Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20730 Brassica carinata HOM05D002852 ORTHO05D003174 1.2e-52 209.5 104 100.0
C09p39780 Brassica napus HOM05D002852 ORTHO05D003174 1.2e-52 209.5 104 100.0
BolC9t56880H Brassica oleracea HOM05D002852 ORTHO05D003174 1.2e-52 209.5 104 100.0
Carub.0008s1115 Capsella rubella HOM05D002852 ORTHO05D003174 2.3e-35 152.1 88 86.4
CARHR256960 Cardamine hirsuta HOM05D002852 ORTHO05D003174 5.1e-35 151.0 88 83.0
A03p16320 Brassica napus HOM05D002852 ORTHO05D003174 1.5e-34 149.4 88 83.0
BraA03t10923Z Brassica rapa HOM05D002852 ORTHO05D003174 1.5e-34 149.4 88 83.0
BcaC01g06073 Brassica carinata HOM05D002852 ORTHO05D003174 1.9e-34 149.1 88 83.0
C03p19210 Brassica napus HOM05D002852 ORTHO05D003174 1.9e-34 149.1 88 83.0
BolC3t14308H Brassica oleracea HOM05D002852 ORTHO05D003174 1.9e-34 149.1 88 83.0
AT5G51110 Arabidopsis thaliana HOM05D002852 ORTHO05D003174 2.5e-34 148.7 97 77.3
BcaC01g06101 Brassica carinata HOM05D002852 ORTHO05D003174 7.4e-34 147.1 88 84.1
AL8G25370 Arabidopsis lyrata HOM05D002852 ORTHO05D003174 2.1e-33 145.6 97 77.3
Thhalv10014640m.g Eutrema salsugineum HOM05D002852 ORTHO05D003174 6.2e-33 144.1 88 81.8
Sp6g13300 Schrenkiella parvula HOM05D002852 ORTHO05D003174 1.4e-32 142.9 88 81.8
Aa31LG3G7610 Aethionema arabicum HOM05D002852 ORTHO05D003174 4.6e-28 127.9 90 71.1
Ciclev10032722m.g Citrus clementina HOM05D002852 ORTHO05D003174 1.4e-24 116.3 91 61.5
QL09p026846 Quercus lobata HOM05D002852 ORTHO05D003174 6.9e-24 114.0 89 60.7
TAR629G0429 Trochodendron aralioides HOM05D002852 ORTHO05D003174 2.0e-23 112.5 89 58.4
PGR042G2497 Punica granatum HOM05D002852 ORTHO05D003174 2.6e-23 112.1 98 55.1
Cfa013609 Carpinus fangiana HOM05D002852 ORTHO05D003174 3.4e-23 111.7 91 57.1
Manes.14G042100 Manihot esculenta HOM05D002852 ORTHO05D003174 3.4e-23 111.7 89 59.6
Atru.chr6.1968 Acer truncatum HOM05D002852 ORTHO05D003174 4.5e-23 111.3 89 59.6
MD07G1239200 Malus domestica HOM05D002852 ORTHO05D003174 5.8e-23 110.9 100 54.0
Dinv21883 Davidia involucrata HOM05D001058 ORTHO05D000911 7.6e-23 110.5 89 59.6
Thecc.03G144200 Theobroma cacao HOM05D002852 ORTHO05D003174 7.6e-23 110.5 89 59.6
Nn1g00695 Nelumbo nucifera HOM05D002852 ORTHO05D003174 1.0e-22 110.2 89 58.4
Potri.012G112400 Populus trichocarpa HOM05D002852 ORTHO05D003174 1.0e-22 110.2 98 54.1
CiPaw.08G043200 Carya illinoinensis HOM05D002852 ORTHO05D003174 2.2e-22 109.0 89 57.3
COL.COLO4_37295 Corchorus olitorius HOM05D002852 ORTHO05D003174 2.2e-22 109.0 89 59.6
Gohir.D07G049500 Gossypium hirsutum HOM05D002852 ORTHO05D003174 2.2e-22 109.0 89 58.4
Gorai.001G052600 Gossypium raimondii HOM05D002852 ORTHO05D003174 2.2e-22 109.0 89 58.4
Duzib205G1356 Durio zibethinus HOM05D002852 ORTHO05D003174 2.9e-22 108.6 89 59.6
Glyma.02G087800 Glycine max HOM05D002852 ORTHO05D003174 6.5e-22 107.5 89 58.4
arahy.Tifrunner.gnm1.ann1.9L0MNF Arachis hypogaea HOM05D002852 ORTHO05D003174 8.4e-22 107.1 89 56.2
arahy.Tifrunner.gnm1.ann1.R68HYG Arachis hypogaea HOM05D002852 ORTHO05D003174 8.4e-22 107.1 89 56.2
Haze_22232 Corylus avellana HOM05D002852 ORTHO05D003174 8.4e-22 107.1 92 57.6
TWI39G1091 Tripterygium wilfordii HOM05D002852 ORTHO05D003174 8.4e-22 107.1 89 58.4
CSS0017040 Camellia sinensis var. sinensis HOM05D002852 ORTHO05D003174 1.1e-21 106.7 91 57.1
Lj6g0005255 Lotus japonicus HOM05D002852 ORTHO05D003174 1.1e-21 106.7 88 59.1
Sabra15G0132400 Salix brachista HOM05D002852 ORTHO05D003174 1.1e-21 106.7 98 54.1
Gohir.A07G045100 Gossypium hirsutum HOM05D002852 ORTHO05D003174 1.4e-21 106.3 89 57.3
TPR.G20784 Trifolium pratense HOM05D002852 ORTHO05D003174 1.9e-21 105.9 89 59.6
Phvul.007G240500 Phaseolus vulgaris HOM05D002852 ORTHO05D003174 3.2e-21 105.1 89 57.3
Eucgr.A02949 Eucalyptus grandis HOM05D002852 ORTHO05D003174 4.2e-21 104.8 89 56.2
Psat6g049600 Pisum sativum HOM05D002852 ORTHO05D003174 4.2e-21 104.8 89 57.3
Potri.015G110500 Populus trichocarpa HOM05D002852 ORTHO05D003174 7.2e-21 104.0 98 52.0
FvH4_7g26390 Fragaria vesca HOM05D002852 ORTHO05D003174 1.6e-20 102.8 87 55.2
FAN03G3189 Fragaria x ananassa HOM05D002852 ORTHO05D003174 1.6e-20 102.8 87 56.3
FAN06G0464 Fragaria x ananassa HOM05D002852 ORTHO05D003174 1.6e-20 102.8 87 55.2
FAN10G4234 Fragaria x ananassa HOM05D002852 ORTHO05D003174 2.1e-20 102.4 101 49.5
Lalb_Chr01g0010491 Lupinus albus HOM05D002852 ORTHO05D003174 2.1e-20 102.4 89 53.9
Medtr1g048970 Medicago truncatula HOM05D002852 ORTHO05D003174 2.7e-20 102.1 89 55.1
Cpa.g.sc13.211 Carica papaya HOM05D002852 ORTHO05D003174 4.6e-20 101.3 88 53.4
Glyma.10G117200 Glycine max HOM05D002852 ORTHO05D003174 4.6e-20 101.3 89 55.1
RcHm_v2.0_Chr1g0372941 Rosa chinensis HOM05D002852 ORTHO05D003174 6.1e-20 100.9 87 54.0
CANSAT56G0606 Cannabis sativa HOM05D002852 ORTHO05D003174 1.0e-19 100.1 91 53.8
FAN01G3135 Fragaria x ananassa HOM05D002852 ORTHO05D003174 1.3e-19 99.8 91 52.7
MELO3C005462.2 Cucumis melo HOM05D002852 ORTHO05D003174 1.8e-19 99.4 89 52.8
Sabra12G0081800 Salix brachista HOM05D002852 ORTHO05D003174 1.8e-19 99.4 98 50.0
ClCG01G004740 Citrullus lanatus HOM05D002852 ORTHO05D003174 6.7e-19 97.4 89 52.8
Cc05_g05260 Coffea canephora HOM05D002852 ORTHO05D003174 6.7e-19 97.4 89 50.6
Lj8A50T64 Lonicera japonica HOM05D002852 ORTHO05D003174 6.7e-19 97.4 90 52.2
Aqoxy7G00868 Aquilegia oxysepala HOM05D002852 ORTHO05D003174 1.9e-18 95.9 91 48.4
CsaV3_5G004930 Cucumis sativus L. HOM05D002852 ORTHO05D003174 1.9e-18 95.9 89 51.7
VMungo0720G2236 Vigna mungo HOM05D002852 ORTHO05D003174 1.9e-18 95.9 89 51.7
ECA238G2083 Erigeron canadensis HOM05D002852 ORTHO05D003174 2.5e-18 95.5 88 52.3
Oeu024266.1 Olea europaea HOM05D002852 ORTHO05D003174 5.7e-18 94.4 89 51.7
CAN.G77.17 Capsicum annuum HOM05D002852 ORTHO05D003174 9.7e-18 93.6 90 53.3
Sed0002451 Sechium edule HOM05D002852 ORTHO05D003174 1.3e-17 93.2 88 50.0
Lsat_1_v5_gn_5_45400 Lactuca sativa HOM05D002852 ORTHO05D003174 1.6e-17 92.8 89 48.3
THA.LOC104811545 Tarenaya hassleriana HOM05D002852 ORTHO05D003174 1.6e-17 92.8 88 54.5
GSVIVG01013845001 Vitis vinifera HOM05D002852 ORTHO05D003174 3.7e-17 91.7 71 59.2
Atru.chr6.138 Acer truncatum HOM05D002348 ORTHO05D002512 6.3e-17 90.9 80 56.2
Nitab4.5_0001130g0110 Nicotiana tabacum HOM05D002852 ORTHO05D003174 1.1e-16 90.1 90 52.2
Nitab4.5_0000103g0120 Nicotiana tabacum HOM05D002852 ORTHO05D003174 4.1e-16 88.2 90 52.2
PSO675G6527 Papaver somniferum HOM05D002852 ORTHO05D003174 4.1e-16 88.2 89 46.1
DCAR_018067 Daucus carota HOM05D002852 ORTHO05D003174 9.0e-16 87.0 91 50.5
PSO732G0560 Papaver somniferum HOM05D002852 ORTHO05D003174 9.0e-16 87.0 89 46.1
SalBow3G0580 Salvia bowleyana HOM05D002852 ORTHO05D003174 2.0e-15 85.9 88 52.3
PGSC0003DMG400005246 Solanum tuberosum HOM05D002852 ORTHO05D003174 2.6e-15 85.5 90 48.9
Solyc03g094175.1 Solanum lycopersicum HOM05D002852 ORTHO05D003174 3.4e-15 85.1 90 48.9
Solyc03g094177.1 Solanum lycopersicum HOM05D002852 ORTHO05D003174 3.4e-15 85.1 90 48.9
Sopen03g025160 Solanum pennellii HOM05D002852 ORTHO05D003174 4.5e-15 84.7 90 48.9
HPP92_020689 Vanilla planifolia HOM05D002852 ORTHO05D003174 5.9e-15 84.3 88 46.6
MSTRG.27242 Avicennia marina HOM05D002852 ORTHO05D003174 7.7e-15 84.0 88 47.7
vmacro06861 Vaccinium macrocarpon HOM05D002852 ORTHO05D003174 7.7e-15 84.0 66 54.5
Mapoly0069s0079 Marchantia polymorpha HOM05D002852 ORTHO05D003174 1.7e-14 82.8 102 42.2
Peaxi162Scf00073g01923 Petunia axillaris HOM05D002852 ORTHO05D003174 3.8e-14 81.6 90 50.0
EL10Ac4g07721 Beta vulgaris HOM05D002852 ORTHO05D003174 5.0e-14 81.3 90 45.6
PGR102G2462 Punica granatum HOM05D002852 ORTHO05D003174 8.5e-14 80.5 71 52.1
HanXRQChr14g0461031 Helianthus annuus HOM05D002852 ORTHO05D003174 7.2e-13 77.4 89 43.8
ATR0829G006 Amborella trichopoda HOM05D002852 ORTHO05D003174 9.4e-13 77.0 83 48.2
AagrBONN_evm.TU.Sc2ySwM_228.3628 Anthoceros agrestis HOM05D002852 ORTHO05D003174 1.6e-12 76.3 91 41.8
Sc09g0006130 Simmondsia chinensis HOM05D002852 ORTHO05D003174 3.6e-12 75.1 76 47.4
SEGI_30151 Sequoiadendron giganteum HOM05D002852 ORTHO05D003174 4.6e-12 74.7 81 43.2
Ca_21524_v3 Cicer arietinum L. HOM05D001918 ORTHO05D001931 6.1e-12 74.3 59 57.6
CDE11G0485 Ceratophyllum demersum HOM05D002852 ORTHO05D003174 1.5e-10 69.7 68 47.1
unitig_37.g11918 Utricularia gibba HOM05D002852 ORTHO05D003174 1.5e-10 69.7 89 46.1
SGA_v2.0_scaffold60G20857 Striga asiatica HOM05D002852 ORTHO05D003174 9.7e-10 67.0 127 33.9
Ah.06g182420 Amaranthus hybridus HOM05D002852 ORTHO05D003174 2.2e-09 65.9 88 38.6
Os03g0100200 Oryza sativa ssp. japonica HOM05D002852 ORTHO05D003174 3.1e-08 62.0 89 36.0
Prupe.2G268000 Prunus persica HOM05D002852 ORTHO05D003174 6.9e-08 60.8 91 40.7
Zm00001eb063250 Zea mays HOM05D002852 ORTHO05D003174 6.9e-08 60.8 102 40.2
Actinidia31650 Actinidia chinensis HOM05D002852 ORTHO05D003174 4.5e-07 58.2 54 50.0
CANSAT35G1426 Cannabis sativa HOM05D002852 ORTHO05D003174 1.7e-06 56.2 78 38.5
Thecc.06G156400 Theobroma cacao HOM05D002852 ORTHO05D003174 3.8e-06 55.1 71 39.4
unitig_61.g26021 Utricularia gibba HOM05D002852 ORTHO05D003174 5.0e-06 54.7 71 42.3
Duzib101G0002 Durio zibethinus HOM05D002852 ORTHO05D003174 6.5e-06 54.3 71 39.4
Duzib192G0410 Durio zibethinus HOM05D002852 ORTHO05D003174 6.5e-06 54.3 71 39.4


User provided reference genes

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