Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p41240 Brassica napus HOM05D005963 ORTHO05D006869 0.0e+00 1362.4 694 100.0
BolC9t56999H Brassica oleracea HOM05D005963 ORTHO05D006869 0.0e+00 1285.0 656 100.0
A10p09630 Brassica napus HOM05D005963 ORTHO05D006869 0.0e+00 1257.7 658 97.7
BraA10t43044Z Brassica rapa HOM05D005963 ORTHO05D006869 0.0e+00 1257.7 658 97.7
BcaC04g20635 Brassica carinata HOM05D005963 ORTHO05D006869 0.0e+00 1221.1 656 96.2
BcaB08g35527 Brassica carinata HOM05D005963 ORTHO05D006869 0.0e+00 1097.4 662 87.3
A02p12120 Brassica napus HOM05D005963 ORTHO05D006869 3.0e-301 1038.1 663 82.8
BraA02t06276Z Brassica rapa HOM05D005963 ORTHO05D006869 3.0e-301 1038.1 663 82.8
Sp6g14050 Schrenkiella parvula HOM05D005963 ORTHO05D006869 2.3e-296 1021.9 668 81.1
Thhalv10015853m.g Eutrema salsugineum HOM05D005963 ORTHO05D006869 5.6e-295 1017.3 669 81.6
AL8G26090 Arabidopsis lyrata HOM05D005963 ORTHO05D006869 3.5e-289 998.0 672 79.3
BolC2t08150H Brassica oleracea HOM05D005963 ORTHO05D006869 4.7e-286 987.6 662 79.3
BcaC03g14575 Brassica carinata HOM05D005963 ORTHO05D006869 8.1e-286 986.9 662 79.3
C02p20220 Brassica napus HOM05D005963 ORTHO05D006869 1.1e-285 986.5 662 79.3
Carub.0008s1182 Capsella rubella HOM05D005963 ORTHO05D006869 6.6e-280 967.2 670 77.9
AT5G51800 Arabidopsis thaliana HOM05D005963 ORTHO05D006869 6.2e-278 960.7 669 76.7
CARHR264680 Cardamine hirsuta HOM05D005963 ORTHO05D006869 2.0e-276 955.7 673 77.3
THA.LOC104825083 Tarenaya hassleriana HOM05D005963 ORTHO05D006869 6.6e-187 658.3 549 62.1
GSVIVG01018456001 Vitis vinifera HOM05D005963 ORTHO05D006869 2.8e-161 573.2 621 54.3
Duzib205G1443 Durio zibethinus HOM05D005963 ORTHO05D006869 3.6e-161 572.8 664 50.6
Rhsim03G0174100 Rhododendron simsii HOM05D005963 ORTHO05D006869 1.3e-158 564.3 691 50.8
Thecc.03G166100 Theobroma cacao HOM05D005963 ORTHO05D006869 1.3e-158 564.3 711 48.9
Actinidia13537 Actinidia chinensis HOM05D005963 ORTHO05D006869 8.4e-158 561.6 701 48.4
Actinidia25056 Actinidia chinensis HOM05D005963 ORTHO05D006869 2.1e-156 557.0 612 52.5
Cpa.g.sc4.183 Carica papaya HOM05D005963 ORTHO05D006869 2.7e-156 556.6 736 48.4
Hma1.2p1_0488F.1_g163860 Hydrangea macrophylla HOM05D005963 ORTHO05D006869 1.0e-155 554.7 698 48.9
Prupe.2G286400 Prunus persica HOM05D005963 ORTHO05D006869 5.1e-155 552.4 735 47.3
Aqoxy7G00515 Aquilegia oxysepala HOM05D005963 ORTHO05D006869 6.6e-155 552.0 695 49.2
Ciclev10004233m.g Citrus clementina HOM05D005963 ORTHO05D006869 2.5e-154 550.1 657 49.9
MD01G1192000 Malus domestica HOM05D005963 ORTHO05D006869 3.3e-154 549.7 680 49.0
MD00G1003400 Malus domestica HOM05D005963 ORTHO05D006869 1.2e-153 547.7 686 50.0
Haze_13797 Corylus avellana HOM05D005963 ORTHO05D006869 2.8e-153 546.6 638 50.6
Duzib068G1175 Durio zibethinus HOM05D005963 ORTHO05D006869 6.2e-153 545.4 742 46.9
Potri.012G132300 Populus trichocarpa HOM05D005963 ORTHO05D006869 6.2e-153 545.4 717 47.4
CSS0028871 Camellia sinensis var. sinensis HOM05D005963 ORTHO05D006869 8.1e-153 545.0 725 47.6
Peaxi162Scf00192g00613 Petunia axillaris HOM05D005963 ORTHO05D006869 1.4e-152 544.3 632 50.6
FAN06G4856 Fragaria x ananassa HOM05D005963 ORTHO05D006869 9.0e-152 541.6 698 48.4
HanXRQChr14g0433491 Helianthus annuus HOM05D005963 ORTHO05D006869 2.0e-151 540.4 635 50.2
TWI14G0479 Tripterygium wilfordii HOM05D005963 ORTHO05D006869 2.0e-151 540.4 667 49.6
QL12p038851 Quercus lobata HOM05D005963 ORTHO05D006869 2.6e-151 540.0 701 47.6
PGR142G0011 Punica granatum HOM05D005963 ORTHO05D006869 5.8e-151 538.9 673 49.6
FvH4_7g28640 Fragaria vesca HOM05D005963 ORTHO05D006869 9.9e-151 538.1 698 48.0
Nn6g34339 Nelumbo nucifera HOM05D005963 ORTHO05D006869 1.3e-150 537.7 650 50.2
FAN06G2356 Fragaria x ananassa HOM05D005963 ORTHO05D006869 2.9e-150 536.6 698 48.1
Eucgr.K00183 Eucalyptus grandis HOM05D005963 ORTHO05D006869 6.4e-150 535.4 637 50.4
CiPaw.03G099400 Carya illinoinensis HOM05D005963 ORTHO05D006869 8.4e-150 535.0 631 49.8
FAN03G0518 Fragaria x ananassa HOM05D005963 ORTHO05D006869 9.3e-149 531.6 694 48.0
CAN.G1257.1 Capsicum annuum HOM05D005963 ORTHO05D006869 2.7e-148 530.0 720 47.9
RcHm_v2.0_Chr1g0376121 Rosa chinensis HOM05D005963 ORTHO05D006869 2.7e-148 530.0 710 47.2
Oeu030146.1 Olea europaea HOM05D005963 ORTHO05D006869 4.6e-148 529.3 637 50.4
FAN01G2646 Fragaria x ananassa HOM05D005963 ORTHO05D006869 6.0e-148 528.9 670 48.1
Oeu030148.1 Olea europaea HOM05D005963 ORTHO05D006869 7.8e-148 528.5 637 50.2
Nitab4.5_0000124g0020 Nicotiana tabacum HOM05D005963 ORTHO05D006869 1.0e-147 528.1 638 48.4
TAR374G1343 Trochodendron aralioides HOM05D005963 ORTHO05D006869 1.0e-147 528.1 583 51.8
ECA232G0907 Erigeron canadensis HOM05D005963 ORTHO05D006869 1.7e-147 527.3 659 48.7
Manes.06G140900 Manihot esculenta HOM05D005963 ORTHO05D006869 3.9e-147 526.2 648 48.0
FAN10G3242 Fragaria x ananassa HOM05D005963 ORTHO05D006869 5.1e-147 525.8 723 46.2
Nitab4.5_0000371g0030 Nicotiana tabacum HOM05D005963 ORTHO05D006869 6.6e-147 525.4 646 48.9
Lj8C34G2 Lonicera japonica HOM05D005963 ORTHO05D006869 2.5e-146 523.5 694 46.1
Sopen03g002900 Solanum pennellii HOM05D005963 ORTHO05D006869 3.3e-146 523.1 707 47.9
VMungo0464G1720 Vigna mungo HOM05D005963 ORTHO05D006869 5.6e-146 522.3 698 46.8
Solyc03g006900.2 Solanum lycopersicum HOM05D005963 ORTHO05D006869 1.1e-144 518.1 705 46.7
Lsat_1_v5_gn_9_53261 Lactuca sativa HOM05D005963 ORTHO05D006869 3.1e-144 516.5 727 45.5
Phvul.004G124000 Phaseolus vulgaris HOM05D005963 ORTHO05D006869 2.0e-143 513.8 664 47.1
arahy.Tifrunner.gnm1.ann1.G2RQNR Arachis hypogaea HOM05D005963 ORTHO05D006869 7.6e-143 511.9 561 51.0
arahy.Tifrunner.gnm1.ann1.R4K09I Arachis hypogaea HOM05D005963 ORTHO05D006869 7.6e-143 511.9 563 50.8
Lalb_Chr19g0131211 Lupinus albus HOM05D005963 ORTHO05D006869 1.7e-142 510.8 722 44.7
Lj2g0022710 Lotus japonicus HOM05D005963 ORTHO05D006869 8.4e-142 508.4 568 50.2
HanXRQChr15g0486261 Helianthus annuus HOM05D005963 ORTHO05D006869 1.1e-141 508.1 716 45.1
Medtr0007s0220 Medicago truncatula HOM05D005963 ORTHO05D006869 2.4e-141 506.9 658 48.2
SHI13839 Sapria himalayana HOM05D005963 ORTHO05D006869 9.3e-141 505.0 725 46.2
Gorai.008G282200 Gossypium raimondii HOM05D005963 ORTHO05D006869 2.7e-140 503.4 613 48.5
CiPaw.04G064800 Carya illinoinensis HOM05D005963 ORTHO05D006869 4.6e-140 502.7 727 45.1
DCAR_018136 Daucus carota HOM05D005963 ORTHO05D006869 6.0e-140 502.3 649 45.9
Gohir.D12G263300 Gossypium hirsutum HOM05D005963 ORTHO05D006869 1.0e-139 501.5 613 48.3
Gohir.A12G262600 Gossypium hirsutum HOM05D005963 ORTHO05D006869 8.7e-139 498.4 564 50.2
Glyma.09G149700 Glycine max HOM05D005963 ORTHO05D006869 4.8e-137 492.7 668 46.4
TPR.G26590 Trifolium pratense HOM05D005963 ORTHO05D006869 6.9e-136 488.8 677 44.6
EL10Ac3g05753 Beta vulgaris HOM05D005963 ORTHO05D006869 9.9e-135 485.0 550 50.7
Psat1g106960 Pisum sativum HOM05D005963 ORTHO05D006869 1.1e-133 481.5 587 48.7
FAN03G0902 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.3e-131 474.6 548 49.8
Sabra12G0099600 Salix brachista HOM05D005963 ORTHO05D006869 1.8e-131 474.2 690 44.6
EL10Ac7g16401 Beta vulgaris HOM05D005963 ORTHO05D006869 3.1e-128 463.4 596 46.6
PSO782G2761 Papaver somniferum HOM05D005963 ORTHO05D006869 3.1e-128 463.4 668 45.7
Sed0018627 Sechium edule HOM05D005963 ORTHO05D006869 6.9e-128 462.2 667 43.9
Ah.13g067680 Amaranthus hybridus HOM05D005963 ORTHO05D006869 2.0e-127 460.7 554 48.0
PSO478G0110 Papaver somniferum HOM05D005963 ORTHO05D006869 1.4e-125 454.5 645 46.4
MELO3C006856.2 Cucumis melo HOM05D005963 ORTHO05D006869 3.5e-124 449.9 721 40.9
ClCG05G007670 Citrullus lanatus HOM05D005963 ORTHO05D006869 7.9e-124 448.7 549 46.3
vmacro22547 Vaccinium macrocarpon HOM05D005963 ORTHO05D006869 1.3e-118 431.4 541 46.2
SEGI_31852 Sequoiadendron giganteum HOM05D005963 ORTHO05D006869 4.6e-116 422.9 526 44.7
CsaV3_3G016590 Cucumis sativus L. HOM05D005963 ORTHO05D006869 6.7e-115 419.1 725 39.2
COL.COLO4_14220 Corchorus olitorius HOM05D005963 ORTHO05D006869 7.4e-114 415.6 548 46.2
Dinv35132 Davidia involucrata HOM05D005963 ORTHO05D006869 3.1e-112 410.2 532 46.1
AUR62016071 Chenopodium quinoa HOM05D005963 ORTHO05D006869 1.7e-110 404.4 611 43.2
Dinv28513 Davidia involucrata HOM05D005963 ORTHO05D006869 1.1e-109 401.7 543 44.0
AUR62021279 Chenopodium quinoa HOM05D005963 ORTHO05D006869 4.1e-104 383.3 464 48.5
Gorai.001G047400 Gossypium raimondii HOM05D005963 ORTHO05D006869 4.5e-103 379.8 707 39.5
Sc25g0000220 Simmondsia chinensis HOM05D005963 ORTHO05D006869 4.5e-103 379.8 635 40.3
Gohir.A07G040200 Gossypium hirsutum HOM05D005963 ORTHO05D006869 6.5e-94 349.4 302 59.3
Glyma.16G201100 Glycine max HOM05D005963 ORTHO05D006869 1.2e-87 328.6 484 45.0
CDE08G0260 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 6.8e-83 312.8 403 43.9
ATR0661G452 Amborella trichopoda HOM05D005963 ORTHO05D006869 2.7e-71 274.2 502 39.0
Hund04676 Selenicereus undatus HOM05D005963 ORTHO05D006869 2.7e-71 274.2 292 50.3
Gohir.D07G044301 Gossypium hirsutum HOM05D005963 ORTHO05D006869 4.4e-66 256.9 239 55.2
Atru.chr1.581 Acer truncatum HOM05D005963 ORTHO05D006869 1.3e-65 255.4 409 44.0
Cc02_g03640 Coffea canephora HOM05D005963 ORTHO05D006869 4.9e-65 253.4 239 56.5
PGSC0003DMG400007557 Solanum tuberosum HOM05D005963 ORTHO05D006869 1.6e-63 248.4 238 55.0
Atru.chr1.580 Acer truncatum HOM05D005963 ORTHO05D006869 1.3e-62 245.4 245 53.5
Ca_05417_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 1.8e-35 155.2 169 53.3
Ca_30119_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 1.8e-35 155.2 169 53.3
ATR0661G117 Amborella trichopoda HOM05D005963 ORTHO05D006869 9.9e-34 149.4 173 43.9
Aa31LG3G8240 Aethionema arabicum HOM05D005963 ORTHO05D006869 8.4e-25 119.8 96 66.7
PGSC0003DMG400007558 Solanum tuberosum HOM05D005963 ORTHO05D006869 1.5e-18 99.0 80 57.5
MBI05_g12587_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 1.5e-13 82.4 68 48.5
MBI05_g12588_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 4.3e-13 80.9 56 73.2
CBR_g38396 Chara braunii HOM05D002537 ORTHO05D002751 5.8e-10 70.5 117 30.8
Mapoly0001s0312 Marchantia polymorpha HOM05D029505 ORTHO05D006869 6.5e-09 67.0 132 33.3
CDE08G0941 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 5.5e-08 63.9 88 45.5
TWI75G0641 Tripterygium wilfordii HOM05D002537 ORTHO05D002751 1.0e-06 59.7 142 32.4
DCAR_000127 Daucus carota HOM05D002537 ORTHO05D002751 5.1e-06 57.4 116 30.2
DCAR_024631 Daucus carota HOM05D002537 ORTHO05D002751 5.1e-06 57.4 116 30.2
Mapoly0229s0008 Marchantia polymorpha HOM05D002537 ORTHO05D002751 5.1e-06 57.4 123 30.1
Zm00001eb421380 Zea mays HOM05D002537 ORTHO05D002751 5.1e-06 57.4 129 37.2


User provided reference genes

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