Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20644 Brassica carinata HOM05D007548 ORTHO05D009527 7.3e-149 530.8 321 100.0
C09p41110 Brassica napus HOM05D007548 ORTHO05D009527 7.3e-149 530.8 321 100.0
BolC9t56989H Brassica oleracea HOM05D007548 ORTHO05D009527 7.3e-149 530.8 321 100.0
A10p09560 Brassica napus HOM05D007548 ORTHO05D009527 1.1e-139 500.4 321 95.6
BraA10t43031Z Brassica rapa HOM05D007548 ORTHO05D009527 2.2e-137 492.7 321 94.7
BcaB08g35518 Brassica carinata HOM05D007548 ORTHO05D009527 1.3e-121 440.3 324 89.2
Thhalv10014011m.g Eutrema salsugineum HOM05D007548 ORTHO05D009527 3.7e-100 369.0 349 75.6
Sp6g13900 Schrenkiella parvula HOM05D007548 ORTHO05D009527 1.1e-99 367.5 385 69.1
AL8G25930 Arabidopsis lyrata HOM05D007548 ORTHO05D009527 4.1e-99 365.5 347 72.6
AT5G51680 Arabidopsis thaliana HOM05D007548 ORTHO05D009527 3.4e-98 362.5 347 75.2
CARHR264530 Cardamine hirsuta HOM05D007548 ORTHO05D009527 3.4e-98 362.5 347 73.2
Carub.0008s1170 Capsella rubella HOM05D007548 ORTHO05D009527 3.0e-94 349.4 348 72.7
Aa31LG3G8110 Aethionema arabicum HOM05D007548 ORTHO05D009527 2.1e-71 273.5 365 53.4
BolC2t08158H Brassica oleracea HOM05D007548 ORTHO05D009527 1.2e-55 221.1 387 53.5
A02p12160 Brassica napus HOM05D007548 ORTHO05D009527 6.1e-55 218.8 387 53.0
BraA02t06280Z Brassica rapa HOM05D007548 ORTHO05D009527 3.1e-54 216.5 365 57.3
BcaB05g23992 Brassica carinata HOM05D007548 ORTHO05D009527 6.4e-52 208.8 354 55.1
BcaC03g14581 Brassica carinata HOM05D007548 ORTHO05D009527 6.0e-50 202.2 436 47.5
THA.LOC104798720 Tarenaya hassleriana HOM05D007548 ORTHO05D009527 2.4e-35 153.7 369 43.4
Thecc.03G162900 Theobroma cacao HOM05D007548 ORTHO05D009527 4.3e-24 116.3 340 34.4
TWI39G0023 Tripterygium wilfordii HOM05D007548 ORTHO05D009527 3.6e-23 113.2 345 35.7
Duzib068G0425 Durio zibethinus HOM05D007548 ORTHO05D009527 1.4e-22 111.3 347 35.7
Ciclev10007148m.g Citrus clementina HOM05D007548 ORTHO05D009527 2.6e-21 107.1 307 38.4
Haze_13820 Corylus avellana HOM05D007548 ORTHO05D009527 5.8e-21 105.9 357 35.6
DCAR_018129 Daucus carota HOM05D007548 ORTHO05D009527 1.7e-20 104.4 334 32.6
CiPaw.03G097400 Carya illinoinensis HOM05D007548 ORTHO05D009527 2.9e-20 103.6 309 35.3
Potri.015G132000 Populus trichocarpa HOM05D007548 ORTHO05D009527 1.1e-19 101.7 326 33.1
Atru.chr1.619 Acer truncatum HOM05D007548 ORTHO05D009527 2.4e-19 100.5 315 35.2
Gorai.008G283300 Gossypium raimondii HOM05D007548 ORTHO05D009527 3.2e-19 100.1 353 33.7
Gohir.D12G264100 Gossypium hirsutum HOM05D007548 ORTHO05D009527 5.4e-19 99.4 359 29.8
FvH4_7g28270 Fragaria vesca HOM05D007548 ORTHO05D009527 1.2e-18 98.2 331 34.1
FAN06G3028 Fragaria x ananassa HOM05D007548 ORTHO05D009527 1.2e-18 98.2 331 34.1
FAN06G3476 Fragaria x ananassa HOM05D007548 ORTHO05D009527 1.2e-18 98.2 331 34.1
Cfa008236 Carpinus fangiana HOM05D007548 ORTHO05D009527 7.8e-18 95.5 351 35.3
FAN03G1824 Fragaria x ananassa HOM05D007548 ORTHO05D009527 7.8e-18 95.5 319 33.5
Lj8A35G80 Lonicera japonica HOM05D007548 ORTHO05D009527 7.8e-18 95.5 304 34.9
RcHm_v2.0_Chr1g0375221 Rosa chinensis HOM05D007548 ORTHO05D009527 1.0e-17 95.1 318 34.6
Gohir.A12G263800 Gossypium hirsutum HOM05D007548 ORTHO05D009527 1.3e-17 94.7 343 32.9
Prupe.2G283000 Prunus persica HOM05D007548 ORTHO05D009527 1.3e-17 94.7 337 35.6
Actinidia13550 Actinidia chinensis HOM05D007548 ORTHO05D009527 3.0e-17 93.6 340 33.5
FAN03G2953 Fragaria x ananassa HOM05D007548 ORTHO05D009527 1.1e-16 91.7 296 34.5
CANSAT80G1542 Cannabis sativa HOM05D007548 ORTHO05D009527 4.3e-16 89.7 304 33.6
Manes.06G138600 Manihot esculenta HOM05D007548 ORTHO05D009527 4.3e-16 89.7 339 34.2
FAN01G2764 Fragaria x ananassa HOM05D007548 ORTHO05D009527 5.6e-16 89.4 327 33.6
Cpa.g.sc13.212 Carica papaya HOM05D007548 ORTHO05D009527 7.3e-16 89.0 330 33.9
Eucgr.K00142 Eucalyptus grandis HOM05D007548 ORTHO05D009527 1.6e-15 87.8 303 33.0
Actinidia25043 Actinidia chinensis HOM05D007548 ORTHO05D009527 6.2e-15 85.9 331 35.3
Peaxi162Scf00192g00096 Petunia axillaris HOM05D007548 ORTHO05D009527 1.4e-14 84.7 344 30.8
Cc02_g03840 Coffea canephora HOM05D007548 ORTHO05D009527 1.8e-14 84.3 327 32.1
Oeu021733.1 Olea europaea HOM05D007548 ORTHO05D009527 3.1e-14 83.6 327 32.7
Oeu021734.1 Olea europaea HOM05D007548 ORTHO05D009527 1.2e-13 81.6 327 32.4
Glyma.10G242400 Glycine max HOM05D007548 ORTHO05D009527 1.3e-12 78.2 324 33.3
MSTRG.27166 Avicennia marina HOM05D007548 ORTHO05D009527 4.9e-12 76.3 363 33.6
PGR142G1046 Punica granatum HOM05D007548 ORTHO05D009527 8.4e-12 75.5 377 27.3
GSVIVG01018495001 Vitis vinifera HOM05D007548 ORTHO05D009527 1.4e-11 74.7 129 44.2
arahy.Tifrunner.gnm1.ann1.J4U887 Arachis hypogaea HOM05D001870 ORTHO05D001797 3.2e-11 73.6 317 30.9
TAR636G2044 Trochodendron aralioides HOM05D007548 ORTHO05D009527 4.2e-11 73.2 302 31.1
Nitab4.5_0008495g0030 Nicotiana tabacum HOM05D007548 ORTHO05D009527 7.1e-11 72.4 319 32.6
Nitab4.5_0000072g0300 Nicotiana tabacum HOM05D007548 ORTHO05D009527 9.3e-11 72.0 351 31.1
Glyma.20G151700 Glycine max HOM05D007548 ORTHO05D009527 1.6e-10 71.2 334 32.3
arahy.Tifrunner.gnm1.ann1.WA56KQ Arachis hypogaea HOM05D001870 ORTHO05D001797 2.1e-10 70.9 322 30.7
COL.COLO4_14190 Corchorus olitorius HOM05D007548 ORTHO05D009527 3.5e-10 70.1 228 36.0
Sopen03g003070 Solanum pennellii HOM05D007548 ORTHO05D009527 1.0e-09 68.6 316 31.6
Solyc03g007080.4 Solanum lycopersicum HOM05D007548 ORTHO05D009527 1.3e-09 68.2 111 41.4
VMungo0720G2396 Vigna mungo HOM05D007548 ORTHO05D009527 1.8e-09 67.8 301 32.2
Nn4g26440 Nelumbo nucifera HOM05D007548 ORTHO05D009527 2.3e-09 67.4 341 28.2
Sc25g0000160 Simmondsia chinensis HOM05D007548 ORTHO05D009527 1.9e-08 64.3 313 34.5
Medtr1g102510 Medicago truncatula HOM05D007548 ORTHO05D009527 2.5e-08 63.9 325 30.8
Nn1g01184 Nelumbo nucifera HOM05D007548 ORTHO05D009527 2.5e-08 63.9 297 29.0
SalBow4G1498 Salvia bowleyana HOM05D007548 ORTHO05D009527 4.3e-08 63.2 328 33.2
TPR.G26079 Trifolium pratense HOM05D007548 ORTHO05D009527 4.3e-08 63.2 142 40.1
Migut.F00422 Erythranthe guttata HOM05D007548 ORTHO05D009527 9.6e-08 62.0 324 30.2
Psat6g202320 Pisum sativum HOM05D007548 ORTHO05D009527 1.6e-07 61.2 322 30.1
PGSC0003DMG400031012 Solanum tuberosum HOM05D007548 ORTHO05D009527 1.6e-07 61.2 360 30.3
HanXRQChr05g0141371 Helianthus annuus HOM05D007548 ORTHO05D009527 2.1e-07 60.8 305 28.2
arahy.Tifrunner.gnm1.ann1.Z61DE3 Arachis hypogaea HOM05D007548 ORTHO05D009527 2.8e-07 60.5 136 37.5
Lj5g0018367 Lotus japonicus HOM05D007548 ORTHO05D009527 2.8e-07 60.5 333 29.4
Phvul.007G063100 Phaseolus vulgaris HOM05D007548 ORTHO05D009527 2.8e-07 60.5 337 29.7
EL10Ac3g05788 Beta vulgaris HOM05D007548 ORTHO05D009527 4.8e-07 59.7 320 29.4
Manes.14G032600 Manihot esculenta HOM05D007548 ORTHO05D009527 4.8e-07 59.7 302 28.5
Lsat_1_v5_gn_8_8041 Lactuca sativa HOM05D007548 ORTHO05D009527 8.1e-07 58.9 327 28.7
Dinv07997 Davidia involucrata HOM05D007548 ORTHO05D009527 1.1e-06 58.5 218 42.7
SalBow4G2379 Salvia bowleyana HOM05D007548 ORTHO05D009527 1.8e-06 57.8 329 32.5


User provided reference genes

Program Settings