Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20940 Brassica carinata HOM05D004240 ORTHO05D005082 1.8e-47 192.2 94 100.0
A09p29740 Brassica napus HOM05D004240 ORTHO05D005082 1.8e-47 192.2 94 100.0
C09p37710 Brassica napus HOM05D004240 ORTHO05D005082 1.8e-47 192.2 94 100.0
BolC9t56602H Brassica oleracea HOM05D004240 ORTHO05D005082 1.8e-47 192.2 94 100.0
BraA09t38538Z Brassica rapa HOM05D004240 ORTHO05D005082 1.8e-47 192.2 94 100.0
Sp6g08590 Schrenkiella parvula HOM05D004240 ORTHO05D005082 5.8e-46 187.2 94 95.7
BcaB01g01378 Brassica carinata HOM05D004240 ORTHO05D005082 2.9e-45 184.9 94 95.7
Thhalv10029093m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 1.2e-43 179.5 94 91.5
BcaC01g04739 Brassica carinata HOM05D004240 ORTHO05D005082 1.6e-43 179.1 94 94.7
C03p34300 Brassica napus HOM05D004240 ORTHO05D005082 1.6e-43 179.1 94 94.7
BcaB01g02826 Brassica carinata HOM05D004240 ORTHO05D005082 2.1e-43 178.7 94 94.7
A03p28370 Brassica napus HOM05D004240 ORTHO05D005082 3.9e-42 174.5 90 92.2
BraA03t12042Z Brassica rapa HOM05D004240 ORTHO05D005082 3.9e-42 174.5 90 92.2
AL6G41500 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 8.7e-42 173.3 94 88.3
BolC3t15739H Brassica oleracea HOM05D004240 ORTHO05D005082 8.7e-42 173.3 94 92.6
Carub.0006s2760 Capsella rubella HOM05D004240 ORTHO05D005082 7.3e-41 170.2 94 87.2
Thhalv10028005m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 1.3e-40 169.5 94 89.4
AT5G40080 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 1.1e-39 166.4 91 89.0
AT5G39800 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 1.4e-39 166.0 91 87.9
AL7G50490 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 1.5e-38 162.5 91 86.8
CARHR262430 Cardamine hirsuta HOM05D004240 ORTHO05D005082 9.9e-38 159.8 86 86.0
Carub.0007s3595 Capsella rubella HOM05D004240 ORTHO05D005082 1.3e-37 159.5 91 84.6
Aa31LG9G14690 Aethionema arabicum HOM05D004240 ORTHO05D005082 2.7e-35 151.8 94 80.9
Manes.18G063900 Manihot esculenta HOM05D004240 ORTHO05D005082 1.0e-34 149.8 94 77.7
PGR031G0804 Punica granatum HOM05D004240 ORTHO05D005082 1.3e-34 149.4 94 74.5
Manes.02G149200 Manihot esculenta HOM05D004240 ORTHO05D005082 1.8e-34 149.1 94 76.6
Gohir.A06G033500 Gossypium hirsutum HOM05D004240 ORTHO05D005082 2.3e-34 148.7 94 76.6
Gohir.D06G034400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 2.3e-34 148.7 94 76.6
Gorai.010G037900 Gossypium raimondii HOM05D004240 ORTHO05D005082 2.3e-34 148.7 94 76.6
ClCG09G002640 Citrullus lanatus HOM05D004240 ORTHO05D005082 3.9e-34 147.9 93 74.2
Psat2g132800 Pisum sativum HOM05D004240 ORTHO05D005082 3.9e-34 147.9 91 75.8
Psat4g105040 Pisum sativum HOM05D004240 ORTHO05D005082 3.9e-34 147.9 91 75.8
QL06p048114 Quercus lobata HOM05D004240 ORTHO05D005082 5.1e-34 147.5 93 77.4
FAN15G0929 Fragaria x ananassa HOM05D004240 ORTHO05D005082 6.7e-34 147.1 94 76.6
FAN18G4030 Fragaria x ananassa HOM05D004240 ORTHO05D005082 6.7e-34 147.1 94 76.6
MELO3C023395.2 Cucumis melo HOM05D004240 ORTHO05D005082 8.7e-34 146.7 93 73.1
Potri.006G070700 Populus trichocarpa HOM05D004240 ORTHO05D005082 8.7e-34 146.7 94 75.5
THA.LOC104813109 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 8.7e-34 146.7 94 76.6
Ca_06044_v3 Cicer arietinum L. HOM05D004240 ORTHO05D005082 1.1e-33 146.4 94 72.3
RcHm_v2.0_Chr3g0492081 Rosa chinensis HOM05D004240 ORTHO05D005082 1.1e-33 146.4 94 75.5
Peaxi162Scf00030g02315 Petunia axillaris HOM05D004240 ORTHO05D005082 1.5e-33 146.0 92 73.9
Peaxi162Scf00074g01332 Petunia axillaris HOM05D004240 ORTHO05D005082 1.5e-33 146.0 92 73.9
Sed0017764 Sechium edule HOM05D004240 ORTHO05D005082 1.5e-33 146.0 84 79.8
Thecc.08G102200 Theobroma cacao HOM05D004240 ORTHO05D005082 1.5e-33 146.0 94 75.5
GSVIVG01009082001 Vitis vinifera HOM05D004240 ORTHO05D005082 1.5e-33 146.0 93 75.3
FvH4_2g10720 Fragaria vesca HOM05D004240 ORTHO05D005082 1.9e-33 145.6 94 75.5
FAN20G0937 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.9e-33 145.6 94 75.5
PGR004G1351 Punica granatum HOM05D004240 ORTHO05D005082 1.9e-33 145.6 94 75.5
Cfa002500 Carpinus fangiana HOM05D004240 ORTHO05D005082 2.5e-33 145.2 94 74.5
FvH4_5g36580 Fragaria vesca HOM05D004240 ORTHO05D005082 2.5e-33 145.2 94 75.5
FAN13G1462 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.5e-33 145.2 94 75.5
Nn1g05456 Nelumbo nucifera HOM05D004240 ORTHO05D005082 3.3e-33 144.8 94 74.5
QL12p001007 Quercus lobata HOM05D004240 ORTHO05D005082 3.3e-33 144.8 93 75.3
Sed0022777 Sechium edule HOM05D004240 ORTHO05D005082 3.3e-33 144.8 94 71.3
Cpa.g.sc79.33 Carica papaya HOM05D004240 ORTHO05D005082 4.3e-33 144.4 94 74.5
COL.COLO4_12008 Corchorus olitorius HOM05D004240 ORTHO05D005082 4.3e-33 144.4 94 73.4
RcHm_v2.0_Chr7g0242281 Rosa chinensis HOM05D004240 ORTHO05D005082 4.3e-33 144.4 94 74.5
Haze_24725 Corylus avellana HOM05D004240 ORTHO05D005082 5.6e-33 144.1 94 74.5
CsaV3_7G032690 Cucumis sativus L. HOM05D004240 ORTHO05D005082 5.6e-33 144.1 93 72.0
FAN24G1588 Fragaria x ananassa HOM05D004240 ORTHO05D005082 5.6e-33 144.1 94 74.5
Glyma.04G099100 Glycine max HOM05D004240 ORTHO05D005082 5.6e-33 144.1 91 73.6
Sabra06G0052600 Salix brachista HOM05D004240 ORTHO05D005082 5.6e-33 144.1 93 74.2
Ciclev10013208m.g Citrus clementina HOM05D004240 ORTHO05D005082 7.4e-33 143.7 93 75.3
MD02G1257900 Malus domestica HOM05D004240 ORTHO05D005082 7.4e-33 143.7 94 75.5
PSO700G0162 Papaver somniferum HOM05D004240 ORTHO05D005082 7.4e-33 143.7 94 75.5
Phvul.009G033000 Phaseolus vulgaris HOM05D004240 ORTHO05D005082 7.4e-33 143.7 91 73.6
CiPaw.04G103700 Carya illinoinensis HOM05D004240 ORTHO05D005082 9.6e-33 143.3 94 73.4
THA.LOC104816621 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 9.6e-33 143.3 95 74.7
DCAR_014024 Daucus carota HOM05D004240 ORTHO05D005082 1.3e-32 142.9 94 72.3
Eucgr.F00376 Eucalyptus grandis HOM05D004240 ORTHO05D005082 1.3e-32 142.9 94 73.4
FAN04G0949 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.3e-32 142.9 94 73.4
Sc20g0000280 Simmondsia chinensis HOM05D004240 ORTHO05D005082 1.3e-32 142.9 94 71.3
Dinv44804 Davidia involucrata HOM05D004240 ORTHO05D005082 1.6e-32 142.5 94 72.3
TWI36G0317 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 1.6e-32 142.5 94 74.5
Hma1.2p1_1613F.1_g293659 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 2.1e-32 142.1 91 71.4
Rhsim10G0001600 Rhododendron simsii HOM05D004240 ORTHO05D005082 2.1e-32 142.1 94 72.3
AUR62004912 Chenopodium quinoa HOM05D004240 ORTHO05D005082 2.8e-32 141.7 92 73.9
Duzib093G0975 Durio zibethinus HOM05D004240 ORTHO05D005082 2.8e-32 141.7 94 73.4
CSS0016123 Camellia sinensis var. sinensis HOM05D004240 ORTHO05D005082 3.7e-32 141.4 93 69.9
DCAR_010173 Daucus carota HOM05D004240 ORTHO05D005082 3.7e-32 141.4 94 72.3
Rhsim02G0249800 Rhododendron simsii HOM05D004240 ORTHO05D005082 3.7e-32 141.4 94 72.3
Solyc04g074690.3 Solanum lycopersicum HOM05D004240 ORTHO05D005082 3.7e-32 141.4 93 72.0
Sopen04g029660 Solanum pennellii HOM05D004240 ORTHO05D005082 3.7e-32 141.4 93 72.0
Cc06_g04150 Coffea canephora HOM05D004240 ORTHO05D005082 4.8e-32 141.0 95 71.6
FAN08G1894 Fragaria x ananassa HOM05D004240 ORTHO05D005082 4.8e-32 141.0 82 78.0
MD08G1188400 Malus domestica HOM05D004240 ORTHO05D005082 4.8e-32 141.0 94 74.5
TAR628G1673 Trochodendron aralioides HOM05D004240 ORTHO05D005082 4.8e-32 141.0 94 72.3
vmacro18578 Vaccinium macrocarpon HOM05D004240 ORTHO05D005082 4.8e-32 141.0 94 71.3
Aqoxy2G03827 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 6.2e-32 140.6 92 71.7
Dinv08862 Davidia involucrata HOM05D004240 ORTHO05D005082 6.2e-32 140.6 94 72.3
Glyma.06G100800 Glycine max HOM05D004240 ORTHO05D005082 6.2e-32 140.6 83 77.1
Potri.005G161600 Populus trichocarpa HOM05D004240 ORTHO05D005082 8.1e-32 140.2 94 71.3
Medtr5g045910 Medicago truncatula HOM05D000029 ORTHO05D002519 1.1e-31 139.8 93 75.3
PSO447G0232 Papaver somniferum HOM05D004240 ORTHO05D005082 1.1e-31 139.8 94 73.4
unitig_32.g11785 Utricularia gibba HOM05D004240 ORTHO05D005082 1.1e-31 139.8 81 79.0
PSO541G3534 Papaver somniferum HOM05D004240 ORTHO05D005082 1.4e-31 139.4 94 71.3
PSO675G3208 Papaver somniferum HOM05D004240 ORTHO05D005082 1.4e-31 139.4 94 71.3
Rhsim08G0013500 Rhododendron simsii HOM05D004240 ORTHO05D005082 1.4e-31 139.4 94 71.3
SalBow8G1434 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.8e-31 139.0 86 70.9
SalBow8G1852 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.8e-31 139.0 86 70.9
Hund06956 Selenicereus undatus HOM05D004240 ORTHO05D005082 2.4e-31 138.7 94 71.3
TAR381G0524 Trochodendron aralioides HOM05D004240 ORTHO05D005082 2.4e-31 138.7 94 72.3
arahy.Tifrunner.gnm1.ann1.29DKEH Arachis hypogaea HOM05D004240 ORTHO05D005082 3.1e-31 138.3 94 71.3
arahy.Tifrunner.gnm1.ann1.US6JCC Arachis hypogaea HOM05D004240 ORTHO05D005082 3.1e-31 138.3 88 72.7
AUR62011808 Chenopodium quinoa HOM05D004240 ORTHO05D005082 3.1e-31 138.3 92 71.7
Prupe.1G522900 Prunus persica HOM05D004240 ORTHO05D005082 4.0e-31 137.9 94 72.3
SalBow1G5590 Salvia bowleyana HOM05D004240 ORTHO05D005082 4.0e-31 137.9 81 75.3
Prupe.6G102500 Prunus persica HOM05D004240 ORTHO05D005082 5.3e-31 137.5 92 70.7
arahy.Tifrunner.gnm1.ann1.CGL9LR Arachis hypogaea HOM05D004240 ORTHO05D005082 6.9e-31 137.1 94 71.3
arahy.Tifrunner.gnm1.ann1.LFKE78 Arachis hypogaea HOM05D004240 ORTHO05D005082 6.9e-31 137.1 94 71.3
Ah.06g187980 Amaranthus hybridus HOM05D004240 ORTHO05D005082 9.0e-31 136.7 90 68.9
CANSAT01G1074 Cannabis sativa HOM05D004240 ORTHO05D005082 9.0e-31 136.7 94 70.2
Migut.H02239 Erythranthe guttata HOM05D004240 ORTHO05D005082 9.0e-31 136.7 82 75.6
TWI12G0685 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 9.0e-31 136.7 94 70.2
CDE10G0460 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 2.2e-29 132.1 89 69.7
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 4.9e-29 131.0 82 73.2
ECA247G1074 Erigeron canadensis HOM05D004240 ORTHO05D005082 6.4e-29 130.6 94 64.9
Lsat_1_v5_gn_6_104280 Lactuca sativa HOM05D004240 ORTHO05D005082 6.4e-29 130.6 89 68.5
CDE10G1133 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 8.4e-29 130.2 89 68.5
ECA246G1644 Erigeron canadensis HOM05D004240 ORTHO05D005082 8.4e-29 130.2 94 66.0
HanXRQChr05g0163111 Helianthus annuus HOM05D004240 ORTHO05D005082 1.4e-28 129.4 93 68.8
Lalb_Chr23g0270361 Lupinus albus HOM05D004240 ORTHO05D005082 1.9e-28 129.0 90 64.4
HanXRQChr10g0278161 Helianthus annuus HOM05D004240 ORTHO05D005082 2.5e-28 128.6 94 68.1
SalBow1G7711 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.5e-28 128.6 90 67.8
Zm00001eb211130 Zea mays HOM05D004240 ORTHO05D005082 4.2e-28 127.9 94 64.9
HPP92_003085 Vanilla planifolia HOM05D000111 ORTHO05D000134 1.3e-26 122.9 73 75.3
Nn5g30001 Nelumbo nucifera HOM05D004240 ORTHO05D005082 5.1e-26 120.9 94 64.9
Peaxi162Scf00701g00514 Petunia axillaris HOM05D004240 ORTHO05D005082 8.7e-26 120.2 94 60.6
Ah.06g192140 Amaranthus hybridus HOM05D004240 ORTHO05D005082 1.5e-25 119.4 122 52.5
Duzib041G0743 Durio zibethinus HOM05D004240 ORTHO05D005082 1.9e-25 119.0 70 77.1
Oeu048963.1 Olea europaea HOM05D004240 ORTHO05D005082 2.5e-25 118.6 83 65.1
Sabra05G0122300 Salix brachista HOM05D004240 ORTHO05D005082 3.3e-25 118.2 71 76.1
Oeu009430.2 Olea europaea HOM05D004240 ORTHO05D005082 7.4e-25 117.1 70 75.7
Atru.chr8.235 Acer truncatum HOM05D004240 ORTHO05D005082 1.3e-24 116.3 70 78.6
CAN.G857.13 Capsicum annuum HOM05D004240 ORTHO05D005082 1.6e-24 115.9 71 74.6
EL10Ac6g15351 Beta vulgaris HOM05D004240 ORTHO05D005082 4.8e-24 114.4 70 75.7
AUR62041013 Chenopodium quinoa HOM05D004240 ORTHO05D005082 4.8e-24 114.4 71 74.6
Nitab4.5_0000786g0040 Nicotiana tabacum HOM05D004240 ORTHO05D005082 4.8e-24 114.4 71 73.2
Nitab4.5_0003599g0030 Nicotiana tabacum HOM05D004240 ORTHO05D005082 6.2e-24 114.0 70 74.3
PGSC0003DMG400030836 Solanum tuberosum HOM05D004240 ORTHO05D005082 6.2e-24 114.0 70 74.3
Nitab4.5_0002632g0100 Nicotiana tabacum HOM05D004240 ORTHO05D005082 5.3e-23 110.9 117 51.3
Aqoxy2G00790 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 4.5e-22 107.8 71 71.8
AUR62043370 Chenopodium quinoa HOM05D004240 ORTHO05D005082 3.8e-21 104.8 71 69.0
CAN.G900.47 Capsicum annuum HOM05D004240 ORTHO05D005082 5.5e-20 100.9 68 66.2
Gohir.D05G226400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 7.1e-20 100.5 96 55.2
Zm00001eb032040 Zea mays HOM05D004240 ORTHO05D005082 7.1e-20 100.5 96 55.2
Atru.chr13.1119 Acer truncatum HOM05D004240 ORTHO05D005082 7.9e-19 97.1 70 70.0
Mapoly0032s0009 Marchantia polymorpha HOM05D004240 ORTHO05D005082 1.3e-18 96.3 90 52.2
Actinidia06540 Actinidia chinensis HOM05D004240 ORTHO05D005082 5.1e-18 94.4 61 70.5
Cc03_g14470 Coffea canephora HOM05D004240 ORTHO05D005082 5.1e-18 94.4 71 62.0
Pp3c24_110 Physcomitrium patens HOM05D004240 ORTHO05D005082 9.7e-17 90.1 84 51.2
AT4G09012 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 3.7e-16 88.2 48 87.5
Gorai.009G234000 Gossypium raimondii HOM05D004240 ORTHO05D005082 8.2e-16 87.0 92 55.4
SalBow1G1735 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.3e-13 79.7 51 68.6
SalBow1G5084 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.3e-13 79.7 51 68.6
SalBow1G6918 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.3e-13 79.7 51 68.6
SalBow1G8490 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.3e-13 79.7 51 68.6
Nitab4.5_0000101g0440 Nicotiana tabacum HOM05D004240 ORTHO05D005082 3.8e-13 78.2 99 46.5
SalBow1G3565 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.8e-13 78.2 49 71.4
AagrBONN_evm.TU.Sc2ySwM_368.1442 Anthoceros agrestis HOM05D004240 ORTHO05D005082 2.5e-12 75.5 63 52.4
Hma1.2p1_1148F.1_g261590 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 9.4e-12 73.6 49 71.4
PRCOL_00003521 Prasinoderma coloniale HOM05D004240 ORTHO05D005082 9.4e-12 73.6 56 58.9
SalBow1G1053 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.6e-11 71.6 47 63.8
SalBow5G4864 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.8e-10 69.3 49 63.3
HanXRQChr02g0058081 Helianthus annuus HOM05D004240 ORTHO05D005082 3.7e-08 61.6 53 54.7
MBI04_g21152_MAGBIO Magnolia biondii HOM05D004240 ORTHO05D005082 5.3e-07 57.8 42 61.9


User provided reference genes

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