Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p42630 Brassica napus HOM05D002932 ORTHO05D003208 2.3e-128 462.2 232 100.0
BolC9t57139H Brassica oleracea HOM05D002932 ORTHO05D003208 2.3e-128 462.2 232 100.0
A10p10380 Brassica napus HOM05D002932 ORTHO05D003208 9.1e-125 450.3 232 97.4
BraA10t43121Z Brassica rapa HOM05D002932 ORTHO05D003208 9.1e-125 450.3 232 97.4
BcaC04g20524 Brassica carinata HOM05D002932 ORTHO05D003208 1.7e-123 446.0 232 97.8
BcaB08g35654 Brassica carinata HOM05D002932 ORTHO05D003208 2.1e-113 412.5 239 88.7
Sp6g15070 Schrenkiella parvula HOM05D002932 ORTHO05D003208 2.7e-108 395.6 232 86.6
A03p15470 Brassica napus HOM05D002932 ORTHO05D003208 1.5e-103 379.8 233 82.8
BraA03t10842Z Brassica rapa HOM05D002932 ORTHO05D003208 1.5e-103 379.8 233 82.8
C03p18060 Brassica napus HOM05D002932 ORTHO05D003208 4.8e-102 374.8 233 82.4
BolC3t14211H Brassica oleracea HOM05D002932 ORTHO05D003208 4.8e-102 374.8 233 82.4
BcaC01g06213 Brassica carinata HOM05D002932 ORTHO05D003208 4.1e-101 371.7 230 82.6
BcaB01g04222 Brassica carinata HOM05D002932 ORTHO05D003208 5.9e-100 367.9 230 82.2
Thhalv10014576m.g Eutrema salsugineum HOM05D002932 ORTHO05D003208 1.0e-99 367.1 229 83.0
BolC2t08047H Brassica oleracea HOM05D002932 ORTHO05D003208 1.7e-99 366.3 235 82.1
A02p11520 Brassica napus HOM05D002932 ORTHO05D003208 4.2e-98 361.7 235 81.3
BcaC03g14485 Brassica carinata HOM05D002932 ORTHO05D003208 1.6e-97 359.8 226 83.6
BraA02t06216Z Brassica rapa HOM05D002932 ORTHO05D003208 1.6e-97 359.8 223 83.9
C02p19170 Brassica napus HOM05D002932 ORTHO05D003208 2.8e-97 359.0 225 83.6
AT5G52900 Arabidopsis thaliana HOM05D002932 ORTHO05D003208 1.0e-96 357.1 233 79.8
BcaB05g21990 Brassica carinata HOM05D002932 ORTHO05D003208 1.0e-96 357.1 233 82.8
CARHR265860 Cardamine hirsuta HOM05D002932 ORTHO05D003208 2.4e-93 345.9 238 78.2
AL8G27370 Arabidopsis lyrata HOM05D002932 ORTHO05D003208 3.3e-90 335.5 234 77.4
Carub.0008s1309 Capsella rubella HOM05D002932 ORTHO05D003208 2.3e-75 286.2 238 69.7
Aa31LG3G9150 Aethionema arabicum HOM05D002932 ORTHO05D003208 3.5e-52 209.1 250 55.2
THA.LOC104825123 Tarenaya hassleriana HOM05D002932 ORTHO05D003208 3.9e-51 205.7 239 53.6
THA.LOC104811937 Tarenaya hassleriana HOM05D002932 ORTHO05D003208 5.6e-50 201.8 245 52.7
Sabra12G0024300 Salix brachista HOM05D002932 ORTHO05D003208 3.0e-35 152.9 235 43.8
RcHm_v2.0_Chr1g0379591 Rosa chinensis HOM05D002932 ORTHO05D003208 1.9e-34 150.2 253 44.3
QL09p012032 Quercus lobata HOM05D002932 ORTHO05D003208 4.3e-34 149.1 236 42.4
FvH4_7g30650 Fragaria vesca HOM05D002932 ORTHO05D003208 1.3e-33 147.5 252 44.4
FAN06G0995 Fragaria x ananassa HOM05D002932 ORTHO05D003208 1.3e-33 147.5 252 44.4
Duzib205G0983 Durio zibethinus HOM05D002932 ORTHO05D003208 2.1e-33 146.7 222 44.1
Cpa.g.sc3.12 Carica papaya HOM05D002932 ORTHO05D003208 2.8e-33 146.4 232 43.1
TWI23G0695 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 3.7e-33 146.0 227 42.7
COL.COLO4_30256 Corchorus olitorius HOM05D002932 ORTHO05D003208 8.2e-33 144.8 229 44.1
FAN10G0880 Fragaria x ananassa HOM05D002932 ORTHO05D003208 8.2e-33 144.8 252 43.7
FAN10G1573 Fragaria x ananassa HOM05D002932 ORTHO05D003208 8.2e-33 144.8 252 43.7
MD07G1282200 Malus domestica HOM05D002932 ORTHO05D003208 1.1e-32 144.4 232 43.1
Potri.012G035200 Populus trichocarpa HOM05D002932 ORTHO05D003208 1.1e-32 144.4 227 42.7
Potri.015G026600 Populus trichocarpa HOM05D002932 ORTHO05D003208 1.1e-32 144.4 229 45.9
Duzib084G0326 Durio zibethinus HOM05D002932 ORTHO05D003208 4.0e-32 142.5 225 44.9
TWI14G1190 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 5.3e-32 142.1 224 43.3
Prupe.2G304400 Prunus persica HOM05D002932 ORTHO05D003208 6.9e-32 141.7 247 42.5
Cfa016327 Carpinus fangiana HOM05D002932 ORTHO05D003208 1.2e-31 141.0 240 43.3
ClCG05G008540 Citrullus lanatus HOM05D002932 ORTHO05D003208 1.5e-31 140.6 238 45.8
FAN03G0587 Fragaria x ananassa HOM05D002932 ORTHO05D003208 1.5e-31 140.6 254 43.7
Thecc.03G188500 Theobroma cacao HOM05D002932 ORTHO05D003208 2.0e-31 140.2 228 43.0
Manes.06G154700 Manihot esculenta HOM05D002932 ORTHO05D003208 4.5e-31 139.0 225 43.1
MELO3C006960.2 Cucumis melo HOM05D002932 ORTHO05D003208 1.0e-30 137.9 229 46.3
Haze_00079 Corylus avellana HOM05D002932 ORTHO05D003208 1.7e-30 137.1 240 42.9
CsaV3_3G021720 Cucumis sativus L. HOM05D002932 ORTHO05D003208 2.2e-30 136.7 229 45.0
Gohir.A12G254433 Gossypium hirsutum HOM05D002932 ORTHO05D003208 2.2e-30 136.7 223 44.8
MD01G1211600 Malus domestica HOM05D002932 ORTHO05D003208 2.2e-30 136.7 241 41.5
Actinidia03151 Actinidia chinensis HOM05D002932 ORTHO05D003208 2.9e-30 136.3 229 41.9
Sed0015119 Sechium edule HOM05D002932 ORTHO05D003208 2.9e-30 136.3 228 45.2
Dinv35290 Davidia involucrata HOM05D002932 ORTHO05D003208 3.8e-30 136.0 222 41.4
Duzib068G0647 Durio zibethinus HOM05D002932 ORTHO05D003208 3.8e-30 136.0 222 43.7
Phvul.007G077100 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 4.9e-30 135.6 229 43.2
Dinv28362 Davidia involucrata HOM05D002932 ORTHO05D003208 6.5e-30 135.2 223 43.9
Sabra15G0019600 Salix brachista HOM05D002932 ORTHO05D003208 1.4e-29 134.0 229 43.7
PGR042G1004 Punica granatum HOM05D002932 ORTHO05D003208 1.9e-29 133.7 233 42.9
Sabra15G0022400 Salix brachista HOM05D002932 ORTHO05D003208 2.5e-29 133.3 237 43.0
GSVIVG01028788001 Vitis vinifera HOM05D003816 ORTHO05D004410 2.5e-29 133.3 232 43.1
FAN01G1179 Fragaria x ananassa HOM05D002932 ORTHO05D003208 3.2e-29 132.9 245 43.3
FAN06G4297 Fragaria x ananassa HOM05D002932 ORTHO05D003208 3.2e-29 132.9 245 43.3
TPR.G7742 Trifolium pratense HOM05D002932 ORTHO05D003208 3.2e-29 132.9 224 43.3
VMungo0720G0620 Vigna mungo HOM05D002932 ORTHO05D003208 3.2e-29 132.9 229 42.4
Glyma.09G126400 Glycine max HOM05D002932 ORTHO05D003208 4.2e-29 132.5 225 43.6
Gohir.D12G255000 Gossypium hirsutum HOM05D002932 ORTHO05D003208 4.2e-29 132.5 227 43.2
Gorai.008G272600 Gossypium raimondii HOM05D002932 ORTHO05D003208 4.2e-29 132.5 227 43.2
Medtr1g099440 Medicago truncatula HOM05D002932 ORTHO05D003208 4.2e-29 132.5 222 41.4
Sed0008251 Sechium edule HOM05D002932 ORTHO05D003208 4.2e-29 132.5 227 45.4
CANSAT21G2430 Cannabis sativa HOM05D002932 ORTHO05D003208 9.3e-29 131.3 244 39.8
Hma1.2p1_0142F.1_g064300 Hydrangea macrophylla HOM05D002932 ORTHO05D003208 1.2e-28 131.0 236 42.4
Lj2g0001659 Lotus japonicus HOM05D002932 ORTHO05D003208 1.2e-28 131.0 233 42.1
Manes.14G020200 Manihot esculenta HOM05D002932 ORTHO05D003208 1.2e-28 131.0 225 40.4
Lalb_Chr03g0035141 Lupinus albus HOM05D002932 ORTHO05D003208 1.6e-28 130.6 223 40.8
vmacro06597 Vaccinium macrocarpon HOM05D002932 ORTHO05D003208 1.6e-28 130.6 226 39.4
Rhsim03G0196300 Rhododendron simsii HOM05D002932 ORTHO05D003208 2.1e-28 130.2 229 41.5
Glyma.10G229200 Glycine max HOM05D002932 ORTHO05D003208 4.6e-28 129.0 231 42.4
Lalb_Chr01g0009541 Lupinus albus HOM05D002932 ORTHO05D003208 6.0e-28 128.6 225 40.0
Phvul.004G102700 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 7.9e-28 128.3 231 41.1
arahy.Tifrunner.gnm1.ann1.N7QM32 Arachis hypogaea HOM05D002932 ORTHO05D003208 1.0e-27 127.9 251 37.5
Glyma.20G164000 Glycine max HOM05D002932 ORTHO05D003208 1.0e-27 127.9 228 41.2
arahy.Tifrunner.gnm1.ann1.M5AIDB Arachis hypogaea HOM05D002932 ORTHO05D003208 1.3e-27 127.5 250 37.6
Glyma.16G173400 Glycine max HOM05D002932 ORTHO05D003208 2.3e-27 126.7 225 42.7
VMungo0464G0277 Vigna mungo HOM05D002932 ORTHO05D003208 2.3e-27 126.7 223 41.3
Psat0s694g0080 Pisum sativum HOM05D002932 ORTHO05D003208 3.0e-27 126.3 237 40.9
Psat1g099320 Pisum sativum HOM05D002932 ORTHO05D003208 3.9e-27 125.9 221 39.8
Atru.chr1.321 Acer truncatum HOM05D002932 ORTHO05D003208 3.3e-26 122.9 242 38.4
Psat1g099240 Pisum sativum HOM05D002932 ORTHO05D003208 3.3e-26 122.9 234 40.6
CSS0021611 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 4.3e-26 122.5 221 40.3
TPR.G36623 Trifolium pratense HOM05D002932 ORTHO05D003208 4.3e-26 122.5 239 38.9
Rhsim09G0202600 Rhododendron simsii HOM05D002932 ORTHO05D003208 5.7e-26 122.1 222 39.2
Actinidia08604 Actinidia chinensis HOM05D002932 ORTHO05D003208 7.4e-26 121.7 232 39.2
Psat1g106560 Pisum sativum HOM05D002932 ORTHO05D003208 7.4e-26 121.7 241 38.6
Lj5g0016966 Lotus japonicus HOM05D002932 ORTHO05D003208 9.7e-26 121.3 222 43.2
CiPaw.06G005800 Carya illinoinensis HOM05D002932 ORTHO05D003208 1.6e-25 120.6 238 39.9
Ciclev10005884m.g Citrus clementina HOM05D002932 ORTHO05D003208 2.2e-25 120.2 211 42.7
Eucgr.K00306 Eucalyptus grandis HOM05D002932 ORTHO05D003208 2.2e-25 120.2 226 43.8
Psat1g099360 Pisum sativum HOM05D002932 ORTHO05D003208 2.2e-25 120.2 234 39.7
Medtr6g034055 Medicago truncatula HOM05D002932 ORTHO05D003208 1.4e-24 117.5 229 39.3
Medtr6g034060 Medicago truncatula HOM05D002932 ORTHO05D003208 4.1e-24 115.9 237 39.7
Lalb_Chr21g0305311 Lupinus albus HOM05D002932 ORTHO05D003208 5.3e-24 115.5 223 39.0
ClCG01G000790 Citrullus lanatus HOM05D002932 ORTHO05D003208 1.2e-23 114.4 228 36.0
TPR.G36701 Trifolium pratense HOM05D002932 ORTHO05D003208 1.2e-23 114.4 244 37.7
Lalb_Chr02g0141341 Lupinus albus HOM05D002932 ORTHO05D003208 1.5e-23 114.0 237 39.2
Eucgr.A02685 Eucalyptus grandis HOM05D002932 ORTHO05D003208 2.0e-23 113.6 234 39.7
SalBow4G2867 Salvia bowleyana HOM05D002932 ORTHO05D003208 2.0e-23 113.6 235 38.7
Migut.F00261 Erythranthe guttata HOM05D002932 ORTHO05D003208 3.4e-23 112.8 255 36.9
Nn1g01736 Nelumbo nucifera HOM05D002932 ORTHO05D003208 4.5e-23 112.5 225 41.3
Gohir.A11G013400 Gossypium hirsutum HOM05D002932 ORTHO05D003208 7.6e-23 111.7 234 34.6
Ah.07g206300 Amaranthus hybridus HOM05D002932 ORTHO05D003208 1.3e-22 110.9 223 38.1
Gohir.D11G013600 Gossypium hirsutum HOM05D002932 ORTHO05D003208 1.3e-22 110.9 235 33.6
Oeu009283.1 Olea europaea HOM05D002932 ORTHO05D003208 1.3e-22 110.9 232 38.8
Solyc03g007775.2 Solanum lycopersicum HOM05D002932 ORTHO05D003208 1.3e-22 110.9 237 36.3
Oeu037130.1 Olea europaea HOM05D002932 ORTHO05D003208 1.7e-22 110.5 230 39.1
Sed0018025 Sechium edule HOM05D002932 ORTHO05D003208 3.8e-22 109.4 226 37.2
MELO3C005851.2 Cucumis melo HOM05D002932 ORTHO05D003208 6.5e-22 108.6 233 35.6
CsaV3_5G000930 Cucumis sativus L. HOM05D002932 ORTHO05D003208 8.5e-22 108.2 232 37.9
Sopen03g003700 Solanum pennellii HOM05D002932 ORTHO05D003208 1.9e-21 107.1 238 35.3
Ah.13g069610 Amaranthus hybridus HOM05D002932 ORTHO05D003208 4.2e-21 105.9 226 37.6
TAR629G3108 Trochodendron aralioides HOM05D002932 ORTHO05D003208 7.2e-21 105.1 217 35.0
Nn7g37319 Nelumbo nucifera HOM05D002932 ORTHO05D003208 3.6e-20 102.8 217 41.5
CAN.G926.8 Capsicum annuum HOM05D002932 ORTHO05D003208 4.6e-20 102.4 238 33.6
ECA238G1001 Erigeron canadensis HOM05D002932 ORTHO05D003208 7.9e-20 101.7 226 37.2
PGSC0003DMG400019964 Solanum tuberosum HOM05D002932 ORTHO05D003208 7.9e-20 101.7 235 34.5
EL10Ac3g05377 Beta vulgaris HOM05D002932 ORTHO05D003208 1.4e-19 100.9 242 36.8
HanXRQChr13g0392281 Helianthus annuus HOM05D002932 ORTHO05D003208 2.3e-19 100.1 236 36.9
HanXRQChr14g0462641 Helianthus annuus HOM05D002932 ORTHO05D003208 5.1e-19 99.0 217 35.9
Sc19g0001040 Simmondsia chinensis HOM05D002932 ORTHO05D003208 5.1e-19 99.0 222 36.5
TAR636G0499 Trochodendron aralioides HOM05D002932 ORTHO05D003208 1.5e-18 97.4 222 36.0
Medtr6g034050 Medicago truncatula HOM05D002932 ORTHO05D003208 2.5e-18 96.7 220 38.6
Actinidia31853 Actinidia chinensis HOM05D002932 ORTHO05D003208 3.3e-18 96.3 150 42.0
AUR62021078 Chenopodium quinoa HOM05D002932 ORTHO05D003208 4.3e-18 95.9 219 37.9
TAR374G1073 Trochodendron aralioides HOM05D002932 ORTHO05D003208 7.4e-18 95.1 221 36.2
CSS0045579 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 2.2e-17 93.6 163 40.5
PGR142G0585 Punica granatum HOM05D002932 ORTHO05D003208 2.8e-17 93.2 230 34.8
AUR62031454 Chenopodium quinoa HOM05D002932 ORTHO05D003208 3.7e-17 92.8 217 36.9
Gorai.007G013900 Gossypium raimondii HOM05D002932 ORTHO05D003208 1.4e-16 90.9 192 33.9
Lsat_1_v5_gn_2_133581 Lactuca sativa HOM05D002932 ORTHO05D003208 9.1e-16 88.2 189 37.0
Atru.ctg97_1.61 Acer truncatum HOM05D002932 ORTHO05D003208 1.2e-15 87.8 216 34.7
Peaxi162Scf00618g00627 Petunia axillaris HOM05D002932 ORTHO05D003208 1.2e-15 87.8 191 35.1
HanXRQChr07g0207101 Helianthus annuus HOM05D002932 ORTHO05D003208 1.5e-15 87.4 217 33.2
Nitab4.5_0009102g0020 Nicotiana tabacum HOM05D002932 ORTHO05D003208 2.6e-15 86.7 194 36.1
CAN.G204.10 Capsicum annuum HOM05D002932 ORTHO05D003208 1.4e-13 80.9 221 31.7
Lsat_1_v5_gn_8_6240 Lactuca sativa HOM05D002932 ORTHO05D003208 2.7e-12 76.6 255 32.2
CSS0001843 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 6.1e-12 75.5 120 40.8
Peaxi162Scf00904g00468 Petunia axillaris HOM05D002932 ORTHO05D003208 1.8e-11 73.9 205 31.7
Atru.chr5.594 Acer truncatum HOM05D002932 ORTHO05D003208 3.3e-10 69.7 228 32.0
Dinv43873 Davidia involucrata HOM05D002932 ORTHO05D003208 4.4e-10 69.3 241 29.9
PSO135G1046 Papaver somniferum HOM05D002932 ORTHO05D003208 2.2e-09 67.0 91 37.4
Lsat_1_v5_gn_4_34860 Lactuca sativa HOM05D002932 ORTHO05D003208 6.3e-09 65.5 234 32.5
MBI07_g44813_MAGBIO Magnolia biondii HOM05D002932 ORTHO05D003208 8.2e-09 65.1 225 29.8
vmacro10092 Vaccinium macrocarpon HOM05D002932 ORTHO05D003208 8.2e-09 65.1 135 34.8
PSO384G0628 Papaver somniferum HOM05D002932 ORTHO05D003208 1.4e-08 64.3 91 38.5
MSTRG.27064 Avicennia marina HOM05D002932 ORTHO05D003208 2.4e-08 63.5 149 34.2
PGR031G1724 Punica granatum HOM05D002932 ORTHO05D003208 3.1e-08 63.2 220 30.9
Ciclev10023540m.g Citrus clementina HOM05D002932 ORTHO05D003208 2.0e-07 60.5 223 30.9
PGSC0003DMG402000198 Solanum tuberosum HOM05D002932 ORTHO05D003208 2.6e-07 60.1 292 26.4
TPR.G37115 Trifolium pratense HOM05D002932 ORTHO05D003208 2.6e-07 60.1 237 30.0
Medtr5g039840 Medicago truncatula HOM05D002932 ORTHO05D003208 3.4e-07 59.7 231 27.7
Manes.01G251500 Manihot esculenta HOM05D002932 ORTHO05D003208 4.5e-07 59.3 219 28.3
PGSC0003DMG400028894 Solanum tuberosum HOM05D002932 ORTHO05D003208 4.5e-07 59.3 191 31.9
CsaV3_3G008520 Cucumis sativus L. HOM05D002932 ORTHO05D003208 5.9e-07 58.9 223 30.5
Medtr7g039720 Medicago truncatula HOM05D002932 ORTHO05D003208 7.7e-07 58.5 229 27.9
Sopen10g005630 Solanum pennellii HOM05D002932 ORTHO05D003208 1.0e-06 58.2 228 28.9
Potri.014G091500 Populus trichocarpa HOM05D002932 ORTHO05D003208 1.3e-06 57.8 219 29.7
PGSC0003DMG400019420 Solanum tuberosum HOM05D002932 ORTHO05D003208 1.3e-06 57.8 231 29.9
MELO3C006073.2 Cucumis melo HOM05D002932 ORTHO05D003208 1.7e-06 57.4 223 30.5
Peaxi162Scf00020g00174 Petunia axillaris HOM05D002932 ORTHO05D003208 2.9e-06 56.6 267 25.1
Sabra14G0066400 Salix brachista HOM05D002932 ORTHO05D003208 5.0e-06 55.8 221 29.0
Actinidia20171 Actinidia chinensis HOM05D002932 ORTHO05D003208 6.5e-06 55.5 271 26.2
Aqoxy1G02826 Aquilegia oxysepala HOM05D002932 ORTHO05D003208 8.5e-06 55.1 236 27.1
DCAR_006952 Daucus carota HOM05D002932 ORTHO05D003208 8.5e-06 55.1 230 28.3
Sopen06g012200 Solanum pennellii HOM05D002932 ORTHO05D003208 8.5e-06 55.1 190 27.4


User provided reference genes

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