Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p39400 Brassica napus HOM05D004220 ORTHO05D039209 8.6e-24 112.8 58 100.0
BcaC04g20775 Brassica carinata HOM05D004220 ORTHO05D039209 1.1e-13 79.3 45 91.1
AT1G14810 Arabidopsis thaliana HOM05D004220 ORTHO05D006217 4.4e-12 73.9 40 95.0
BcaB03g13081 Brassica carinata HOM05D004220 ORTHO05D006217 4.4e-12 73.9 40 95.0
BcaC07g38762 Brassica carinata HOM05D004220 ORTHO05D006217 4.4e-12 73.9 40 95.0
A08p31810 Brassica napus HOM05D004220 ORTHO05D006217 4.4e-12 73.9 40 95.0
C08p16920 Brassica napus HOM05D004220 ORTHO05D006217 4.4e-12 73.9 40 95.0
BolC8t49319H Brassica oleracea HOM05D004220 ORTHO05D006217 4.4e-12 73.9 40 95.0
BraA08t35103Z Brassica rapa HOM05D004220 ORTHO05D006217 4.4e-12 73.9 40 95.0
CARHR015340 Cardamine hirsuta HOM05D004220 ORTHO05D006217 4.4e-12 73.9 40 95.0
Thhalv10007952m.g Eutrema salsugineum HOM05D004220 ORTHO05D006217 4.4e-12 73.9 40 95.0
Sp1g13250 Schrenkiella parvula HOM05D004220 ORTHO05D006217 4.4e-12 73.9 40 95.0
Carub.0001s1460 Capsella rubella HOM05D004220 ORTHO05D006217 9.8e-12 72.8 40 92.5
AL1G26830 Arabidopsis lyrata HOM05D004220 ORTHO05D006217 3.7e-11 70.9 40 92.5
BcaB02g06550 Brassica carinata HOM05D004220 ORTHO05D006217 3.7e-11 70.9 40 92.5
A06p10860 Brassica napus HOM05D004220 ORTHO05D006217 3.7e-11 70.9 40 92.5
C05p12790 Brassica napus HOM05D004220 ORTHO05D006217 3.7e-11 70.9 40 92.5
BraA06t24264Z Brassica rapa HOM05D004220 ORTHO05D006217 3.7e-11 70.9 40 92.5
THA.LOC104805088 Tarenaya hassleriana HOM05D004220 ORTHO05D006217 3.7e-11 70.9 40 92.5
THA.LOC104824123 Tarenaya hassleriana HOM05D004220 ORTHO05D006217 3.7e-11 70.9 40 92.5
BcaC05g25401 Brassica carinata HOM05D004220 ORTHO05D006217 8.3e-11 69.7 40 90.0
BolC5t30019H Brassica oleracea HOM05D004220 ORTHO05D006217 8.3e-11 69.7 40 90.0
Aa31LG1G290 Aethionema arabicum HOM05D004220 ORTHO05D006217 1.4e-10 68.9 40 90.0
Oeu044002.1 Olea europaea HOM05D004220 ORTHO05D006217 1.4e-10 68.9 40 90.0
ClCG07G005480 Citrullus lanatus HOM05D004220 ORTHO05D006217 2.4e-10 68.2 40 90.0
MELO3C010427.2 Cucumis melo HOM05D004220 ORTHO05D006217 2.4e-10 68.2 40 90.0
CsaV3_5G014440 Cucumis sativus L. HOM05D004220 ORTHO05D006217 2.4e-10 68.2 40 90.0
Sed0023691 Sechium edule HOM05D004220 ORTHO05D006217 2.4e-10 68.2 40 90.0
CAN.G282.120 Capsicum annuum HOM05D004220 ORTHO05D006217 3.2e-10 67.8 40 90.0
Nitab4.5_0000198g0090 Nicotiana tabacum HOM05D004220 ORTHO05D006217 3.2e-10 67.8 40 90.0
Nitab4.5_0000640g0100 Nicotiana tabacum HOM05D004220 ORTHO05D006217 3.2e-10 67.8 40 90.0
Solyc01g005250.4 Solanum lycopersicum HOM05D004220 ORTHO05D006217 3.2e-10 67.8 40 90.0
Sopen01g001280 Solanum pennellii HOM05D004220 ORTHO05D006217 3.2e-10 67.8 40 90.0
PGSC0003DMG400022796 Solanum tuberosum HOM05D004220 ORTHO05D006217 3.2e-10 67.8 40 90.0
SMO119G0035 Selaginella moellendorffii HOM05D004220 ORTHO05D006217 4.1e-10 67.4 40 90.0
TWI74G0333 Tripterygium wilfordii HOM05D004220 ORTHO05D006217 7.1e-10 66.6 40 87.5
Mapoly0086s0044 Marchantia polymorpha HOM05D004220 ORTHO05D006217 1.2e-09 65.9 40 87.5
SEGI_30189 Sequoiadendron giganteum HOM05D004220 ORTHO05D006217 1.2e-09 65.9 40 87.5
ATR0763G027 Amborella trichopoda HOM05D004220 ORTHO05D006217 1.6e-09 65.5 40 87.5
arahy.Tifrunner.gnm1.ann1.GF1W8W Arachis hypogaea HOM05D004220 ORTHO05D006217 1.6e-09 65.5 40 87.5
Dinv26357 Davidia involucrata HOM05D004220 ORTHO05D006217 1.6e-09 65.5 40 87.5
Nn4g24652 Nelumbo nucifera HOM05D004220 ORTHO05D006217 1.6e-09 65.5 40 87.5
PSO302G0185 Papaver somniferum HOM05D004220 ORTHO05D006217 1.6e-09 65.5 40 87.5
TAR622G1230 Trochodendron aralioides HOM05D004220 ORTHO05D006217 1.6e-09 65.5 40 87.5
Sabra08G0103700 Salix brachista HOM05D004220 ORTHO05D006217 2.1e-09 65.1 40 87.5
Sed0000427 Sechium edule HOM05D004220 ORTHO05D006217 2.1e-09 65.1 40 87.5
unitig_27.g25162 Utricularia gibba HOM05D004220 ORTHO05D006217 2.1e-09 65.1 40 87.5
unitig_29.g31883 Utricularia gibba HOM05D004220 ORTHO05D006217 2.1e-09 65.1 40 87.5
FvH4_4g33450 Fragaria vesca HOM05D004220 ORTHO05D006217 3.5e-09 64.3 40 85.0
FAN07G0058 Fragaria x ananassa HOM05D004220 ORTHO05D006217 3.5e-09 64.3 40 85.0
FAN07G1238 Fragaria x ananassa HOM05D004220 ORTHO05D006217 3.5e-09 64.3 40 85.0
FAN12G0660 Fragaria x ananassa HOM05D004220 ORTHO05D006217 3.5e-09 64.3 40 85.0
FAN17G0395 Fragaria x ananassa HOM05D004220 ORTHO05D006217 3.5e-09 64.3 40 85.0
FAN22G0209 Fragaria x ananassa HOM05D004220 ORTHO05D006217 3.5e-09 64.3 40 85.0
HPP92_001024 Vanilla planifolia HOM05D004220 ORTHO05D006217 3.5e-09 64.3 40 85.0
CDE07G1395 Ceratophyllum demersum HOM05D004220 ORTHO05D006217 4.6e-09 63.9 40 85.0
Manes.15G135500 Manihot esculenta HOM05D004220 ORTHO05D006217 4.6e-09 63.9 40 85.0
Potri.008G135700 Populus trichocarpa HOM05D004220 ORTHO05D006217 4.6e-09 63.9 40 85.0
PGR102G3065 Punica granatum HOM05D004220 ORTHO05D006217 4.6e-09 63.9 40 85.0
DCAR_002675 Daucus carota HOM05D004220 ORTHO05D006217 6.0e-09 63.5 40 85.0
DCAR_022139 Daucus carota HOM05D004220 ORTHO05D006217 6.0e-09 63.5 40 85.0
Ah.05g168430 Amaranthus hybridus HOM05D004220 ORTHO05D006217 7.8e-09 63.2 40 85.0
AagrBONN_evm.TU.Sc2ySwM_368.1674 Anthoceros agrestis HOM05D004220 ORTHO05D006217 7.8e-09 63.2 40 85.0
RcHm_v2.0_Chr4g0442761 Rosa chinensis HOM05D004220 ORTHO05D006217 7.8e-09 63.2 40 82.5
MSTRG.13631 Avicennia marina HOM05D004220 ORTHO05D006217 1.0e-08 62.8 40 85.0
MBI05_g37451_MAGBIO Magnolia biondii HOM05D004220 ORTHO05D006217 1.0e-08 62.8 40 85.0
MD13G1019500 Malus domestica HOM05D004220 ORTHO05D006217 1.0e-08 62.8 40 82.5
Medtr8g105860 Medicago truncatula HOM05D004220 ORTHO05D006217 1.0e-08 62.8 40 85.0
PSO541G1847 Papaver somniferum HOM05D004220 ORTHO05D006217 1.0e-08 62.8 40 85.0
SalBow2G3345 Salvia bowleyana HOM05D004220 ORTHO05D006217 1.0e-08 62.8 40 85.0
Hund08335 Selenicereus undatus HOM05D004220 ORTHO05D006217 1.0e-08 62.8 40 85.0
Sc17g0004200 Simmondsia chinensis HOM05D004220 ORTHO05D006217 1.0e-08 62.8 40 85.0
Actinidia12400 Actinidia chinensis HOM05D004220 ORTHO05D006217 1.3e-08 62.4 40 85.0
Cpa.g.sc2.184 Carica papaya HOM05D004220 ORTHO05D006217 1.3e-08 62.4 40 82.5
MD16G1017700 Malus domestica HOM05D004220 ORTHO05D006217 1.3e-08 62.4 40 82.5
SGA_v2.0_scaffold23G10178 Striga asiatica HOM05D004220 ORTHO05D006217 1.3e-08 62.4 40 82.5
TAR371G0933 Trochodendron aralioides HOM05D004220 ORTHO05D006217 1.3e-08 62.4 40 85.0
Lj6A736T83 Lonicera japonica HOM05D004220 ORTHO05D006217 1.7e-08 62.0 40 85.0
Pp3c5_10760 Physcomitrium patens HOM05D004220 ORTHO05D006217 1.7e-08 62.0 40 82.5
Potri.010G105000 Populus trichocarpa HOM05D004220 ORTHO05D006217 1.7e-08 62.0 40 85.0
Potri.010G105300 Populus trichocarpa HOM05D004220 ORTHO05D006217 1.7e-08 62.0 40 85.0
Os03g0760700 Oryza sativa ssp. japonica HOM05D004220 ORTHO05D006217 2.3e-08 61.6 40 82.5
Zm00001eb214360 Zea mays HOM05D004220 ORTHO05D006217 2.3e-08 61.6 40 82.5
Gohir.A12G154900 Gossypium hirsutum HOM05D004220 ORTHO05D006217 3.0e-08 61.2 40 82.5
Gorai.008G170900 Gossypium raimondii HOM05D004220 ORTHO05D006217 3.0e-08 61.2 40 82.5
CiPaw.06G053400 Carya illinoinensis HOM05D004220 ORTHO05D006217 3.9e-08 60.8 40 82.5
Ca_17252_v3 Cicer arietinum L. HOM05D004220 ORTHO05D006217 3.9e-08 60.8 40 82.5
Dinv18907 Davidia involucrata HOM05D004220 ORTHO05D006217 3.9e-08 60.8 40 82.5
CANSAT78G0088 Cannabis sativa HOM05D004220 ORTHO05D006217 5.1e-08 60.5 40 80.0
Glyma.08G047800 Glycine max HOM05D004220 ORTHO05D006217 5.1e-08 60.5 40 82.5
Prupe.1G334400 Prunus persica HOM05D004220 ORTHO05D006217 5.1e-08 60.5 40 80.0
Atru.chr11.900 Acer truncatum HOM05D004220 ORTHO05D006217 6.6e-08 60.1 40 82.5
CBR_g30041 Chara braunii HOM05D004220 ORTHO05D006217 6.6e-08 60.1 40 82.5
AUR62015160 Chenopodium quinoa HOM05D004220 ORTHO05D006217 6.6e-08 60.1 40 82.5
AUR62017612 Chenopodium quinoa HOM05D004220 ORTHO05D006217 6.6e-08 60.1 40 82.5
Ciclev10015633m.g Citrus clementina HOM05D004220 ORTHO05D006217 6.6e-08 60.1 40 82.5
Migut.E00492 Erythranthe guttata HOM05D004220 ORTHO05D006217 6.6e-08 60.1 40 82.5
Thecc.02G309700 Theobroma cacao HOM05D004220 ORTHO05D006217 6.6e-08 60.1 40 80.0
Cfa015032 Carpinus fangiana HOM05D004220 ORTHO05D006217 8.6e-08 59.7 40 82.5
Haze_10865 Corylus avellana HOM05D004220 ORTHO05D006217 8.6e-08 59.7 40 82.5
Eucgr.B03437 Eucalyptus grandis HOM05D004220 ORTHO05D006217 8.6e-08 59.7 40 82.5
Glyma.05G240700 Glycine max HOM05D004220 ORTHO05D006217 8.6e-08 59.7 40 82.5
HanXRQChr06g0171081 Helianthus annuus HOM05D004220 ORTHO05D006217 8.6e-08 59.7 40 82.5
HanXRQChr12g0364941 Helianthus annuus HOM05D004220 ORTHO05D006217 8.6e-08 59.7 40 82.5
Lsat_1_v5_gn_8_35340 Lactuca sativa HOM05D004220 ORTHO05D006217 8.6e-08 59.7 40 82.5
Lj4g0025833 Lotus japonicus HOM05D004220 ORTHO05D006217 8.6e-08 59.7 40 82.5
LjContig00081g0015221 Lotus japonicus HOM05D004220 ORTHO05D006217 8.6e-08 59.7 40 82.5
Phvul.002G323900 Phaseolus vulgaris HOM05D004220 ORTHO05D006217 8.6e-08 59.7 40 82.5
QL03p036195 Quercus lobata HOM05D004220 ORTHO05D006217 8.6e-08 59.7 40 82.5
TPR.G19271 Trifolium pratense HOM05D004220 ORTHO05D006217 8.6e-08 59.7 40 82.5
VMungo0251G0500 Vigna mungo HOM05D004220 ORTHO05D006217 8.6e-08 59.7 40 82.5
EL10Ac9g22864 Beta vulgaris HOM05D004220 ORTHO05D006217 1.1e-07 59.3 48 68.8
ECA233G3753 Erigeron canadensis HOM05D004220 ORTHO05D006217 1.1e-07 59.3 40 82.5
SGA_v2.0_scaffold143G35733 Striga asiatica HOM05D004220 ORTHO05D006217 1.1e-07 59.3 40 80.0
Aqoxy6G01748 Aquilegia oxysepala HOM05D004220 ORTHO05D006217 1.5e-07 58.9 40 77.5
Lalb_Chr05g0222081 Lupinus albus HOM05D004220 ORTHO05D006217 1.9e-07 58.5 40 80.0
GSVIVG01011646001 Vitis vinifera HOM05D004220 ORTHO05D006217 1.9e-07 58.5 40 82.5
COL.COLO4_27642 Corchorus olitorius HOM05D004220 ORTHO05D006217 2.5e-07 58.2 40 80.0
Duzib248G1338 Durio zibethinus HOM05D004220 ORTHO05D006217 2.5e-07 58.2 40 80.0
Gohir.A13G026900 Gossypium hirsutum HOM05D004220 ORTHO05D006217 2.5e-07 58.2 40 80.0
Gohir.D13G025700 Gossypium hirsutum HOM05D004220 ORTHO05D006217 2.5e-07 58.2 40 80.0
Gorai.013G028900 Gossypium raimondii HOM05D004220 ORTHO05D006217 2.5e-07 58.2 40 80.0
Lalb_Chr16g0387441 Lupinus albus HOM05D004220 ORTHO05D006217 2.5e-07 58.2 40 80.0
Psat4g004640 Pisum sativum HOM05D004220 ORTHO05D006217 2.5e-07 58.2 40 80.0
Cre09.g389689 Chlamydomonas reinhardtii HOM05D004220 ORTHO05D006217 4.3e-07 57.4 40 80.0
Duzib251G0717 Durio zibethinus HOM05D004220 ORTHO05D006217 4.3e-07 57.4 40 80.0
Lalb_Chr09g0330781 Lupinus albus HOM05D004220 ORTHO05D006217 7.3e-07 56.6 40 77.5
PRCOL_00000291 Prasinoderma coloniale HOM05D004220 ORTHO05D006217 7.3e-07 56.6 40 77.5
Actinidia36618 Actinidia chinensis HOM05D004220 ORTHO05D006217 9.5e-07 56.2 40 80.0
MCO01G646 Micromonas commoda HOM05D004220 ORTHO05D006217 6.2e-06 53.5 40 70.0


User provided reference genes

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