Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p42550 Brassica napus HOM05D003205 ORTHO05D003746 1.8e-26 121.7 58 100.0
AL1G29520 Arabidopsis lyrata HOM05D003205 ORTHO05D003746 1.4e-13 79.0 46 82.6
CARHR017860 Cardamine hirsuta HOM05D003205 ORTHO05D003746 1.4e-13 79.0 44 86.4
Carub.0001s1703 Capsella rubella HOM05D003205 ORTHO05D003746 1.8e-13 78.6 44 86.4
Sp6g12580 Schrenkiella parvula HOM05D003205 ORTHO05D003746 1.8e-13 78.6 44 86.4
SpUn0015_0050 Schrenkiella parvula HOM05D003205 ORTHO05D003746 1.8e-13 78.6 44 86.4
SpUn0039_0040 Schrenkiella parvula HOM05D003205 ORTHO05D003746 1.8e-13 78.6 44 86.4
AL8G24652 Arabidopsis lyrata HOM05D003205 ORTHO05D003746 2.3e-13 78.2 44 84.1
AT1G17270 Arabidopsis thaliana HOM05D003205 ORTHO05D003746 2.3e-13 78.2 44 86.4
AT5G50420 Arabidopsis thaliana HOM05D003205 ORTHO05D003746 2.3e-13 78.2 44 84.1
BcaC03g14650 Brassica carinata HOM05D003205 ORTHO05D003746 2.3e-13 78.2 44 84.1
C02p20840 Brassica napus HOM05D003205 ORTHO05D003746 2.3e-13 78.2 44 84.1
BolC2t08224H Brassica oleracea HOM05D003205 ORTHO05D003746 2.3e-13 78.2 44 84.1
BcaB03g13009 Brassica carinata HOM05D003205 ORTHO05D003746 3.1e-13 77.8 44 84.1
BcaB05g24050 Brassica carinata HOM05D003205 ORTHO05D003746 3.1e-13 77.8 44 84.1
BcaB05g24051 Brassica carinata HOM05D003205 ORTHO05D003746 3.1e-13 77.8 44 84.1
C08p17800 Brassica napus HOM05D003205 ORTHO05D003746 4.0e-13 77.4 45 84.4
BcaC07g38841 Brassica carinata HOM05D003205 ORTHO05D003746 5.2e-13 77.0 45 82.2
A02p12780 Brassica napus HOM05D003205 ORTHO05D003746 5.2e-13 77.0 44 81.8
A08p31000 Brassica napus HOM05D003205 ORTHO05D003746 5.2e-13 77.0 44 84.1
BraA02t06335Z Brassica rapa HOM05D003205 ORTHO05D003746 5.2e-13 77.0 44 81.8
BraA08t35029Z Brassica rapa HOM05D003205 ORTHO05D003746 5.2e-13 77.0 44 84.1
Carub.0008s1053 Capsella rubella HOM05D003205 ORTHO05D003746 5.2e-13 77.0 44 81.8
Thhalv10007186m.g Eutrema salsugineum HOM05D003205 ORTHO05D003746 5.2e-13 77.0 46 80.4
Sp1g40290 Schrenkiella parvula HOM05D003205 ORTHO05D003746 5.2e-13 77.0 44 84.1
TWI23G1304 Tripterygium wilfordii HOM05D003205 ORTHO05D003746 5.2e-13 77.0 44 84.1
TWI59G0476 Tripterygium wilfordii HOM05D003205 ORTHO05D003746 5.2e-13 77.0 44 84.1
Aa31LG10G1520 Aethionema arabicum HOM05D003205 ORTHO05D003746 6.8e-13 76.6 46 80.4
AL1G62460 Arabidopsis lyrata HOM05D003205 ORTHO05D003746 6.8e-13 76.6 44 86.4
AT1G53770 Arabidopsis thaliana HOM05D003205 ORTHO05D003746 6.8e-13 76.6 44 86.4
A06p00780 Brassica napus HOM05D003205 ORTHO05D003746 6.8e-13 76.6 46 80.4
C06p09550 Brassica napus HOM05D003205 ORTHO05D003746 6.8e-13 76.6 46 80.4
BolC6t36029H Brassica oleracea HOM05D003205 ORTHO05D003746 6.8e-13 76.6 46 80.4
BraA06t23312Z Brassica rapa HOM05D003205 ORTHO05D003746 6.8e-13 76.6 46 80.4
Thhalv10013133m.g Eutrema salsugineum HOM05D003205 ORTHO05D003746 6.8e-13 76.6 44 84.1
Aa31LG7G2080 Aethionema arabicum HOM05D003205 ORTHO05D003746 8.9e-13 76.3 44 84.1
Thhalv10011359m.g Eutrema salsugineum HOM05D003205 ORTHO05D003746 8.9e-13 76.3 44 84.1
THA.LOC104822610 Tarenaya hassleriana HOM05D003205 ORTHO05D003746 8.9e-13 76.3 44 84.1
CARHR044080 Cardamine hirsuta HOM05D003205 ORTHO05D003746 1.2e-12 75.9 44 84.1
Hma1.2p1_0090F.1_g045700 Hydrangea macrophylla HOM05D003205 ORTHO05D003746 1.2e-12 75.9 44 81.8
Manes.11G011700 Manihot esculenta HOM05D003205 ORTHO05D003746 1.2e-12 75.9 44 84.1
Sp1g15400 Schrenkiella parvula HOM05D003205 ORTHO05D003746 1.2e-12 75.9 46 78.3
BcaC08g43556 Brassica carinata HOM05D003205 ORTHO05D003746 1.5e-12 75.5 44 84.1
BolC8t49406H Brassica oleracea HOM05D003205 ORTHO05D003746 1.5e-12 75.5 45 82.2
CANSAT56G3228 Cannabis sativa HOM05D003205 ORTHO05D003746 1.5e-12 75.5 45 80.0
Carub.0001s4304 Capsella rubella HOM05D003205 ORTHO05D003746 1.5e-12 75.5 44 84.1
Dinv20375 Davidia involucrata HOM05D003205 ORTHO05D003746 1.5e-12 75.5 44 79.5
Lj9A539T87 Lonicera japonica HOM05D003205 ORTHO05D003746 1.5e-12 75.5 45 77.8
PSO675G7039 Papaver somniferum HOM05D003205 ORTHO05D003746 1.5e-12 75.5 44 79.5
PGR102G1671 Punica granatum HOM05D003205 ORTHO05D003746 1.5e-12 75.5 44 81.8
Cpa.g.sc25.202 Carica papaya HOM05D003205 ORTHO05D003746 2.0e-12 75.1 44 81.8
AUR62001394 Chenopodium quinoa HOM05D003205 ORTHO05D003746 2.0e-12 75.1 44 79.5
AUR62025609 Chenopodium quinoa HOM05D003205 ORTHO05D003746 2.0e-12 75.1 44 79.5
Oeu019512.1 Olea europaea HOM05D003205 ORTHO05D003746 2.0e-12 75.1 44 79.5
SGA_v2.0_scaffold71G23945 Striga asiatica HOM05D003205 ORTHO05D003746 2.0e-12 75.1 44 77.3
vmacro18715 Vaccinium macrocarpon HOM05D003205 ORTHO05D003746 2.0e-12 75.1 44 79.5
DCAR_022637 Daucus carota HOM05D003205 ORTHO05D003746 2.6e-12 74.7 44 77.3
Potri.003G073500 Populus trichocarpa HOM05D003205 ORTHO05D003746 2.6e-12 74.7 44 79.5
CiPaw.01G210700 Carya illinoinensis HOM05D003205 ORTHO05D003746 3.4e-12 74.3 44 77.3
PSO675G6030 Papaver somniferum HOM05D003205 ORTHO05D003746 3.4e-12 74.3 44 77.3
Rhsim08G0245500 Rhododendron simsii HOM05D003205 ORTHO05D003746 3.4e-12 74.3 44 79.5
Nitab4.5_0006966g0020 Nicotiana tabacum HOM05D003205 ORTHO05D003746 4.4e-12 73.9 45 73.3
Actinidia21844 Actinidia chinensis HOM05D003205 ORTHO05D003746 5.8e-12 73.6 44 77.3
BcaB07g33302 Brassica carinata HOM05D003205 ORTHO05D003746 5.8e-12 73.6 46 82.6
CDE07G0121 Ceratophyllum demersum HOM05D003205 ORTHO05D003746 5.8e-12 73.6 44 77.3
MELO3C026659.2 Cucumis melo HOM05D003205 ORTHO05D003746 5.8e-12 73.6 44 75.0
Gohir.A10G050100 Gossypium hirsutum HOM05D003205 ORTHO05D003746 5.8e-12 73.6 44 77.3
Gohir.D10G050700 Gossypium hirsutum HOM05D003205 ORTHO05D003746 5.8e-12 73.6 44 77.3
Gorai.011G054400 Gossypium raimondii HOM05D003205 ORTHO05D003746 5.8e-12 73.6 44 77.3
Sabra03G0044100 Salix brachista HOM05D003205 ORTHO05D003746 5.8e-12 73.6 44 77.3
Actinidia25998 Actinidia chinensis HOM05D003205 ORTHO05D003746 7.5e-12 73.2 45 77.8
Aqoxy7G00922 Aquilegia oxysepala HOM05D003205 ORTHO05D003746 7.5e-12 73.2 44 75.0
CAN.G790.51 Capsicum annuum HOM05D003205 ORTHO05D003746 7.5e-12 73.2 45 71.1
Nitab4.5_0006338g0030 Nicotiana tabacum HOM05D003205 ORTHO05D003746 7.5e-12 73.2 45 73.3
QL05p000971 Quercus lobata HOM05D003205 ORTHO05D003746 7.5e-12 73.2 44 77.3
Solyc03g123720.4 Solanum lycopersicum HOM05D003205 ORTHO05D003746 7.5e-12 73.2 44 75.0
PGSC0003DMG400009153 Solanum tuberosum HOM05D003205 ORTHO05D003746 7.5e-12 73.2 45 71.1
Sc12g0011020 Simmondsia chinensis HOM05D003205 ORTHO05D003746 9.8e-12 72.8 44 77.3
Sopen03g041490 Solanum pennellii HOM05D003205 ORTHO05D003746 9.8e-12 72.8 44 72.7
vmacro17068 Vaccinium macrocarpon HOM05D003205 ORTHO05D003746 9.8e-12 72.8 44 77.3
vmacro22011 Vaccinium macrocarpon HOM05D003205 ORTHO05D003746 9.8e-12 72.8 44 77.3
Atru.chr1.4171 Acer truncatum HOM05D003205 ORTHO05D003746 1.3e-11 72.4 44 77.3
Actinidia24417 Actinidia chinensis HOM05D003205 ORTHO05D003746 1.3e-11 72.4 44 75.0
Cfa003454 Carpinus fangiana HOM05D003205 ORTHO05D003746 1.3e-11 72.4 44 75.0
Haze_16144 Corylus avellana HOM05D003205 ORTHO05D003746 1.3e-11 72.4 44 75.0
Haze_16148 Corylus avellana HOM05D003205 ORTHO05D003746 1.3e-11 72.4 44 75.0
Gohir.A09G076000 Gossypium hirsutum HOM05D003205 ORTHO05D003746 1.3e-11 72.4 45 75.6
Gohir.D09G075700 Gossypium hirsutum HOM05D003205 ORTHO05D003746 1.3e-11 72.4 45 75.6
Gorai.006G090800 Gossypium raimondii HOM05D003205 ORTHO05D003746 1.3e-11 72.4 45 75.6
Hma1.2p1_1999F.1_g310510 Hydrangea macrophylla HOM05D003205 ORTHO05D003746 1.3e-11 72.4 44 75.0
Nitab4.5_0010570g0030 Nicotiana tabacum HOM05D003205 ORTHO05D003746 1.3e-11 72.4 44 75.0
Prupe.3G030300 Prunus persica HOM05D003205 ORTHO05D003746 1.3e-11 72.4 45 73.3
CsaV3_3G031120 Cucumis sativus L. HOM05D003205 ORTHO05D003746 1.7e-11 72.0 44 75.0
Duzib235G1024 Durio zibethinus HOM05D003205 ORTHO05D003746 1.7e-11 72.0 44 75.0
MD09G1171900 Malus domestica HOM05D003205 ORTHO05D003746 1.7e-11 72.0 45 73.3
MD17G1155100 Malus domestica HOM05D003205 ORTHO05D003746 1.7e-11 72.0 45 73.3
Rhsim12G0213400 Rhododendron simsii HOM05D003205 ORTHO05D003746 1.7e-11 72.0 44 75.0
CSS0017118 Camellia sinensis var. sinensis HOM05D003205 ORTHO05D003746 2.2e-11 71.6 44 75.0
Duzib192G1026 Durio zibethinus HOM05D003205 ORTHO05D003746 2.2e-11 71.6 44 75.0
Gohir.A06G142600 Gossypium hirsutum HOM05D003205 ORTHO05D003746 2.2e-11 71.6 44 75.0
Gohir.D06G148300 Gossypium hirsutum HOM05D003205 ORTHO05D003746 2.2e-11 71.6 44 75.0
SalBow6G2264 Salvia bowleyana HOM05D003205 ORTHO05D003746 2.2e-11 71.6 44 75.0
THA.LOC104812278 Tarenaya hassleriana HOM05D003205 ORTHO05D003746 2.2e-11 71.6 44 77.3
ClCG07G014230 Citrullus lanatus HOM05D003205 ORTHO05D003746 2.9e-11 71.2 44 72.7
Migut.I01142 Erythranthe guttata HOM05D003205 ORTHO05D003746 2.9e-11 71.2 44 75.0
Gorai.010G172800 Gossypium raimondii HOM05D003205 ORTHO05D003746 2.9e-11 71.2 44 72.7
Peaxi162Scf00038g02329 Petunia axillaris HOM05D003205 ORTHO05D003746 2.9e-11 71.2 45 71.1
Solyc06g063120.4 Solanum lycopersicum HOM05D003205 ORTHO05D003746 2.9e-11 71.2 44 72.7
Sopen06g022570 Solanum pennellii HOM05D003205 ORTHO05D003746 2.9e-11 71.2 44 72.7
Thecc.06G131300 Theobroma cacao HOM05D003205 ORTHO05D003746 2.9e-11 71.2 44 75.0
CAN.G1633.1 Capsicum annuum HOM05D003205 ORTHO05D003746 3.7e-11 70.9 44 72.7
Glyma.07G046500 Glycine max HOM05D003205 ORTHO05D003746 3.7e-11 70.9 45 75.6
Lalb_Chr15g0076651 Lupinus albus HOM05D003205 ORTHO05D003746 3.7e-11 70.9 44 72.7
PSO017G4350 Papaver somniferum HOM05D003205 ORTHO05D003746 3.7e-11 70.9 38 84.2
EL10Ac7g18249 Beta vulgaris HOM05D003205 ORTHO05D003746 4.9e-11 70.5 44 77.3
Ciclev10025289m.g Citrus clementina HOM05D003205 ORTHO05D003746 4.9e-11 70.5 44 72.7
HanXRQChr09g0277291 Helianthus annuus HOM05D003205 ORTHO05D003746 4.9e-11 70.5 45 71.1
Sc15g0000850 Simmondsia chinensis HOM05D003205 ORTHO05D003746 4.9e-11 70.5 44 72.7
PGSC0003DMG400004868 Solanum tuberosum HOM05D003205 ORTHO05D003746 4.9e-11 70.5 44 72.7
TAR629G0617 Trochodendron aralioides HOM05D003205 ORTHO05D003746 4.9e-11 70.5 44 72.7
MSTRG.26363 Avicennia marina HOM05D003205 ORTHO05D003746 6.4e-11 70.1 44 72.7
Ca_23465_v3 Cicer arietinum L. HOM05D003205 ORTHO05D003746 6.4e-11 70.1 45 71.1
Lsat_1_v5_gn_4_89601 Lactuca sativa HOM05D003205 ORTHO05D003746 6.4e-11 70.1 45 68.9
Nitab4.5_0006190g0010 Nicotiana tabacum HOM05D003205 ORTHO05D003746 6.4e-11 70.1 44 72.7
Psat4g164760 Pisum sativum HOM05D003205 ORTHO05D003746 6.4e-11 70.1 45 73.3
Sed0013389 Sechium edule HOM05D003205 ORTHO05D003746 6.4e-11 70.1 44 72.7
TPR.G26460 Trifolium pratense HOM05D003205 ORTHO05D003746 6.4e-11 70.1 45 73.3
ClCG11G011670 Citrullus lanatus HOM05D003205 ORTHO05D003746 8.3e-11 69.7 44 70.5
COL.COLO4_30879 Corchorus olitorius HOM05D003205 ORTHO05D003746 8.3e-11 69.7 44 72.7
MBI19_g32878_MAGBIO Magnolia biondii HOM05D003205 ORTHO05D003746 8.3e-11 69.7 43 69.8
Medtr8g023490 Medicago truncatula HOM05D003205 ORTHO05D003746 8.3e-11 69.7 45 71.1
arahy.Tifrunner.gnm1.ann1.228WZM Arachis hypogaea HOM05D003205 ORTHO05D003746 1.1e-10 69.3 44 75.0
arahy.Tifrunner.gnm1.ann1.UC07MD Arachis hypogaea HOM05D003205 ORTHO05D003746 1.1e-10 69.3 44 75.0
MELO3C003961.2 Cucumis melo HOM05D003205 ORTHO05D003746 1.1e-10 69.3 46 67.4
Eucgr.I02168 Eucalyptus grandis HOM05D003205 ORTHO05D003746 1.1e-10 69.3 44 72.7
Eucgr.J02587 Eucalyptus grandis HOM05D003205 ORTHO05D003746 1.1e-10 69.3 44 72.7
Glyma.16G014800 Glycine max HOM05D003205 ORTHO05D003746 1.1e-10 69.3 45 73.3
CsaV3_2G008800 Cucumis sativus L. HOM05D003205 ORTHO05D003746 1.4e-10 68.9 46 65.2
Os07g0572600 Oryza sativa ssp. japonica HOM05D003205 ORTHO05D003746 1.4e-10 68.9 44 70.5
RcHm_v2.0_Chr2g0148131 Rosa chinensis HOM05D003205 ORTHO05D003746 1.4e-10 68.9 44 72.7
HPP92_026494 Vanilla planifolia HOM05D003205 ORTHO05D003746 1.4e-10 68.9 44 72.7
ECA232G0298 Erigeron canadensis HOM05D003205 ORTHO05D003746 1.9e-10 68.6 45 68.9
FvH4_6g36080 Fragaria vesca HOM05D003205 ORTHO05D003746 1.9e-10 68.6 44 70.5
FAN05G2402 Fragaria x ananassa HOM05D003205 ORTHO05D003746 1.9e-10 68.6 44 70.5
FAN09G0286 Fragaria x ananassa HOM05D003205 ORTHO05D003746 1.9e-10 68.6 44 70.5
FAN14G3383 Fragaria x ananassa HOM05D003205 ORTHO05D003746 1.9e-10 68.6 44 70.5
FAN14G4277 Fragaria x ananassa HOM05D003205 ORTHO05D003746 1.9e-10 68.6 44 70.5
Phvul.010G122400 Phaseolus vulgaris HOM05D003205 ORTHO05D003746 1.9e-10 68.6 44 72.7
Lj6g0020924 Lotus japonicus HOM05D003205 ORTHO05D003746 2.4e-10 68.2 45 68.9
Lalb_Chr04g0253981 Lupinus albus HOM05D003205 ORTHO05D003746 2.4e-10 68.2 45 68.9
Oeu006758.2 Olea europaea HOM05D003205 ORTHO05D003746 2.4e-10 68.2 44 72.7
Phvul.009G261000 Phaseolus vulgaris HOM05D003205 ORTHO05D003746 3.2e-10 67.8 46 63.0
VMungo0251G1316 Vigna mungo HOM05D003205 ORTHO05D003746 3.2e-10 67.8 45 71.1
unitig_748.g7075 Utricularia gibba HOM05D003205 ORTHO05D003746 4.1e-10 67.4 44 68.2
VMungo1309G3118 Vigna mungo HOM05D003205 ORTHO05D003746 4.1e-10 67.4 44 65.9
arahy.Tifrunner.gnm1.ann1.YFI140 Arachis hypogaea HOM05D003205 ORTHO05D003746 5.4e-10 67.0 45 68.9
CARHR257910 Cardamine hirsuta HOM05D003205 ORTHO05D003746 5.4e-10 67.0 38 84.2
Cc04_g00620 Coffea canephora HOM05D003205 ORTHO05D003746 5.4e-10 67.0 45 66.7
SHI25231 Sapria himalayana HOM05D003205 ORTHO05D003746 5.4e-10 67.0 44 72.7
Sed0004077 Sechium edule HOM05D003205 ORTHO05D003746 5.4e-10 67.0 44 68.2
SMO117G0321 Selaginella moellendorffii HOM05D003205 ORTHO05D003746 5.4e-10 67.0 47 66.0
SGA_v2.0_scaffold68G22825 Striga asiatica HOM05D003205 ORTHO05D003746 5.4e-10 67.0 44 70.5
HPP92_014233 Vanilla planifolia HOM05D003205 ORTHO05D003746 5.4e-10 67.0 44 70.5
Hund18628 Selenicereus undatus HOM05D003205 ORTHO05D003746 7.1e-10 66.6 44 70.5
ATR0053G062 Amborella trichopoda HOM05D003205 ORTHO05D003746 9.2e-10 66.2 44 68.2
Lalb_Chr10g0101071 Lupinus albus HOM05D003205 ORTHO05D003746 9.2e-10 66.2 45 64.4
arahy.Tifrunner.gnm1.ann1.42RYK8 Arachis hypogaea HOM05D003205 ORTHO05D003746 1.2e-09 65.9 45 66.7
arahy.Tifrunner.gnm1.ann1.N9CMJR Arachis hypogaea HOM05D003205 ORTHO05D003746 1.2e-09 65.9 45 66.7
arahy.Tifrunner.gnm1.ann1.K9Y76V Arachis hypogaea HOM05D003205 ORTHO05D003746 1.6e-09 65.5 45 66.7
Lj5A28T48 Lonicera japonica HOM05D003205 ORTHO05D003746 1.6e-09 65.5 44 68.2
Nn6g35748 Nelumbo nucifera HOM05D003205 ORTHO05D003746 1.6e-09 65.5 43 67.4
MSTRG.22513 Avicennia marina HOM05D003205 ORTHO05D003746 2.1e-09 65.1 44 65.9
CAN.G804.5 Capsicum annuum HOM05D003205 ORTHO05D003746 3.5e-09 64.3 41 70.7
Ah.08g217420 Amaranthus hybridus HOM05D003205 ORTHO05D003746 6.0e-09 63.5 44 70.5
HPP92_012515 Vanilla planifolia HOM05D003205 ORTHO05D003746 1.7e-08 62.0 43 65.1
Zm00001eb107370 Zea mays HOM05D003205 ORTHO05D003746 1.7e-08 62.0 44 63.6
AagrBONN_evm.TU.Sc2ySwM_368.534 Anthoceros agrestis HOM05D003205 ORTHO05D003746 3.6e-06 54.3 44 54.5
Pp3c26_250 Physcomitrium patens HOM05D003205 ORTHO05D003746 8.1e-06 53.1 43 51.2


User provided reference genes

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