Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p40870 Brassica napus HOM05D003996 ORTHO05D004665 6.8e-50 200.3 96 100.0
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 9.8e-33 143.3 69 97.1
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 9.8e-33 143.3 69 97.1
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 2.2e-32 142.1 69 95.7
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 6.4e-32 140.6 69 95.7
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 1.9e-31 139.0 69 94.2
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 4.1e-31 137.9 69 92.8
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 7.8e-30 133.7 69 89.9
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 7.8e-30 133.7 69 88.4
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 1.7e-29 132.5 69 88.4
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 8.6e-29 130.2 66 89.4
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 1.9e-28 129.0 65 90.8
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 7.3e-28 127.1 66 89.4
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 3.6e-27 124.8 69 84.1
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 8.9e-26 120.2 88 69.3
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 1.3e-24 116.3 69 73.9
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 1.3e-24 116.3 69 73.9
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 1.3e-24 116.3 69 73.9
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 1.3e-24 116.3 69 73.9
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 1.3e-24 116.3 69 73.9
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 5.4e-23 110.9 70 71.4
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.2e-22 109.8 70 72.9
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 1.6e-22 109.4 70 72.9
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 4.6e-22 107.8 70 70.0
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 4.6e-22 107.8 70 71.4
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 6.0e-22 107.5 70 71.4
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 7.8e-22 107.1 70 68.6
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 7.8e-22 107.1 70 70.0
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 1.7e-21 105.9 91 58.2
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 1.7e-21 105.9 70 71.4
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 2.3e-21 105.5 70 72.9
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 3.0e-21 105.1 70 70.0
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 3.0e-21 105.1 71 66.2
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 3.9e-21 104.8 62 79.0
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 5.1e-21 104.4 70 71.4
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 8.6e-21 103.6 70 68.6
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 8.6e-21 103.6 70 70.0
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 1.1e-20 103.2 70 71.4
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 1.1e-20 103.2 70 70.0
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 1.1e-20 103.2 70 72.9
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 1.1e-20 103.2 70 67.1
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 1.5e-20 102.8 70 68.6
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.9e-20 102.4 69 68.1
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.9e-20 102.4 69 68.1
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.9e-20 102.4 69 68.1
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 1.9e-20 102.4 70 71.4
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 2.5e-20 102.1 70 65.7
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 3.3e-20 101.7 70 70.0
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 3.3e-20 101.7 70 67.1
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 7.3e-20 100.5 78 62.8
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 9.5e-20 100.1 70 68.6
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 1.2e-19 99.8 70 67.1
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 1.2e-19 99.8 70 67.1
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 1.2e-19 99.8 70 68.6
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 1.2e-19 99.8 63 71.4
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 1.6e-19 99.4 87 59.8
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 1.6e-19 99.4 69 66.7
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 1.6e-19 99.4 69 71.0
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 1.6e-19 99.4 70 67.1
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 2.1e-19 99.0 66 71.2
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 2.1e-19 99.0 70 67.1
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 2.1e-19 99.0 70 68.6
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 2.8e-19 98.6 70 67.1
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 2.8e-19 98.6 70 67.1
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 2.8e-19 98.6 62 72.6
BraA03t11105Z Brassica rapa HOM05D003996 ORTHO05D004665 3.6e-19 98.2 51 90.2
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 3.6e-19 98.2 66 68.2
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 3.6e-19 98.2 70 65.7
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 4.7e-19 97.8 69 68.1
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 4.7e-19 97.8 70 68.6
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 6.2e-19 97.4 70 67.1
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 1.4e-18 96.3 70 64.3
CiPaw.04G110700 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.4e-18 96.3 66 68.2
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 2.3e-18 95.5 70 65.7
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 2.3e-18 95.5 61 75.4
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 3.1e-18 95.1 63 71.4
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 3.1e-18 95.1 63 71.4
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 3.1e-18 95.1 63 71.4
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 4.0e-18 94.7 65 64.6
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 6.8e-18 94.0 70 65.7
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 8.9e-18 93.6 70 65.7
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 8.9e-18 93.6 70 64.3
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 8.9e-18 93.6 70 64.3
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.2e-17 93.2 68 66.2
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 1.5e-17 92.8 70 65.7
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 1.5e-17 92.8 63 73.0
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 1.5e-17 92.8 70 64.3
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 2.0e-17 92.4 71 64.8
Actinidia03596 Actinidia chinensis HOM05D003996 ORTHO05D004665 3.4e-17 91.7 71 63.4
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 3.4e-17 91.7 61 68.9
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 3.4e-17 91.7 70 64.3
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 3.4e-17 91.7 70 64.3
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 7.6e-17 90.5 71 63.4
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 7.6e-17 90.5 71 63.4
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 1.3e-16 89.7 71 63.4
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 1.3e-16 89.7 70 62.9
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 1.7e-16 89.4 70 60.0
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 2.9e-16 88.6 66 65.2
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 3.7e-16 88.2 63 68.3
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 3.7e-16 88.2 69 63.8
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 4.9e-16 87.8 69 62.3
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 6.4e-16 87.4 66 63.6
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 2.4e-15 85.5 78 56.4
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 4.1e-15 84.7 60 68.3
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 4.1e-15 84.7 60 66.7
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 4.1e-15 84.7 65 61.5
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 1.6e-14 82.8 55 72.7
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 2.1e-14 82.4 58 67.2
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 3.5e-14 81.6 77 55.8
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 7.8e-14 80.5 60 61.7
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 1.3e-13 79.7 51 76.5
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 1.7e-13 79.3 51 72.5
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 3.0e-13 78.6 51 72.5
HanXRQChr10g0306531 Helianthus annuus HOM05D003996 ORTHO05D004665 8.6e-13 77.0 79 53.2
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 2.5e-12 75.5 55 61.8
AUR62040130 Chenopodium quinoa HOM05D003996 ORTHO05D004665 3.3e-12 75.1 59 66.1
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 9.6e-12 73.6 75 54.7
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 1.6e-11 72.8 55 67.3
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 2.1e-11 72.4 51 68.6
BcaNung06410 Brassica carinata HOM05D003996 ORTHO05D004665 1.1e-10 70.1 47 80.9
Sabra02G0172000 Salix brachista HOM05D003996 ORTHO05D004665 1.1e-10 70.1 48 72.9
SGA_v2.0_scaffold70G23382 Striga asiatica HOM05D003996 ORTHO05D004665 1.4e-10 69.7 51 68.6
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 5.2e-10 67.8 51 64.7
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 6.8e-10 67.4 61 54.1
Lsat_1_v5_gn_9_105800 Lactuca sativa HOM05D003996 ORTHO05D004665 8.9e-10 67.0 51 64.7
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 8.9e-10 67.0 90 44.4
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 1.2e-09 66.6 51 62.7
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 1.5e-09 66.2 47 63.8
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 5.8e-09 64.3 62 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1061 Anthoceros agrestis HOM05D003996 ORTHO05D004665 7.6e-09 63.9 77 44.2
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 1.3e-08 63.2 48 66.7
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 2.2e-08 62.4 60 51.7
Os05g0597400 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 2.9e-08 62.0 54 50.0
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 3.8e-08 61.6 62 46.8
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 4.9e-08 61.2 62 53.2
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 6.4e-08 60.8 46 63.0
unitig_26.g9925 Utricularia gibba HOM05D003996 ORTHO05D004665 8.4e-08 60.5 47 61.7
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.9e-07 59.3 66 47.0
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.9e-07 59.3 66 47.0
Hund18404 Selenicereus undatus HOM05D003996 ORTHO05D004665 5.4e-07 57.8 62 50.0
Sc05g0002040 Simmondsia chinensis HOM05D003996 ORTHO05D004665 9.3e-07 57.0 62 46.8
CBR_g29855 Chara braunii HOM05D003996 ORTHO05D004665 1.2e-06 56.6 84 39.3


User provided reference genes

Program Settings