Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BNapus_Darmor_BZH_scaffold_253p00160 Brassica napus HOM05D001033 ORTHO05D004888 5.2e-104 380.9 178 100.0
BNapus_Darmor_BZH_scaffold_287p00080 Brassica napus HOM05D001033 ORTHO05D004888 5.2e-104 380.9 178 100.0
C02p43470 Brassica napus HOM05D001033 ORTHO05D004888 5.2e-104 380.9 178 100.0
C09p40480 Brassica napus HOM05D001033 ORTHO05D004888 5.2e-104 380.9 178 100.0
A06p23250 Brassica napus HOM05D001033 ORTHO05D004888 7.8e-100 367.1 178 96.6
BolSC46t61041H Brassica oleracea HOM05D001033 ORTHO05D004888 2.1e-97 359.0 168 98.8
BolSC47t61103H Brassica oleracea HOM05D001033 ORTHO05D004888 2.1e-97 359.0 168 98.8
BolSC45t60947H Brassica oleracea HOM05D001033 ORTHO05D004888 3.6e-97 358.2 166 100.0
ATCG00420 Arabidopsis thaliana HOM05D001033 ORTHO05D004888 4.1e-93 344.7 159 100.0
BraSC25t45841Z Brassica rapa HOM05D001033 ORTHO05D004888 4.1e-93 344.7 159 100.0
BraSC25t45874Z Brassica rapa HOM05D001033 ORTHO05D004888 4.1e-93 344.7 159 100.0
BraSC58t46413Z Brassica rapa HOM05D001033 ORTHO05D004888 4.1e-93 344.7 159 100.0
BraSC58t46484Z Brassica rapa HOM05D001033 ORTHO05D004888 4.1e-93 344.7 159 100.0
AL2G21460 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 4.6e-92 341.3 159 98.7
BolSC45t60865H Brassica oleracea HOM05D001033 ORTHO05D004888 4.6e-92 341.3 159 99.4
BolSC29t60582H Brassica oleracea HOM05D001033 ORTHO05D004888 1.3e-91 339.7 159 98.7
Nn021s41548 Nelumbo nucifera HOM05D001033 ORTHO05D004888 1.6e-89 332.8 180 86.1
CARHR282040 Cardamine hirsuta HOM05D001033 ORTHO05D004888 3.6e-89 331.6 154 99.4
EL10As12g24022 Beta vulgaris HOM05D001033 ORTHO05D004888 7.5e-87 323.9 167 89.2
EL10As1g23049 Beta vulgaris HOM05D001033 ORTHO05D004888 7.5e-87 323.9 167 89.2
Gohir.1Z049399 Gossypium hirsutum HOM05D001033 ORTHO05D004888 3.7e-86 321.6 159 92.5
Gohir.A09G102100 Gossypium hirsutum HOM05D001033 ORTHO05D004888 3.7e-86 321.6 159 92.5
Ah.10g027550 Amaranthus hybridus HOM05D001033 ORTHO05D004888 4.9e-86 321.2 159 92.5
COL.COLO4_03102 Corchorus olitorius HOM05D001033 ORTHO05D004888 1.1e-85 320.1 159 91.8
PGR111G0105 Punica granatum HOM05D001033 ORTHO05D004888 1.9e-85 319.3 159 91.8
Migut.D01427 Erythranthe guttata HOM05D001033 ORTHO05D004888 3.2e-85 318.5 159 90.6
RcHm_v2.0_CPg0502181 Rosa chinensis HOM05D001033 ORTHO05D004888 4.1e-85 318.2 159 91.2
Hma1.2p1_2223F.1_g317410 Hydrangea macrophylla HOM05D001033 ORTHO05D004888 9.2e-85 317.0 159 90.6
DCAR_032487 Daucus carota HOM05D001033 ORTHO05D004888 1.6e-84 316.2 159 89.3
Gohir.D03G073392 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.0e-84 315.8 159 91.2
PSO548G0080 Papaver somniferum HOM05D001033 ORTHO05D004888 2.0e-84 315.8 159 89.9
Peaxi162Scf00334g00124 Petunia axillaris HOM05D001033 ORTHO05D004888 2.7e-84 315.5 159 90.6
unitig_91.g26504 Utricularia gibba HOM05D001033 ORTHO05D004888 2.7e-84 315.5 159 89.3
LjContig00318g0025596 Lotus japonicus HOM05D001033 ORTHO05D004888 3.5e-84 315.1 161 88.2
SalBow1G1376 Salvia bowleyana HOM05D001033 ORTHO05D004888 3.5e-84 315.1 159 89.3
Medtr4g035040 Medicago truncatula HOM05D001033 ORTHO05D004888 4.6e-84 314.7 159 89.3
Medtr7g021800 Medicago truncatula HOM05D001033 ORTHO05D004888 4.6e-84 314.7 159 89.3
CAN.G219.25 Capsicum annuum HOM05D001033 ORTHO05D004888 7.8e-84 313.9 159 89.9
QL93p0270_0002 Quercus lobata HOM05D001033 ORTHO05D004888 1.3e-83 313.2 158 90.5
VMungo0498G0002 Vigna mungo HOM05D001033 ORTHO05D004888 1.3e-83 313.2 159 87.4
HanXRQChr00c0345g0573891 Helianthus annuus HOM05D001033 ORTHO05D004888 1.7e-83 312.8 159 89.3
HanXRQChr00c0702g0576871 Helianthus annuus HOM05D001033 ORTHO05D004888 1.7e-83 312.8 159 89.3
HanXRQChr02g0044951 Helianthus annuus HOM05D001033 ORTHO05D004888 1.7e-83 312.8 159 89.3
HanXRQChr07g0201011 Helianthus annuus HOM05D001033 ORTHO05D004888 1.7e-83 312.8 159 89.3
HanXRQChr08g0210301 Helianthus annuus HOM05D001033 ORTHO05D004888 1.7e-83 312.8 159 89.3
HanXRQChr10g0283491 Helianthus annuus HOM05D001033 ORTHO05D004888 1.7e-83 312.8 159 89.3
HanXRQChr10g0289211 Helianthus annuus HOM05D001033 ORTHO05D004888 1.7e-83 312.8 159 89.3
HanXRQChr10g0303781 Helianthus annuus HOM05D001033 ORTHO05D004888 1.7e-83 312.8 159 89.3
HanXRQChr11g0326761 Helianthus annuus HOM05D001033 ORTHO05D004888 1.7e-83 312.8 159 89.3
HanXRQCPg0579971 Helianthus annuus HOM05D001033 ORTHO05D004888 1.7e-83 312.8 159 89.3
Potri.013G163200 Populus trichocarpa HOM05D001033 ORTHO05D004888 1.7e-83 312.8 160 89.4
Solyc00g500061.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 3.9e-83 311.6 159 89.3
Phvul.011G056548 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 6.6e-83 310.8 159 86.8
HanXRQChr10g0285321 Helianthus annuus HOM05D001033 ORTHO05D004888 1.5e-82 309.7 159 88.7
Lj4g0025955 Lotus japonicus HOM05D001033 ORTHO05D004888 1.5e-82 309.7 161 87.6
HanXRQChr02g0041501 Helianthus annuus HOM05D001033 ORTHO05D004888 1.9e-82 309.3 159 88.7
Lsat_1_v5_gn_3_99221 Lactuca sativa HOM05D001033 ORTHO05D004888 3.3e-82 308.5 157 89.2
Lsat_1_v5_gn_3_99300 Lactuca sativa HOM05D001033 ORTHO05D004888 3.3e-82 308.5 157 89.2
Lsat_1_v5_gn_4_40440 Lactuca sativa HOM05D001033 ORTHO05D004888 3.3e-82 308.5 157 89.2
AL2G20710 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 1.2e-81 306.6 159 91.2
TWI36G0295 Tripterygium wilfordii HOM05D001033 ORTHO05D004888 1.2e-81 306.6 163 86.5
Eucgr.A02747 Eucalyptus grandis HOM05D001033 ORTHO05D004888 1.6e-81 306.2 162 85.8
Lalb_Chr07g0192281 Lupinus albus HOM05D001033 ORTHO05D004888 3.6e-81 305.1 159 86.8
Lalb_Chr20g0115661 Lupinus albus HOM05D001033 ORTHO05D004888 8.1e-81 303.9 159 86.2
CAN.G1183.6 Capsicum annuum HOM05D001033 ORTHO05D004888 1.2e-79 300.1 159 85.5
BolSC46t60994H Brassica oleracea HOM05D001033 ORTHO05D004888 1.5e-79 299.7 168 85.7
HanXRQChr15g0480701 Helianthus annuus HOM05D001033 ORTHO05D004888 1.5e-79 299.7 178 79.2
BraA06t25427Z Brassica rapa HOM05D001033 ORTHO05D004888 2.0e-79 299.3 149 94.0
Sc19g0006000 Simmondsia chinensis HOM05D001033 ORTHO05D004888 2.0e-79 299.3 157 88.5
CAN.G170.11 Capsicum annuum HOM05D001033 ORTHO05D004888 3.4e-79 298.5 159 84.9
Medtr0002s0630 Medicago truncatula HOM05D001033 ORTHO05D004888 7.5e-79 297.4 165 82.4
CSS0012650 Camellia sinensis var. sinensis HOM05D001033 ORTHO05D004888 4.1e-77 291.6 159 85.5
Gorai.001G177200 Gossypium raimondii HOM05D001033 ORTHO05D004888 2.7e-76 288.9 148 90.5
Ah.09g227310 Amaranthus hybridus HOM05D001033 ORTHO05D004888 1.3e-75 286.6 142 92.3
Sed0011576 Sechium edule HOM05D001033 ORTHO05D004888 2.3e-75 285.8 144 89.6
Sed0015951 Sechium edule HOM05D000680 ORTHO05D000738 2.3e-75 285.8 144 89.6
Sed0016230 Sechium edule HOM05D001033 ORTHO05D004888 2.3e-75 285.8 144 89.6
Sed0001763 Sechium edule HOM05D001033 ORTHO05D004888 1.9e-74 282.7 144 88.2
Thhalv10010993m.g Eutrema salsugineum HOM05D001033 ORTHO05D004888 3.3e-74 282.0 159 84.9
BolC9t55818H Brassica oleracea HOM05D001033 ORTHO05D004888 1.8e-72 276.2 163 82.2
ATR0303G003 Amborella trichopoda HOM05D001033 ORTHO05D004888 4.0e-72 275.0 139 89.9
CAN.G91.9 Capsicum annuum HOM05D001033 ORTHO05D004888 4.0e-72 275.0 159 79.2
Gohir.D07G155032 Gossypium hirsutum HOM05D001033 ORTHO05D004888 3.4e-71 271.9 139 88.5
SEGI_35798 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.3e-70 270.0 160 78.1
Gohir.D01G102242 Gossypium hirsutum HOM05D001033 ORTHO05D004888 3.2e-69 265.4 159 79.9
Sed0007524 Sechium edule HOM05D000680 ORTHO05D000738 3.0e-67 258.8 144 84.0
Solyc00g500142.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 3.9e-67 258.5 134 88.8
Gohir.D07G099350 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.4e-64 250.0 134 85.8
Nn071s42392 Nelumbo nucifera HOM05D001033 ORTHO05D004888 5.4e-61 238.0 151 76.2
FAN19G1182 Fragaria x ananassa HOM05D001033 ORTHO05D004888 2.7e-60 235.7 159 71.7
C02p28640 Brassica napus HOM05D001033 ORTHO05D004888 2.5e-58 229.2 107 97.2
BolC2t08910H Brassica oleracea HOM05D001033 ORTHO05D004888 2.5e-58 229.2 107 97.2
Nitab4.5_0001841g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 3.3e-58 228.8 132 79.5
EL10As5g23626 Beta vulgaris HOM05D001033 ORTHO05D004888 4.3e-58 228.4 117 90.6
Gorai.005G187900 Gossypium raimondii HOM05D001033 ORTHO05D004888 2.4e-56 222.6 139 74.1
Lalb_Chr07g0192231 Lupinus albus HOM05D001033 ORTHO05D004888 5.8e-55 218.0 135 75.6
EL10Ac9g20715 Beta vulgaris HOM05D001033 ORTHO05D004888 1.7e-54 216.5 136 77.2
BolC7t41665H Brassica oleracea HOM05D001033 ORTHO05D004888 4.2e-53 211.8 110 91.8
vmacro22414 Vaccinium macrocarpon HOM05D001033 ORTHO05D004888 4.6e-52 208.4 105 92.4
EL10As15g24143 Beta vulgaris HOM05D001033 ORTHO05D004888 6.0e-52 208.0 157 67.5
Gorai.001G107100 Gossypium raimondii HOM05D001033 ORTHO05D004888 1.0e-51 207.2 134 75.4
Nitab4.5_0001761g0190 Nicotiana tabacum HOM05D001033 ORTHO05D004888 3.9e-51 205.3 112 83.9
SMO086G0027 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 6.7e-51 204.5 160 63.1
SMO086G0049 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 6.7e-51 204.5 160 63.1
SMO233G0001 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 6.7e-51 204.5 160 63.1
Duzib192G0593 Durio zibethinus HOM05D001033 ORTHO05D004888 1.5e-50 203.4 109 86.2
Lj2C1237T30 Lonicera japonica HOM05D001033 ORTHO05D004888 9.6e-50 200.7 100 90.0
Lj2C1239T58 Lonicera japonica HOM05D001033 ORTHO05D004888 9.6e-50 200.7 100 90.0
Lj2C1239T8 Lonicera japonica HOM05D001033 ORTHO05D004888 9.6e-50 200.7 100 90.0
Gohir.A09G102850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 4.8e-49 198.4 101 88.1
MBI06_g39081_MAGBIO Magnolia biondii HOM05D001033 ORTHO05D004888 5.8e-47 191.4 105 82.9
SGA_v2.0_scaffold781G53594 Striga asiatica HOM05D001033 ORTHO05D004888 7.6e-47 191.0 166 62.0
Lsat_1_v5_gn_2_5601 Lactuca sativa HOM05D001033 ORTHO05D004888 2.2e-46 189.5 101 85.1
PSO302G0237 Papaver somniferum HOM05D001033 ORTHO05D004888 2.2e-46 189.5 100 85.0
Migut.D01354 Erythranthe guttata HOM05D001033 ORTHO05D004888 3.8e-46 188.7 112 79.5
BolSC29t60459H Brassica oleracea HOM05D001033 ORTHO05D004888 1.4e-45 186.8 89 97.8
Gorai.009G225200 Gossypium raimondii HOM05D001033 ORTHO05D004888 3.2e-45 185.7 135 71.1
Prupe.1G270900 Prunus persica HOM05D001033 ORTHO05D004888 5.5e-45 184.9 95 89.5
arahy.Tifrunner.gnm1.ann1.XVSZ20 Arachis hypogaea HOM05D001033 ORTHO05D004888 4.6e-44 181.8 115 73.0
Nitab4.5_0005412g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 1.8e-43 179.9 111 74.8
Gohir.D05G218250 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.3e-43 179.5 135 67.4
Nn1g03019 Nelumbo nucifera HOM05D001033 ORTHO05D004888 1.3e-41 173.7 150 66.0
SEGI_19633 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 2.8e-41 172.6 109 74.3
PGSC0003DMG400002651 Solanum tuberosum HOM05D001033 ORTHO05D004888 8.2e-41 171.0 92 85.9
Oeu062837.1 Olea europaea HOM05D001033 ORTHO05D004888 1.8e-40 169.9 100 81.0
arahy.Tifrunner.gnm1.ann1.GNV4IL Arachis hypogaea HOM05D001033 ORTHO05D004888 4.5e-39 165.2 90 81.1
DCAR_022590 Daucus carota HOM05D013260 ORTHO05D004888 1.3e-38 163.7 84 88.1
arahy.Tifrunner.gnm1.ann1.WN69VX Arachis hypogaea HOM05D001033 ORTHO05D004888 2.2e-38 162.9 83 90.4
Peaxi162Scf00110g00002 Petunia axillaris HOM05D001033 ORTHO05D004888 2.9e-38 162.5 83 90.4
CAN.G386.17 Capsicum annuum HOM05D000388 ORTHO05D004888 8.4e-38 161.0 83 89.2
MELO3C029536.2 Cucumis melo HOM05D001033 ORTHO05D004888 1.1e-37 160.6 83 88.0
Haze_27536 Corylus avellana HOM05D001033 ORTHO05D004888 9.3e-37 157.5 83 86.7
unitig_87.g27944 Utricularia gibba HOM05D000388 ORTHO05D004888 1.6e-36 156.8 104 69.2
EL10Ac4g08633 Beta vulgaris HOM05D001033 ORTHO05D004888 3.0e-35 152.5 82 86.6
PGSC0003DMG400019224 Solanum tuberosum HOM05D001033 ORTHO05D004888 3.3e-34 149.1 87 79.3
CAN.G100.48 Capsicum annuum HOM05D001033 ORTHO05D004888 1.8e-32 143.3 78 82.1
RcHm_v2.0_Chr7g0209391 Rosa chinensis HOM05D001033 ORTHO05D004888 3.1e-32 142.5 72 91.7
SEGI_38193 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 2.6e-31 139.4 85 77.6
Nitab4.5_0011099g0060 Nicotiana tabacum HOM05D001033 ORTHO05D004888 3.4e-31 139.0 78 82.1
SEGI_08348 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 3.4e-31 139.0 92 71.7
SEGI_20198 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.7e-30 136.7 84 76.2
Lalb_Chr03g0039371 Lupinus albus HOM05D001033 ORTHO05D004888 3.8e-30 135.6 68 91.2
Sed0002731 Sechium edule HOM05D001033 ORTHO05D004888 8.5e-30 134.4 124 56.5
HanXRQChr09g0274591 Helianthus annuus HOM05D001033 ORTHO05D004888 2.7e-28 129.4 65 89.2
Gohir.A10G200850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 4.6e-28 128.6 68 86.8
Nn055s41942 Nelumbo nucifera HOM05D001033 ORTHO05D004888 8.2e-25 117.9 57 93.0
BolSC35t60639H Brassica oleracea HOM05D001033 ORTHO05D004888 1.2e-23 114.0 53 98.1
HanXRQChr17g0559251 Helianthus annuus HOM05D001033 ORTHO05D004888 1.2e-23 114.0 59 86.4
ClCG07G012530 Citrullus lanatus HOM05D001033 ORTHO05D004888 2.2e-22 109.8 55 87.3
TAR633G0438 Trochodendron aralioides HOM05D001033 ORTHO05D004888 1.9e-21 106.7 58 81.0
Solyc01g017420.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.5e-21 106.3 69 69.6
TPR.G37622 Trifolium pratense HOM05D001033 ORTHO05D004888 9.4e-21 104.4 50 94.0
Lalb_Chr03g0030861 Lupinus albus HOM05D001033 ORTHO05D004888 1.2e-20 104.0 54 85.2
Solyc01g056470.1 Solanum lycopersicum HOM05D000890 ORTHO05D004888 4.7e-20 102.1 99 53.5
C09p29570 Brassica napus HOM05D001033 ORTHO05D004888 5.1e-19 98.6 43 100.0
Lalb_Chr23g0274161 Lupinus albus HOM05D001033 ORTHO05D004888 5.7e-18 95.1 53 77.4
Phvul.005G068600 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 2.8e-17 92.8 86 50.0
ClCG00G002680 Citrullus lanatus HOM05D001033 ORTHO05D004888 2.2e-14 83.2 41 87.8
EL10Ac5g11368 Beta vulgaris HOM05D001033 ORTHO05D004888 1.4e-13 80.5 48 81.2
TAR338G0003 Trochodendron aralioides HOM05D001033 ORTHO05D004888 8.0e-12 74.7 39 84.6
MELO3C034226.2 Cucumis melo HOM05D001033 ORTHO05D004888 5.7e-10 68.6 53 62.3
AUR62014217 Chenopodium quinoa HOM05D001033 ORTHO05D002045 2.4e-08 63.2 32 87.5
Lalb_Chr03g0030871 Lupinus albus HOM05D001033 ORTHO05D004888 1.2e-07 60.8 68 44.1
Cre07.g327400 Chlamydomonas reinhardtii HOM05D001560 ORTHO05D004675 2.0e-07 60.1 91 31.9
Haze_26224 Corylus avellana HOM05D001560 ORTHO05D004675 7.7e-07 58.2 88 31.8
Nitab4.5_0007578g0070 Nicotiana tabacum HOM05D012508 ORTHO05D011743 7.7e-07 58.2 60 53.3
BolSC47t61120H Brassica oleracea HOM05D001033 ORTHO05D004888 5.0e-06 55.5 24 95.8


User provided reference genes

Program Settings