Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p41580 Brassica napus HOM05D005649 ORTHO05D006837 5.9e-46 187.2 96 100.0
A10p09850 Brassica napus HOM05D005649 ORTHO05D006837 1.0e-42 176.4 96 94.8
BraA10t43066Z Brassica rapa HOM05D005649 ORTHO05D006837 1.0e-42 176.4 96 94.8
BolC9t57041H Brassica oleracea HOM05D005649 ORTHO05D006837 7.0e-39 163.7 80 98.8
Sp6g14410 Schrenkiella parvula HOM05D005649 ORTHO05D006837 2.9e-37 158.3 98 83.7
BcaC01g06166 Brassica carinata HOM05D005649 ORTHO05D006837 1.5e-36 156.0 98 81.6
BcaC01g06170 Brassica carinata HOM05D005649 ORTHO05D006837 1.5e-36 156.0 98 81.6
BolC3t14245H Brassica oleracea HOM05D005649 ORTHO05D006837 1.5e-36 156.0 98 81.6
BcaB01g04189 Brassica carinata HOM05D005649 ORTHO05D006837 1.9e-36 155.6 98 80.6
BraA03t10871Z Brassica rapa HOM05D005649 ORTHO05D006837 3.3e-36 154.8 98 81.6
BcaB08g35564 Brassica carinata HOM05D005649 ORTHO05D006837 6.8e-34 147.1 93 81.7
A03p15810 Brassica napus HOM05D005649 ORTHO05D006837 8.9e-34 146.7 98 77.6
CARHR265080 Cardamine hirsuta HOM05D005649 ORTHO05D006837 9.8e-33 143.3 97 78.4
AL8G26550 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 1.7e-32 142.5 96 72.9
AT5G52160 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 4.9e-32 141.0 97 75.3
C03p18480 Brassica napus HOM05D005649 ORTHO05D006837 4.9e-32 141.0 73 89.0
Thhalv10015124m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 1.6e-30 136.0 98 74.5
Carub.0008s1225 Capsella rubella HOM05D005649 ORTHO05D006837 1.0e-29 133.3 70 85.7
Aa31LG3G8540 Aethionema arabicum HOM05D005649 ORTHO05D006837 5.8e-25 117.5 83 62.7
THA.LOC109117151 Tarenaya hassleriana HOM05D005649 ORTHO05D006837 2.4e-23 112.1 81 64.2
Hma1.2p1_1323F.1_g275520 Hydrangea macrophylla HOM05D005649 ORTHO05D006837 8.6e-21 103.6 91 53.8
Gohir.A11G009800 Gossypium hirsutum HOM05D005649 ORTHO05D006837 3.3e-20 101.7 91 51.6
Gohir.D11G009100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 3.3e-20 101.7 91 51.6
Gorai.007G010700 Gossypium raimondii HOM05D005649 ORTHO05D006837 3.3e-20 101.7 91 51.6
Dinv35188 Davidia involucrata HOM05D005649 ORTHO05D006837 2.8e-19 98.6 92 50.0
CSS0017664 Camellia sinensis var. sinensis HOM05D005649 ORTHO05D006837 8.1e-19 97.1 92 46.7
Gohir.D09G040900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.1e-18 96.7 92 52.2
Potri.015G139100 Populus trichocarpa HOM05D005649 ORTHO05D006837 1.8e-18 95.9 87 50.6
PGR042G0682 Punica granatum HOM05D005649 ORTHO05D006837 2.3e-18 95.5 92 52.2
Prupe.2G290900 Prunus persica HOM05D005649 ORTHO05D006837 3.1e-18 95.1 90 45.6
CAN.G769.4 Capsicum annuum HOM05D005649 ORTHO05D006837 1.2e-17 93.2 88 52.3
TAR629G2474 Trochodendron aralioides HOM05D005649 ORTHO05D006837 1.2e-17 93.2 93 46.2
Atru.chr1.509 Acer truncatum HOM05D005649 ORTHO05D006837 1.5e-17 92.8 88 47.7
AUR62021224 Chenopodium quinoa HOM05D005649 ORTHO05D006837 1.5e-17 92.8 103 43.7
Haze_13744 Corylus avellana HOM05D005649 ORTHO05D006837 1.5e-17 92.8 92 47.8
Ciclev10006307m.g Citrus clementina HOM05D005649 ORTHO05D006837 2.0e-17 92.4 91 46.2
Sabra15G0150200 Salix brachista HOM05D005649 ORTHO05D006837 2.0e-17 92.4 95 49.5
CANSAT21G0877 Cannabis sativa HOM05D005649 ORTHO05D006837 3.4e-17 91.7 85 50.6
Duzib068G0970 Durio zibethinus HOM05D005649 ORTHO05D006837 4.4e-17 91.3 63 61.9
Glyma.09G144000 Glycine max HOM05D005649 ORTHO05D006837 4.4e-17 91.3 93 47.3
Oeu062770.1 Olea europaea HOM05D005649 ORTHO05D006837 5.8e-17 90.9 98 49.0
SalBow6G0552 Salvia bowleyana HOM05D000001 ORTHO05D010467 5.8e-17 90.9 62 61.3
Thecc.03G171600 Theobroma cacao HOM05D005649 ORTHO05D006837 5.8e-17 90.9 80 53.8
AUR62016019 Chenopodium quinoa HOM05D005649 ORTHO05D006837 7.6e-17 90.5 103 42.7
SalBow6G6599 Salvia bowleyana HOM05D000001 ORTHO05D010467 7.6e-17 90.5 62 59.7
Cc02_g03310 Coffea canephora HOM05D005649 ORTHO05D006837 1.3e-16 89.7 93 53.8
Migut.F01138 Erythranthe guttata HOM05D005649 ORTHO05D006837 1.3e-16 89.7 86 52.3
Potri.012G137400 Populus trichocarpa HOM05D005649 ORTHO05D006837 1.3e-16 89.7 94 44.7
CiPaw.03G103300 Carya illinoinensis HOM05D005649 ORTHO05D006837 1.7e-16 89.4 91 46.2
Peaxi162Scf00040g00425 Petunia axillaris HOM05D005649 ORTHO05D006837 1.7e-16 89.4 89 48.3
Sc13g0008480 Simmondsia chinensis HOM05D005649 ORTHO05D006837 2.2e-16 89.0 88 50.0
MELO3C006883.2 Cucumis melo HOM05D005649 ORTHO05D006837 3.7e-16 88.2 94 47.9
CsaV3_3G016880 Cucumis sativus L. HOM05D005649 ORTHO05D006837 3.7e-16 88.2 94 47.9
EL10Ac3g05710 Beta vulgaris HOM05D005649 ORTHO05D006837 4.9e-16 87.8 98 42.9
Nitab4.5_0002107g0070 Nicotiana tabacum HOM05D005649 ORTHO05D006837 4.9e-16 87.8 81 48.1
Actinidia03109 Actinidia chinensis HOM05D005649 ORTHO05D006837 6.4e-16 87.4 91 42.9
CiPaw.04G066700 Carya illinoinensis HOM05D005649 ORTHO05D006837 8.3e-16 87.0 87 46.0
Medtr1g101360 Medicago truncatula HOM05D005649 ORTHO05D006837 8.3e-16 87.0 82 48.8
Phvul.004G120100 Phaseolus vulgaris HOM05D005649 ORTHO05D006837 8.3e-16 87.0 83 48.2
Duzib084G1193 Durio zibethinus HOM05D005649 ORTHO05D006837 1.1e-15 86.7 86 46.5
Nitab4.5_0004480g0060 Nicotiana tabacum HOM05D005649 ORTHO05D006837 1.1e-15 86.7 94 45.7
RcHm_v2.0_Chr1g0376811 Rosa chinensis HOM05D005649 ORTHO05D006837 1.1e-15 86.7 91 45.1
Psat0s6119g0040 Pisum sativum HOM05D005649 ORTHO05D006837 1.4e-15 86.3 83 47.0
Glyma.16G197100 Glycine max HOM05D005649 ORTHO05D006837 2.4e-15 85.5 93 48.4
HanXRQChr14g0462161 Helianthus annuus HOM05D005649 ORTHO05D006837 3.2e-15 85.1 87 47.1
Lalb_Chr01g0009161 Lupinus albus HOM05D005649 ORTHO05D006837 3.2e-15 85.1 94 48.9
SalBow2G3129 Salvia bowleyana HOM05D005649 ORTHO05D006837 3.2e-15 85.1 77 50.6
Solyc01g009590.3 Solanum lycopersicum HOM05D005649 ORTHO05D006837 4.1e-15 84.7 64 54.7
Sopen01g005120 Solanum pennellii HOM05D005649 ORTHO05D006837 4.1e-15 84.7 64 54.7
FvH4_7g29091 Fragaria vesca HOM05D005649 ORTHO05D006837 5.4e-15 84.3 93 45.2
FAN03G0279 Fragaria x ananassa HOM05D005649 ORTHO05D006837 5.4e-15 84.3 93 45.2
Gohir.D12G260900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 5.4e-15 84.3 87 46.0
Gorai.008G279600 Gossypium raimondii HOM05D005649 ORTHO05D006837 5.4e-15 84.3 87 46.0
Ah.07g209060 Amaranthus hybridus HOM05D005649 ORTHO05D006837 7.1e-15 84.0 86 44.2
COL.COLO4_14273 Corchorus olitorius HOM05D005649 ORTHO05D006837 7.1e-15 84.0 89 48.3
Gohir.A12G260100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 7.1e-15 84.0 92 44.6
MD01G1197500 Malus domestica HOM05D005649 ORTHO05D006837 7.1e-15 84.0 86 39.5
TWI63G0636 Tripterygium wilfordii HOM05D005649 ORTHO05D006837 7.1e-15 84.0 79 44.3
DCAR_014595 Daucus carota HOM05D005649 ORTHO05D006837 9.2e-15 83.6 95 40.0
Cpa.g.sc107.18 Carica papaya HOM05D005649 ORTHO05D006837 1.6e-14 82.8 81 50.6
Solyc06g035820.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 1.6e-14 82.8 87 41.4
SGA_v2.0_scaffold10G05368 Striga asiatica HOM05D005649 ORTHO05D006837 1.6e-14 82.8 92 48.9
TPR.G17428 Trifolium pratense HOM05D005649 ORTHO05D006837 2.1e-14 82.4 80 47.5
HPP92_025369 Vanilla planifolia HOM05D005649 ORTHO05D006837 2.1e-14 82.4 77 50.6
DCAR_018179 Daucus carota HOM05D005649 ORTHO05D006837 2.7e-14 82.0 96 44.8
Manes.14G028300 Manihot esculenta HOM05D005649 ORTHO05D006837 2.7e-14 82.0 88 46.6
Sed0000609 Sechium edule HOM05D005649 ORTHO05D006837 2.7e-14 82.0 83 50.6
HPP92_025495 Vanilla planifolia HOM05D005649 ORTHO05D006837 2.7e-14 82.0 81 48.1
Actinidia34088 Actinidia chinensis HOM05D005649 ORTHO05D006837 3.5e-14 81.6 102 42.2
CAN.G28.8 Capsicum annuum HOM05D005649 ORTHO05D006837 3.5e-14 81.6 85 38.8
PSO782G2995 Papaver somniferum HOM05D005649 ORTHO05D006837 3.5e-14 81.6 92 43.5
Sed0025700 Sechium edule HOM05D005649 ORTHO05D006837 3.5e-14 81.6 80 50.0
Migut.F00365 Erythranthe guttata HOM05D005649 ORTHO05D006837 6.0e-14 80.9 87 44.8
Lsat_1_v5_gn_2_132960 Lactuca sativa HOM05D005649 ORTHO05D006837 6.0e-14 80.9 82 45.1
Solyc03g026115.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 1.7e-13 79.3 85 42.4
CAN.G166.5 Capsicum annuum HOM05D005649 ORTHO05D006837 3.9e-13 78.2 89 44.9
Eucgr.K00231 Eucalyptus grandis HOM05D005649 ORTHO05D006837 5.1e-13 77.8 86 45.3
PSO478G4859 Papaver somniferum HOM05D005649 ORTHO05D006837 5.1e-13 77.8 98 40.8
Lalb_Chr19g0130991 Lupinus albus HOM05D005649 ORTHO05D006837 6.6e-13 77.4 91 47.3
PSO782G3448 Papaver somniferum HOM05D005649 ORTHO05D006837 6.6e-13 77.4 98 40.8
Ca_10790_v3 Cicer arietinum L. HOM05D005649 ORTHO05D006837 8.6e-13 77.0 89 43.8
DCAR_018177 Daucus carota HOM05D005649 ORTHO05D006837 8.6e-13 77.0 96 42.7
Aqoxy7G00428 Aquilegia oxysepala HOM05D005649 ORTHO05D006837 1.1e-12 76.6 96 39.6
PGSC0003DMG400004517 Solanum tuberosum HOM05D000087 ORTHO05D000439 1.5e-12 76.3 71 43.7
CDE11G0782 Ceratophyllum demersum HOM05D005649 ORTHO05D006837 4.3e-12 74.7 79 40.5
ATR0757G068 Amborella trichopoda HOM05D005649 ORTHO05D006837 7.3e-12 73.9 81 42.0
Lj2g0004156 Lotus japonicus HOM05D005649 ORTHO05D006837 1.6e-11 72.8 86 40.7
Nn8g41026 Nelumbo nucifera HOM05D005649 ORTHO05D006837 1.6e-11 72.8 91 36.3
FAN03G1726 Fragaria x ananassa HOM05D005649 ORTHO05D006837 3.6e-11 71.6 52 53.8
QL09p014765 Quercus lobata HOM05D005649 ORTHO05D006837 8.1e-11 70.5 91 38.5
Peaxi162Scf00132g01516 Petunia axillaris HOM05D005649 ORTHO05D006837 1.4e-10 69.7 85 42.4
Nn1g01375 Nelumbo nucifera HOM05D005649 ORTHO05D006837 1.8e-10 69.3 65 47.7
CARHR205910 Cardamine hirsuta HOM05D005649 ORTHO05D006837 3.1e-10 68.6 82 37.8
BcaC06g32460 Brassica carinata HOM05D005649 ORTHO05D006837 5.2e-10 67.8 79 40.5
Carub.0006s0617 Capsella rubella HOM05D005649 ORTHO05D006837 5.2e-10 67.8 66 40.9
Sp2g25250 Schrenkiella parvula HOM05D005649 ORTHO05D006837 5.2e-10 67.8 79 36.7
C09p69350 Brassica napus HOM05D005649 ORTHO05D006837 6.8e-10 67.4 87 37.9
BolC9t59679H Brassica oleracea HOM05D005649 ORTHO05D006837 6.8e-10 67.4 87 37.9
TAR636G3290 Trochodendron aralioides HOM05D000087 ORTHO05D000439 6.8e-10 67.4 78 42.3
Sp6g35660 Schrenkiella parvula HOM05D005649 ORTHO05D006837 8.9e-10 67.0 90 34.4
A10p28990 Brassica napus HOM05D005649 ORTHO05D006837 1.2e-09 66.6 87 36.8
BraA10t44947Z Brassica rapa HOM05D005649 ORTHO05D006837 1.2e-09 66.6 87 36.8
Thhalv10015126m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 1.2e-09 66.6 90 32.2
Aa31LG2G14300 Aethionema arabicum HOM05D005649 ORTHO05D006837 1.3e-08 63.2 87 33.3
Aa31LG2G14310 Aethionema arabicum HOM05D005649 ORTHO05D006837 1.7e-08 62.8 83 37.3
AL6G17460 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 2.2e-08 62.4 94 33.0
PSO782G4359 Papaver somniferum HOM05D005649 ORTHO05D006837 3.8e-08 61.6 89 37.1
AT5G07230 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 3.2e-07 58.5 94 31.9
Zm00001eb198610 Zea mays HOM05D005649 ORTHO05D006837 3.2e-07 58.5 65 41.5
Zm00001eb319020 Zea mays HOM05D005649 ORTHO05D006837 7.1e-07 57.4 66 42.4
Os09g0525500 Oryza sativa ssp. japonica HOM05D005649 ORTHO05D006837 2.7e-06 55.5 88 38.6


User provided reference genes

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