 4.6e-225 785.8 1431 39.8
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 3.1e-221 773.1 1143 43.0
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 4.0e-221 772.7 1148 43.6
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 2.0e-220 770.4 1104 44.0
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 3.8e-219 766.1 1209 42.3
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 2.4e-213 746.9 1228 41.6
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 3.1e-213 746.5 1252 40.3
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 2.0e-212 743.8 1122 44.2
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 4.2e-202 709.5 1167 40.3
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 4.2e-194 682.9 958 45.6
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 1.1e-191 674.9 1155 39.7
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 2.8e-190 670.2 553 62.9
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 1.2e-185 654.8 968 41.8
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 7.7e-180 635.6 1216 38.3
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 4.7e-177 626.3 516 64.0
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 4.0e-160 570.1 1216 34.7
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 5.8e-159 566.2 527 56.9
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 2.9e-158 563.9 964 38.2
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 4.7e-137 493.4 1256 31.8
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 6.4e-126 456.4 629 43.6
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 8.4e-102 376.3 1067 29.0
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 5.7e-82 310.5 499 41.1
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 2.4e-72 278.5 247 63.2
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 5.3e-64 250.8 302 51.0
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 3.0e-51 208.4 168 61.3
RcHm_v2.0_Chr5g0072581 Rosa chinensis HOM05D005400 ORTHO05D006668 6.8e-51 207.2 173 59.5
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 6.3e-49 200.7 237 45.6
Lj3C915T0 Lonicera japonica HOM05D005400 ORTHO05D006668 7.5e-42 177.2 137 67.2
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 2.0e-39 169.1 625 27.5
CDE04G2330 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 4.6e-31 141.4 106 62.3
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 3.3e-29 135.2 119 58.8
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 4.7e-28 131.3 103 67.0
SHI13743 Sapria himalayana HOM05D005400 ORTHO05D006668 3.4e-26 125.2 84 67.9
arahy.Tifrunner.gnm1.ann1.3F6PU2 Arachis hypogaea HOM05D005400 ORTHO05D006668 8.3e-25 120.6 105 59.0
Cre06.g284850 Chlamydomonas reinhardtii HOM05D005400 ORTHO05D006668 1.0e-22 113.6 227 36.1
Lsat_1_v5_gn_8_88601 Lactuca sativa HOM05D005400 ORTHO05D006668 1.2e-20 106.7 121 47.1
FAN06G3414 Fragaria x ananassa HOM05D005400 ORTHO05D006668 8.1e-20 104.0 120 52.5
FAN06G1858 Fragaria x ananassa HOM05D005400 ORTHO05D006668 5.2e-19 101.3 125 51.2
QL09p011903 Quercus lobata HOM05D005400 ORTHO05D006668 5.2e-19 101.3 134 46.3
GSVIVG01028761001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.9e-16 92.8 419 27.7
Glyma.14G176200 Glycine max HOM05D005400 ORTHO05D006668 1.6e-15 89.7 132 42.4
arahy.Tifrunner.gnm1.ann1.58WBAP Arachis hypogaea HOM05D005400 ORTHO05D006668 6.0e-15 87.8 116 43.1
SHI13741 Sapria himalayana HOM05D005400 ORTHO05D006668 1.4e-11 76.6 90 44.4
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 1.8e-11 76.3 72 54.2
FAN08G2853 Fragaria x ananassa HOM05D010729 ORTHO05D011897 9.0e-11 73.9 105 42.9
Dinv07570 Davidia involucrata HOM05D000001 ORTHO05D000003 1.1e-08 67.0 128 42.2
SMO171G0132 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 7.1e-08 64.3 93 37.6
FvH4_7g30961 Fragaria vesca HOM05D005400 ORTHO05D011897 1.3e-06 60.1 63 46.0


User provided reference genes

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