Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20641 Brassica carinata HOM05D007196 ORTHO05D009100 3.4e-58 228.0 109 100.0
C09p41140 Brassica napus HOM05D007196 ORTHO05D009100 3.4e-58 228.0 109 100.0
BolC9t56992H Brassica oleracea HOM05D007196 ORTHO05D009100 3.4e-58 228.0 109 100.0
A10p09580 Brassica napus HOM05D007196 ORTHO05D009100 2.7e-55 218.4 109 97.2
BraA10t43033Z Brassica rapa HOM05D007196 ORTHO05D009100 1.0e-54 216.5 109 96.3
Sp6g13940 Schrenkiella parvula HOM05D007196 ORTHO05D009100 1.0e-54 216.5 109 93.6
BcaB08g35520 Brassica carinata HOM05D007196 ORTHO05D009100 1.4e-54 216.1 109 94.5
Thhalv10015074m.g Eutrema salsugineum HOM05D007196 ORTHO05D009100 1.4e-51 206.1 110 90.0
AL8G25980 Arabidopsis lyrata HOM05D007196 ORTHO05D009100 3.4e-50 201.4 110 89.1
CARHR264580 Cardamine hirsuta HOM05D007196 ORTHO05D009100 6.5e-49 197.2 110 88.2
AT5G51720 Arabidopsis thaliana HOM05D007196 ORTHO05D009100 1.2e-47 193.0 110 87.3
Carub.0008s1174 Capsella rubella HOM05D007196 ORTHO05D009100 2.4e-43 178.7 109 81.7
THA.LOC104811505 Tarenaya hassleriana HOM05D007196 ORTHO05D009100 2.0e-37 159.1 110 76.4
Cpa.g.sc3.256 Carica papaya HOM05D007196 ORTHO05D009100 2.7e-34 148.7 112 67.9
ECA238G2893 Erigeron canadensis HOM05D007196 ORTHO05D009100 3.2e-32 141.7 108 68.5
AUR62016084 Chenopodium quinoa HOM05D007196 ORTHO05D009100 9.4e-32 140.2 81 84.0
EL10Ac3g05770 Beta vulgaris HOM05D007196 ORTHO05D009100 1.2e-31 139.8 97 71.1
AUR62021293 Chenopodium quinoa HOM05D007196 ORTHO05D009100 2.1e-31 139.0 81 82.7
CSS0025032 Camellia sinensis var. sinensis HOM05D007196 ORTHO05D009100 6.1e-31 137.5 112 65.2
TAR375G0687 Trochodendron aralioides HOM05D007196 ORTHO05D009100 6.1e-31 137.5 114 64.0
arahy.Tifrunner.gnm1.ann1.S0TT2Y Arachis hypogaea HOM05D007196 ORTHO05D009100 1.4e-30 136.3 82 81.7
CiPaw.03G098100 Carya illinoinensis HOM05D007196 ORTHO05D009100 3.0e-30 135.2 86 76.7
Cfa008239 Carpinus fangiana HOM05D007196 ORTHO05D009100 4.0e-30 134.8 78 83.3
HanXRQChr07g0206311 Helianthus annuus HOM05D007196 ORTHO05D009100 4.0e-30 134.8 104 67.3
Medtr0050s0180 Medicago truncatula HOM05D007196 ORTHO05D009100 6.8e-30 134.0 117 61.5
Psat1g109280 Pisum sativum HOM05D007196 ORTHO05D009100 6.8e-30 134.0 81 76.5
COL.COLO4_14199 Corchorus olitorius HOM05D007196 ORTHO05D009100 8.8e-30 133.7 116 60.3
Lsat_1_v5_gn_2_129760 Lactuca sativa HOM05D007196 ORTHO05D009100 8.8e-30 133.7 86 73.3
Lj2g0025497 Lotus japonicus HOM05D007196 ORTHO05D009100 8.8e-30 133.7 115 60.0
Thecc.03G163500 Theobroma cacao HOM05D007196 ORTHO05D009100 8.8e-30 133.7 121 62.8
Duzib068G1365 Durio zibethinus HOM05D007196 ORTHO05D009100 1.2e-29 133.3 119 60.5
Duzib205G1842 Durio zibethinus HOM05D007196 ORTHO05D009100 1.2e-29 133.3 117 60.7
Manes.14G032200 Manihot esculenta HOM05D007196 ORTHO05D009100 1.5e-29 132.9 109 60.6
CsaV3_5G005490 Cucumis sativus L. HOM05D007196 ORTHO05D009100 2.6e-29 132.1 79 78.5
ClCG01G005210 Citrullus lanatus HOM05D007196 ORTHO05D009100 4.4e-29 131.3 78 76.9
TPR.G27717 Trifolium pratense HOM05D007196 ORTHO05D009100 4.4e-29 131.3 80 75.0
vmacro06759 Vaccinium macrocarpon HOM05D007196 ORTHO05D009100 4.4e-29 131.3 110 67.3
Ciclev10006560m.g Citrus clementina HOM05D007196 ORTHO05D009100 5.7e-29 131.0 85 76.5
MELO3C005405.2 Cucumis melo HOM05D007196 ORTHO05D009100 5.7e-29 131.0 106 63.2
Duzib205G0862 Durio zibethinus HOM05D007196 ORTHO05D009100 5.7e-29 131.0 117 59.8
Glyma.16G203100 Glycine max HOM05D007196 ORTHO05D009100 5.7e-29 131.0 83 74.7
Glyma.09G152100 Glycine max HOM05D007196 ORTHO05D009100 7.5e-29 130.6 115 60.9
DCAR_018131 Daucus carota HOM05D007196 ORTHO05D009100 1.3e-28 129.8 107 63.6
Lalb_Chr19g0131261 Lupinus albus HOM05D007196 ORTHO05D009100 1.3e-28 129.8 83 74.7
Prupe.2G283900 Prunus persica HOM05D007196 ORTHO05D009100 1.3e-28 129.8 104 67.3
Gohir.D11G007600 Gossypium hirsutum HOM05D007196 ORTHO05D009100 1.7e-28 129.4 105 63.8
Gorai.007G009100 Gossypium raimondii HOM05D007196 ORTHO05D009100 1.7e-28 129.4 105 63.8
Os07g0467200 Oryza sativa ssp. japonica HOM05D007196 ORTHO05D009100 1.7e-28 129.4 74 78.4
Potri.015G132500 Populus trichocarpa HOM05D007196 ORTHO05D009100 1.7e-28 129.4 79 78.5
Sed0001882 Sechium edule HOM05D007196 ORTHO05D009100 2.2e-28 129.0 74 82.4
CAN.G1481.5 Capsicum annuum HOM05D007196 ORTHO05D009100 6.3e-28 127.5 79 75.9
Gohir.A11G008400 Gossypium hirsutum HOM05D007196 ORTHO05D009100 6.3e-28 127.5 105 63.8
Nitab4.5_0003984g0020 Nicotiana tabacum HOM05D007196 ORTHO05D009100 6.3e-28 127.5 80 76.2
Dinv08000 Davidia involucrata HOM05D007196 ORTHO05D009100 8.3e-28 127.1 80 76.2
Actinidia13526 Actinidia chinensis HOM05D007196 ORTHO05D009100 1.1e-27 126.7 79 77.2
Migut.F00414 Erythranthe guttata HOM05D007196 ORTHO05D009100 1.1e-27 126.7 86 69.8
MD01G1187500 Malus domestica HOM05D007196 ORTHO05D009100 1.1e-27 126.7 106 64.2
Peaxi162Scf00192g00828 Petunia axillaris HOM05D007196 ORTHO05D009100 1.1e-27 126.7 80 77.5
Rhsim03G0172900 Rhododendron simsii HOM05D007196 ORTHO05D009100 1.1e-27 126.7 85 72.9
PGSC0003DMG400031014 Solanum tuberosum HOM05D007196 ORTHO05D009100 1.4e-27 126.3 80 75.0
Potri.012G130600 Populus trichocarpa HOM05D007196 ORTHO05D009100 1.8e-27 125.9 79 75.9
Sabra12G0098300 Salix brachista HOM05D007196 ORTHO05D009100 1.8e-27 125.9 75 80.0
Atru.chr1.612 Acer truncatum HOM05D007196 ORTHO05D009100 2.4e-27 125.6 110 59.1
Cc02_g03760 Coffea canephora HOM05D007196 ORTHO05D009100 2.4e-27 125.6 80 73.8
Phvul.004G125800 Phaseolus vulgaris HOM05D007196 ORTHO05D009100 3.1e-27 125.2 88 68.2
RcHm_v2.0_Chr1g0375291 Rosa chinensis HOM05D007196 ORTHO05D009100 3.1e-27 125.2 81 76.5
CANSAT21G1841 Cannabis sativa HOM05D007196 ORTHO05D009100 4.1e-27 124.8 111 59.5
TWI14G0139 Tripterygium wilfordii HOM05D007196 ORTHO05D009100 4.1e-27 124.8 111 59.5
HPP92_007351 Vanilla planifolia HOM05D007196 ORTHO05D009100 4.1e-27 124.8 94 64.9
Eucgr.K00137 Eucalyptus grandis HOM05D007196 ORTHO05D009100 5.4e-27 124.4 112 61.6
Hma1.2p1_0488F.1_g163760 Hydrangea macrophylla HOM05D007196 ORTHO05D009100 5.4e-27 124.4 80 73.8
SalBow4G2038 Salvia bowleyana HOM05D007196 ORTHO05D009100 7.0e-27 124.0 79 72.2
Solyc03g007030.3 Solanum lycopersicum HOM05D007196 ORTHO05D009100 9.1e-27 123.6 80 72.5
FAN06G1802 Fragaria x ananassa HOM05D007196 ORTHO05D009100 1.2e-26 123.2 79 75.9
FAN06G4298 Fragaria x ananassa HOM05D007196 ORTHO05D009100 1.2e-26 123.2 79 75.9
PGR142G2119 Punica granatum HOM05D007196 ORTHO05D009100 1.2e-26 123.2 79 74.7
Sopen03g003020 Solanum pennellii HOM05D007196 ORTHO05D009100 1.6e-26 122.9 80 72.5
GSVIVG01018482001 Vitis vinifera HOM05D007196 ORTHO05D009100 2.0e-26 122.5 76 77.6
TWI23G0806 Tripterygium wilfordii HOM05D007196 ORTHO05D009100 2.7e-26 122.1 112 58.0
Zm00001eb320190 Zea mays HOM05D007196 ORTHO05D009100 2.7e-26 122.1 79 70.9
unitig_52.g17755 Utricularia gibba HOM05D007196 ORTHO05D009100 3.5e-26 121.7 79 72.2
FAN03G0205 Fragaria x ananassa HOM05D007196 ORTHO05D009100 4.5e-26 121.3 74 81.1
FAN10G3863 Fragaria x ananassa HOM05D007196 ORTHO05D009100 4.5e-26 121.3 82 74.4
FvH4_7g28320 Fragaria vesca HOM05D007196 ORTHO05D009100 7.7e-26 120.6 74 79.7
PSO478G0391 Papaver somniferum HOM05D007196 ORTHO05D009100 7.7e-26 120.6 71 78.9
Cc00_g08970 Coffea canephora HOM05D007196 ORTHO05D009100 5.0e-25 117.9 107 60.7
MBI12_g21133_MAGBIO Magnolia biondii HOM05D007196 ORTHO05D009100 5.0e-25 117.9 72 77.8
Aqoxy7G00560 Aquilegia oxysepala HOM05D007196 ORTHO05D009100 1.1e-24 116.7 72 77.8
CDE11G1107 Ceratophyllum demersum HOM05D007196 ORTHO05D009100 1.5e-24 116.3 109 55.0
QL12p039322 Quercus lobata HOM05D007196 ORTHO05D009100 1.9e-24 115.9 149 49.7
SMO367G0606 Selaginella moellendorffii HOM05D003621 ORTHO05D004259 4.2e-24 114.8 75 70.7
Mapoly0132s0038 Marchantia polymorpha HOM05D007196 ORTHO05D009100 7.2e-24 114.0 79 68.4
SEGI_24908 Sequoiadendron giganteum HOM05D007196 ORTHO05D009100 1.6e-23 112.8 62 80.6
AagrBONN_evm.TU.Sc2ySwM_117.3845 Anthoceros agrestis HOM05D007196 ORTHO05D009100 2.1e-23 112.5 62 79.0
CDE02G2935 Ceratophyllum demersum HOM05D007196 ORTHO05D009100 1.8e-22 109.4 110 49.1
AUR62023670 Chenopodium quinoa HOM05D007196 ORTHO05D001134 1.8e-22 109.4 64 81.2
Pp3c24_720 Physcomitrium patens HOM05D007196 ORTHO05D009100 3.0e-22 108.6 91 58.2
Pp3c23_14000 Physcomitrium patens HOM05D007196 ORTHO05D009100 6.8e-22 107.5 91 57.1
PSO782G2298 Papaver somniferum HOM05D007196 ORTHO05D009100 3.4e-21 105.1 64 75.0
CBR_g49669 Chara braunii HOM05D007196 ORTHO05D009100 1.3e-20 103.2 95 53.7
PGSC0003DMG400019391 Solanum tuberosum HOM05D007196 ORTHO05D009100 9.2e-19 97.1 83 60.2
CAN.G1135.2 Capsicum annuum HOM05D007196 ORTHO05D009100 1.2e-18 96.7 85 61.2
Cre01.g050550 Chlamydomonas reinhardtii HOM05D007196 ORTHO05D009100 1.7e-17 92.8 61 63.9
Haze_26518 Corylus avellana HOM05D007196 ORTHO05D009100 3.4e-13 78.6 66 53.0
Dinv28524 Davidia involucrata HOM05D007196 ORTHO05D009100 7.0e-11 70.9 52 67.3
Haze_13814 Corylus avellana HOM05D007196 ORTHO05D009100 5.0e-09 64.7 59 62.7
Cc05_g04470 Coffea canephora HOM05D007196 ORTHO05D009100 2.1e-07 59.3 28 89.3
Nn4g26452 Nelumbo nucifera HOM05D007196 ORTHO05D009100 8.0e-07 57.4 44 68.2
VMungo0464G1496 Vigna mungo HOM05D007196 ORTHO05D009100 1.4e-06 56.6 47 61.7


User provided reference genes

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