Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 6.9e-116 420.6 207 100.0
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 6.9e-116 420.6 207 100.0
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 3.4e-115 418.3 207 99.5
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 3.2e-105 385.2 207 91.3
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 7.9e-88 327.4 207 76.8
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 8.5e-82 307.4 203 75.9
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 2.1e-80 302.8 202 75.7
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 1.0e-79 300.4 202 74.3
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 5.1e-79 298.1 203 73.4
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 1.8e-71 273.1 223 66.4
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 1.6e-67 260.0 216 63.9
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 7.7e-59 231.1 210 57.1
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 1.5e-54 216.9 225 54.2
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 6.3e-53 211.5 199 55.3
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 3.1e-52 209.1 208 55.8
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 3.5e-51 205.7 223 56.5
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 6.1e-48 194.9 120 83.3
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 1.5e-41 173.7 228 44.3
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 7.3e-41 171.4 232 42.7
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 1.2e-40 170.6 231 40.7
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 6.1e-40 168.3 210 44.3
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 2.0e-38 163.3 232 43.1
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 5.8e-38 161.8 232 40.1
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 1.7e-37 160.2 231 42.9
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 2.2e-37 159.8 232 40.5
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 2.9e-37 159.5 221 41.2
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 3.7e-37 159.1 224 42.9
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 4.9e-37 158.7 235 41.7
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 6.4e-37 158.3 223 43.5
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 1.1e-36 157.5 226 42.0
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 3.2e-36 156.0 229 44.1
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 3.2e-36 156.0 221 42.5
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 3.2e-36 156.0 232 36.2
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 4.1e-36 155.6 232 39.7
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 4.1e-36 155.6 235 39.6
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 5.4e-36 155.2 238 38.7
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 5.4e-36 155.2 228 41.7
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 7.0e-36 154.8 222 43.2
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 9.2e-36 154.5 230 38.7
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 9.2e-36 154.5 229 41.5
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 1.2e-35 154.1 226 44.2
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 1.6e-35 153.7 224 41.5
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 2.7e-35 152.9 194 45.4
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.7e-35 152.9 204 44.6
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.7e-35 152.9 194 45.4
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 3.5e-35 152.5 241 38.2
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 3.5e-35 152.5 233 39.5
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 3.5e-35 152.5 225 38.2
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 6.0e-35 151.8 194 45.4
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 7.8e-35 151.4 223 41.3
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 1.0e-34 151.0 224 43.8
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 5.0e-34 148.7 233 41.2
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 5.0e-34 148.7 229 40.2
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 8.6e-34 147.9 236 40.7
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.5e-33 146.4 194 43.8
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 3.3e-33 146.0 223 39.5
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 5.6e-33 145.2 226 38.5
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 5.6e-33 145.2 234 38.5
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 7.3e-33 144.8 231 38.1
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.2e-32 144.1 233 38.6
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 2.1e-32 143.3 226 39.8
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 2.8e-32 142.9 227 40.1
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 3.6e-32 142.5 209 44.5
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 8.0e-32 141.4 235 38.3
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 1.1e-31 141.0 221 41.6
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 1.8e-31 140.2 232 40.1
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 3.1e-31 139.4 229 39.7
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 6.8e-31 138.3 196 41.8
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 8.9e-31 137.9 242 35.5
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 2.0e-30 136.7 234 37.6
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 2.6e-30 136.3 230 38.7
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 7.5e-30 134.8 232 37.1
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 7.5e-30 134.8 225 37.8
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 7.5e-30 134.8 227 37.9
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 9.8e-30 134.4 231 38.1
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 9.8e-30 134.4 227 37.4
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.3e-29 134.0 226 38.5
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 1.7e-29 133.7 244 34.8
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 1.7e-29 133.7 225 37.8
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 6.4e-29 131.7 233 36.1
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 6.4e-29 131.7 240 36.7
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 8.3e-29 131.3 207 41.5
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 1.1e-28 131.0 232 36.6
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 1.4e-28 130.6 223 38.6
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 1.4e-28 130.6 193 39.4
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 1.9e-28 130.2 232 35.3
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 3.2e-28 129.4 232 37.1
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 3.2e-28 129.4 227 37.0
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 4.6e-27 125.6 172 43.0
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 6.6e-26 121.7 211 37.4
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 4.3e-25 119.0 222 33.3
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 3.6e-24 115.9 230 34.8
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 1.8e-23 113.6 208 34.6
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 4.0e-23 112.5 147 44.9
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 6.4e-21 105.1 204 35.3
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 1.4e-20 104.0 101 52.5
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 4.1e-20 102.4 134 43.3
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 1.2e-19 100.9 135 39.3
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 7.8e-19 98.2 244 31.6
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 1.3e-18 97.4 93 54.8
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 8.6e-18 94.7 139 40.3
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 1.1e-17 94.4 53 94.3
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 1.1e-15 87.8 81 59.3
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 1.1e-15 87.8 81 59.3
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 1.8e-15 87.0 215 31.2
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 1.5e-14 84.0 250 30.4
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 3.4e-14 82.8 180 32.2
CSS0035371 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 7.6e-14 81.6 114 36.8
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 2.4e-12 76.6 208 28.8
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 4.2e-12 75.9 177 30.5
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 4.3e-09 65.9 79 46.8
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 7.3e-09 65.1 137 32.1
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 4.0e-07 59.3 229 25.3
SMO325G0002 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 9.0e-07 58.2 236 25.4
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 2.6e-06 56.6 189 22.8
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 2.6e-06 56.6 49 59.2
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 5.8e-06 55.5 49 61.2
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 7.6e-06 55.1 84 36.9


User provided reference genes

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