Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 1.3e-102 376.3 183 100.0
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 2.7e-100 368.6 189 96.3
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 1.7e-94 349.4 188 91.5
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 1.2e-92 343.2 188 89.9
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 1.8e-88 329.3 188 85.6
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 1.7e-86 322.8 188 85.1
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 5.2e-83 311.2 188 80.9
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 2.6e-82 308.9 188 83.5
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 9.8e-82 307.0 188 80.9
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 1.1e-80 303.5 188 83.0
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 2.4e-80 302.4 189 81.0
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 5.4e-80 301.2 197 79.7
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 1.6e-79 299.7 188 81.4
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 5.0e-78 294.7 195 79.5
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 2.3e-75 285.8 189 76.7
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 5.4e-72 274.6 188 71.3
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 4.0e-67 258.5 205 65.4
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 8.9e-59 230.7 189 60.3
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 5.8e-58 228.0 189 61.4
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 1.9e-56 223.0 110 95.5
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 1.9e-56 223.0 184 60.9
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 5.4e-56 221.5 189 61.4
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 2.7e-55 219.2 185 59.5
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 1.0e-54 217.2 192 55.2
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 3.9e-54 215.3 185 59.5
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 3.3e-53 212.2 185 58.9
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.3e-53 212.2 185 57.8
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 3.3e-53 212.2 141 67.4
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 5.6e-53 211.5 190 57.9
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 5.6e-53 211.5 185 58.9
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 5.6e-53 211.5 185 58.9
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 7.3e-53 211.1 185 57.8
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 9.5e-53 210.7 185 57.3
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 9.5e-53 210.7 187 58.3
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 1.2e-52 210.3 189 57.7
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 1.2e-52 210.3 191 58.1
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 4.7e-52 208.4 186 56.5
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 8.1e-52 207.6 185 57.3
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 8.1e-52 207.6 190 57.9
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.1e-51 207.2 185 56.8
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 1.1e-51 207.2 189 57.7
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 1.4e-51 206.8 185 56.2
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 1.4e-51 206.8 186 59.7
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 2.4e-51 206.1 185 55.7
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 2.4e-51 206.1 185 57.3
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 2.4e-51 206.1 185 55.7
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 3.1e-51 205.7 148 65.5
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 6.8e-51 204.5 185 55.1
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 6.8e-51 204.5 185 56.8
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 6.8e-51 204.5 186 57.0
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 1.2e-50 203.8 221 48.0
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 2.6e-50 202.6 175 56.0
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 3.4e-50 202.2 185 55.1
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 5.8e-50 201.4 185 56.2
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 5.8e-50 201.4 141 66.0
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 5.8e-50 201.4 128 73.4
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 9.9e-50 200.7 143 66.4
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 1.3e-49 200.3 128 72.7
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 1.7e-49 199.9 170 57.1
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 1.7e-49 199.9 185 55.7
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 1.7e-49 199.9 186 54.8
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 2.9e-49 199.1 188 54.8
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 3.8e-49 198.7 187 55.1
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 4.9e-49 198.4 186 55.4
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 4.9e-49 198.4 185 53.0
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 8.4e-49 197.6 153 60.1
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 8.4e-49 197.6 185 55.1
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.1e-48 197.2 186 54.8
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 1.1e-48 197.2 189 55.6
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 1.1e-48 197.2 143 65.7
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 1.4e-48 196.8 186 54.3
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 2.4e-48 196.1 196 53.1
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 3.2e-48 195.7 191 55.5
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 4.1e-48 195.3 186 54.3
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 4.1e-48 195.3 186 54.3
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 5.4e-48 194.9 175 54.3
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 1.6e-47 193.4 175 54.3
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 1.6e-47 193.4 183 54.6
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 2.1e-47 193.0 142 64.1
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 2.1e-47 193.0 187 54.5
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 2.7e-47 192.6 135 65.2
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 3.5e-47 192.2 230 48.3
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 3.5e-47 192.2 187 52.4
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 3.5e-47 192.2 194 54.1
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 3.5e-47 192.2 150 61.3
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 7.8e-47 191.0 135 64.4
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 7.8e-47 191.0 186 52.2
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 7.8e-47 191.0 147 63.9
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.3e-46 190.3 189 52.4
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 1.3e-46 190.3 189 54.0
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 1.3e-46 190.3 133 64.7
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 1.7e-46 189.9 187 53.5
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 2.3e-46 189.5 129 68.2
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 3.0e-46 189.1 185 53.0
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 3.0e-46 189.1 130 68.5
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 5.1e-46 188.3 189 52.4
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 5.1e-46 188.3 189 52.4
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 5.1e-46 188.3 137 63.5
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 6.6e-46 188.0 147 61.2
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 6.6e-46 188.0 189 52.4
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 6.6e-46 188.0 182 53.3
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 8.7e-46 187.6 189 52.4
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 2.5e-45 186.0 195 51.8
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 2.5e-45 186.0 185 50.8
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 7.3e-45 184.5 133 65.4
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 9.6e-45 184.1 188 52.7
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 2.1e-44 183.0 185 52.4
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 2.8e-44 182.6 115 67.8
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 3.6e-44 182.2 154 58.4
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 6.2e-44 181.4 185 52.4
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 6.2e-44 181.4 185 48.1
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 4.0e-43 178.7 131 64.1
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 4.4e-42 175.3 129 64.3
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 4.4e-42 175.3 123 68.3
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 3.8e-41 172.2 182 50.5
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 6.4e-41 171.4 167 54.5
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 6.4e-41 171.4 152 56.6
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 1.1e-40 170.6 129 63.6
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 3.5e-39 165.6 254 41.7
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 3.0e-38 162.5 115 63.5
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 4.3e-37 158.7 72 100.0
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 7.3e-37 157.9 159 52.8
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.1e-35 154.1 160 51.2
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 1.1e-35 154.1 276 37.0
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 1.4e-35 153.7 116 59.5
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 8.4e-33 144.4 87 70.1
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 1.6e-31 140.2 115 54.8
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 6.7e-30 134.8 125 48.0
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 9.6e-29 131.0 125 56.0
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.7e-28 129.0 86 66.3
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 4.5e-26 122.1 79 65.8
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 7.6e-26 121.3 90 64.4
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 3.8e-25 119.0 80 72.5
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 6.4e-25 118.2 116 50.0
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 3.9e-22 109.0 72 62.5
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 8.7e-22 107.8 65 69.2
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 2.1e-20 103.2 146 35.6
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.2e-18 97.4 130 47.7
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 1.7e-17 93.6 152 34.2
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 4.2e-16 89.0 53 71.7
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 4.6e-15 85.5 117 44.4
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 3.2e-08 62.8 92 42.4
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 2.1e-07 60.1 35 71.4


User provided reference genes

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