Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20616 Brassica carinata HOM05D005755 ORTHO05D007006 1.3e-48 196.1 99 100.0
C09p41470 Brassica napus HOM05D005755 ORTHO05D007006 1.3e-48 196.1 99 100.0
BolC9t57024H Brassica oleracea HOM05D005755 ORTHO05D007006 1.3e-48 196.1 99 100.0
A10p09750 Brassica napus HOM05D005755 ORTHO05D007006 1.1e-47 193.0 99 99.0
BraA10t43055Z Brassica rapa HOM05D005755 ORTHO05D007006 3.2e-47 191.4 99 98.0
BcaB08g35550 Brassica carinata HOM05D005755 ORTHO05D007006 3.4e-44 181.4 102 93.1
CARHR264900 Cardamine hirsuta HOM05D005755 ORTHO05D007006 5.0e-40 167.5 108 83.3
AT5G51960 Arabidopsis thaliana HOM05D005755 ORTHO05D007006 1.5e-39 166.0 104 84.6
Sp6g14210 Schrenkiella parvula HOM05D005755 ORTHO05D007006 1.5e-39 166.0 108 81.5
BcaC03g14561 Brassica carinata HOM05D005755 ORTHO05D007006 1.2e-38 162.9 98 85.7
C02p20090 Brassica napus HOM05D005755 ORTHO05D007006 1.2e-38 162.9 98 85.7
Thhalv10015092m.g Eutrema salsugineum HOM05D005755 ORTHO05D007006 1.2e-38 162.9 105 81.9
BolC2t08139H Brassica oleracea HOM05D005755 ORTHO05D007006 1.6e-38 162.5 98 85.7
AL8G32330 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 2.1e-38 162.2 104 82.7
BraA02t06267Z Brassica rapa HOM05D005755 ORTHO05D007006 2.1e-38 162.2 98 85.7
BcaB05g23952 Brassica carinata HOM05D005755 ORTHO05D007006 6.8e-37 157.1 97 82.5
AL8G26290 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 8.8e-37 156.8 102 81.4
Carub.0008s1205 Capsella rubella HOM05D005755 ORTHO05D007006 8.8e-37 156.8 103 79.6
Aa31LG7G12880 Aethionema arabicum HOM05D005755 ORTHO05D007006 6.3e-35 150.6 102 73.5
THA.LOC104799357 Tarenaya hassleriana HOM05D005755 ORTHO05D007006 7.0e-34 147.1 105 68.6
Peaxi162Scf00111g00718 Petunia axillaris HOM05D005755 ORTHO05D007006 3.5e-33 144.8 108 68.5
Peaxi162Scf00373g00210 Petunia axillaris HOM05D005755 ORTHO05D007006 1.0e-32 143.3 102 70.6
Dinv04676 Davidia involucrata HOM05D005755 ORTHO05D007006 2.3e-32 142.1 105 66.7
Oeu057236.1 Olea europaea HOM05D005755 ORTHO05D007006 2.3e-32 142.1 95 74.7
Hma1.2p1_0157F.1_g068960 Hydrangea macrophylla HOM05D005755 ORTHO05D007006 1.9e-31 139.0 101 68.3
Oeu017232.1 Olea europaea HOM05D005755 ORTHO05D007006 2.5e-31 138.7 95 72.6
Dinv11808 Davidia involucrata HOM05D005755 ORTHO05D007006 5.6e-31 137.5 105 64.8
vmacro04890 Vaccinium macrocarpon HOM05D005755 ORTHO05D007006 9.5e-31 136.7 102 67.6
SGA_v2.0_scaffold122G33246 Striga asiatica HOM05D005940 ORTHO05D007027 1.6e-30 136.0 97 70.1
TAR381G1573 Trochodendron aralioides HOM05D005755 ORTHO05D007006 2.8e-30 135.2 105 62.9
Cpa.g.sc53.20 Carica papaya HOM05D005755 ORTHO05D007006 3.6e-30 134.8 104 65.4
Ciclev10033129m.g Citrus clementina HOM05D005755 ORTHO05D007006 3.6e-30 134.8 111 63.1
Migut.F01798 Erythranthe guttata HOM05D005755 ORTHO05D007006 3.6e-30 134.8 101 64.4
MSTRG.8164 Avicennia marina HOM05D005755 ORTHO05D007006 4.7e-30 134.4 97 68.0
DCAR_015273 Daucus carota HOM05D005755 ORTHO05D007006 4.7e-30 134.4 105 63.8
Sc05g0001890 Simmondsia chinensis HOM05D005755 ORTHO05D007006 6.1e-30 134.0 102 64.7
Atru.chr12.636 Acer truncatum HOM05D005755 ORTHO05D007006 8.0e-30 133.7 103 63.1
Cc00_g19060 Coffea canephora HOM05D005755 ORTHO05D007006 1.0e-29 133.3 106 62.3
Nitab4.5_0000061g0170 Nicotiana tabacum HOM05D005755 ORTHO05D007006 1.0e-29 133.3 102 64.7
Nitab4.5_0001721g0080 Nicotiana tabacum HOM05D005755 ORTHO05D007006 1.0e-29 133.3 103 64.1
Hund18453 Selenicereus undatus HOM05D005755 ORTHO05D007006 1.4e-29 132.9 103 64.1
Sopen04g020610 Solanum pennellii HOM05D005755 ORTHO05D007006 1.4e-29 132.9 102 64.7
Sopen07g033930 Solanum pennellii HOM05D005755 ORTHO05D007006 1.4e-29 132.9 102 65.7
Thecc.10G068000 Theobroma cacao HOM05D005755 ORTHO05D007006 1.4e-29 132.9 112 61.6
Actinidia38859 Actinidia chinensis HOM05D005755 ORTHO05D007006 1.8e-29 132.5 97 70.1
CANSAT11G0923 Cannabis sativa HOM05D005755 ORTHO05D007006 1.8e-29 132.5 111 64.0
Sed0018161 Sechium edule HOM05D005755 ORTHO05D007006 1.8e-29 132.5 111 63.1
Eucgr.G02800 Eucalyptus grandis HOM05D005755 ORTHO05D007006 2.3e-29 132.1 105 63.8
Solyc07g065720.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 3.0e-29 131.7 101 66.3
FvH4_7g20160 Fragaria vesca HOM05D005755 ORTHO05D007006 4.0e-29 131.3 105 65.7
Glyma.05G164400 Glycine max HOM05D005755 ORTHO05D007006 4.0e-29 131.3 105 62.9
Nn5g30302 Nelumbo nucifera HOM05D005755 ORTHO05D007006 4.0e-29 131.3 105 62.9
RcHm_v2.0_Chr1g0364121 Rosa chinensis HOM05D005755 ORTHO05D007006 4.0e-29 131.3 105 65.7
PGSC0003DMG400022164 Solanum tuberosum HOM05D005755 ORTHO05D007006 4.0e-29 131.3 102 64.7
CAN.G79.77 Capsicum annuum HOM05D005755 ORTHO05D007006 5.2e-29 131.0 102 63.7
CsaV3_3G030820 Cucumis sativus L. HOM05D005755 ORTHO05D007006 5.2e-29 131.0 105 64.8
Glyma.08G121800 Glycine max HOM05D005755 ORTHO05D007006 5.2e-29 131.0 105 62.9
MD07G1179300 Malus domestica HOM05D005755 ORTHO05D007006 5.2e-29 131.0 111 64.9
FAN10G3796 Fragaria x ananassa HOM05D005755 ORTHO05D007006 6.8e-29 130.6 105 64.8
Solyc04g049970.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 8.9e-29 130.2 101 64.4
EL10Ac6g13227 Beta vulgaris HOM05D005755 ORTHO05D007006 1.2e-28 129.8 100 65.0
ECA238G0308 Erigeron canadensis HOM05D005755 ORTHO05D007006 1.2e-28 129.8 103 64.1
Prupe.2G218600 Prunus persica HOM05D005755 ORTHO05D007006 1.5e-28 129.4 105 62.9
Manes.10G042600 Manihot esculenta HOM05D005755 ORTHO05D007006 2.0e-28 129.0 109 59.6
QL08p056843 Quercus lobata HOM05D005755 ORTHO05D007006 2.0e-28 129.0 104 65.4
Gohir.A01G133200 Gossypium hirsutum HOM05D005755 ORTHO05D007006 2.6e-28 128.6 105 61.0
EL10Ac7g15953 Beta vulgaris HOM05D005755 ORTHO05D007006 3.4e-28 128.3 100 65.0
CSS0044562 Camellia sinensis var. sinensis HOM05D005755 ORTHO05D007006 3.4e-28 128.3 103 63.1
Lsat_1_v5_gn_2_46180 Lactuca sativa HOM05D005755 ORTHO05D007006 3.4e-28 128.3 104 59.6
Gorai.002G143500 Gossypium raimondii HOM05D005755 ORTHO05D007006 4.4e-28 127.9 105 61.0
EL10Ac3g06003 Beta vulgaris HOM05D005755 ORTHO05D007006 5.7e-28 127.5 100 65.0
MBI19_g25006_MAGBIO Magnolia biondii HOM05D005755 ORTHO05D007006 5.7e-28 127.5 104 63.5
MD01G1131200 Malus domestica HOM05D005755 ORTHO05D007006 5.7e-28 127.5 105 62.9
EL10Ac7g17935 Beta vulgaris HOM05D005755 ORTHO05D007006 7.5e-28 127.1 99 65.7
SalBow1G5334 Salvia bowleyana HOM05D005755 ORTHO05D007006 7.5e-28 127.1 94 69.1
SalBow1G7067 Salvia bowleyana HOM05D005755 ORTHO05D007006 7.5e-28 127.1 94 69.1
Duzib106G1131 Durio zibethinus HOM05D005755 ORTHO05D007006 9.8e-28 126.7 103 60.2
GSVIVG01016339001 Vitis vinifera HOM05D005755 ORTHO05D007006 9.8e-28 126.7 105 60.0
Duzib114G0063 Durio zibethinus HOM05D005755 ORTHO05D007006 1.3e-27 126.3 102 59.8
FAN01G0677 Fragaria x ananassa HOM05D005755 ORTHO05D007006 1.3e-27 126.3 105 62.9
Phvul.002G244400 Phaseolus vulgaris HOM05D005755 ORTHO05D007006 1.3e-27 126.3 105 59.0
PGR142G0594 Punica granatum HOM05D005755 ORTHO05D007006 2.2e-27 125.6 107 58.9
SalBow3G2244 Salvia bowleyana HOM05D005755 ORTHO05D007006 2.2e-27 125.6 94 68.1
SalBow3G3619 Salvia bowleyana HOM05D005755 ORTHO05D007006 2.2e-27 125.6 94 68.1
FAN06G3582 Fragaria x ananassa HOM05D005755 ORTHO05D007006 3.7e-27 124.8 103 62.1
TWI15G0398 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 3.7e-27 124.8 99 64.6
Lalb_Chr07g0186081 Lupinus albus HOM05D005755 ORTHO05D007006 6.4e-27 124.0 107 59.8
Potri.008G044200 Populus trichocarpa HOM05D005755 ORTHO05D007006 6.4e-27 124.0 105 58.1
arahy.Tifrunner.gnm1.ann1.FL0JYU Arachis hypogaea HOM05D005755 ORTHO05D007006 1.1e-26 123.2 110 59.1
arahy.Tifrunner.gnm1.ann1.QA5RE0 Arachis hypogaea HOM05D005755 ORTHO05D007006 1.1e-26 123.2 110 59.1
CiPaw.15G145100 Carya illinoinensis HOM05D005755 ORTHO05D007006 1.1e-26 123.2 105 60.0
AUR62037483 Chenopodium quinoa HOM05D005755 ORTHO05D007006 1.1e-26 123.2 100 60.0
Ca_19066_v3 Cicer arietinum L. HOM05D005755 ORTHO05D007006 1.4e-26 122.9 103 58.3
TPR.G12499 Trifolium pratense HOM05D005755 ORTHO05D007006 1.4e-26 122.9 103 58.3
Rhsim09G0154200 Rhododendron simsii HOM05D001639 ORTHO05D004140 2.4e-26 122.1 127 54.3
Ah.04g160050 Amaranthus hybridus HOM05D005755 ORTHO05D007006 3.2e-26 121.7 101 60.4
Medtr6g068850 Medicago truncatula HOM05D005755 ORTHO05D007006 4.1e-26 121.3 103 57.3
PSO675G6920 Papaver somniferum HOM05D005755 ORTHO05D007006 5.4e-26 120.9 106 58.5
Psat1g119080 Pisum sativum HOM05D005755 ORTHO05D007006 5.4e-26 120.9 101 59.4
Potri.010G217300 Populus trichocarpa HOM05D005755 ORTHO05D007006 5.4e-26 120.9 103 58.3
EL10Ac5g11654 Beta vulgaris HOM05D005755 ORTHO05D007006 7.0e-26 120.6 95 65.3
AUR62004768 Chenopodium quinoa HOM05D005755 ORTHO05D007006 7.0e-26 120.6 100 59.0
FAN03G2322 Fragaria x ananassa HOM05D005755 ORTHO05D007006 7.0e-26 120.6 100 63.0
Aqoxy3G01116 Aquilegia oxysepala HOM05D005755 ORTHO05D007006 9.2e-26 120.2 106 57.5
HPP92_016041 Vanilla planifolia HOM05D005755 ORTHO05D007006 9.2e-26 120.2 105 58.1
CDE10G1261 Ceratophyllum demersum HOM05D005755 ORTHO05D007006 1.6e-25 119.4 105 56.2
Sabra08G0030600 Salix brachista HOM05D005755 ORTHO05D007006 2.0e-25 119.0 103 58.3
Cfa019629 Carpinus fangiana HOM05D005755 ORTHO05D007006 1.0e-24 116.7 109 56.9
Gohir.D01G118000 Gossypium hirsutum HOM05D005755 ORTHO05D007006 1.0e-24 116.7 123 52.0
Os11g0133900 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 3.0e-24 115.2 97 62.9
unitig_8.g3685 Utricularia gibba HOM05D005755 ORTHO05D007006 3.0e-24 115.2 94 63.8
ATR1096G048 Amborella trichopoda HOM05D005755 ORTHO05D007006 6.6e-24 114.0 105 56.2
Lj4g0006534 Lotus japonicus HOM05D005755 ORTHO05D007006 6.6e-24 114.0 105 56.2
TWI38G1562 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 6.6e-24 114.0 102 56.9
VMungo0251G2378 Vigna mungo HOM05D001210 ORTHO05D001036 6.6e-24 114.0 100 58.0
SGA_v2.0_scaffold71G24037 Striga asiatica HOM05D005755 ORTHO05D007006 8.6e-24 113.6 96 58.3
Zm00001eb235420 Zea mays HOM05D005755 ORTHO05D007006 2.1e-22 109.0 101 60.4
Zm00001eb163500 Zea mays HOM05D005755 ORTHO05D007006 1.2e-20 103.2 101 56.4
SEGI_41538 Sequoiadendron giganteum HOM05D005755 ORTHO05D007006 5.8e-20 100.9 103 49.5
Os12g0131266 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 7.0e-18 94.0 81 60.5
AL792U10010 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 1.2e-17 93.2 66 75.8
A02p12030 Brassica napus HOM05D005755 ORTHO05D007006 7.8e-17 90.5 62 74.2
Glyma.19G087500 Glycine max HOM05D005755 ORTHO05D007006 5.0e-16 87.8 96 51.0
TPR.G31353 Trifolium pratense HOM05D005755 ORTHO05D007006 1.5e-15 86.3 54 74.1
SMO207G0003 Selaginella moellendorffii HOM05D005755 ORTHO05D007006 2.8e-14 82.0 101 46.5
Pp3c3_10790 Physcomitrium patens HOM05D005755 ORTHO05D007006 3.6e-14 81.6 106 43.4
Oeu057237.1 Olea europaea HOM05D005755 ORTHO05D007006 6.8e-13 77.4 61 63.9
AagrBONN_evm.TU.Sc2ySwM_362.2659 Anthoceros agrestis HOM05D005755 ORTHO05D007006 9.9e-12 73.6 95 42.1
Mapoly0006s0175 Marchantia polymorpha HOM05D005755 ORTHO05D007006 1.3e-11 73.2 99 40.4
Prupe.2G218400 Prunus persica HOM05D005755 ORTHO05D007006 7.1e-10 67.4 103 45.6
HanXRQChr14g0436521 Helianthus annuus HOM05D005755 ORTHO05D007006 1.1e-07 60.1 67 40.3
Lj3g0006677 Lotus japonicus HOM05D005755 ORTHO05D007006 5.6e-07 57.8 64 45.3
Haze_18895 Corylus avellana HOM05D005755 ORTHO05D007006 6.2e-06 54.3 86 40.7
Lj3g0023846 Lotus japonicus HOM05D005755 ORTHO05D007006 8.1e-06 53.9 67 43.3


User provided reference genes

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