Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p36870 Brassica napus HOM05D001034 ORTHO05D040586 3.6e-28 127.5 62 100.0
BolC9t56518H Brassica oleracea HOM05D001034 ORTHO05D040586 4.3e-21 104.0 52 100.0
BolC1t01666H Brassica oleracea HOM05D005885 ORTHO05D023940 2.6e-10 68.2 40 80.0
BolC2t10740H Brassica oleracea HOM05D005885 ORTHO05D023940 5.8e-10 67.0 40 80.0
BolC3t14965H Brassica oleracea HOM05D001034 ORTHO05D023940 1.7e-09 65.5 39 79.5
BcaC03g16819 Brassica carinata HOM05D067971 ORTHO05D023940 6.4e-09 63.5 39 76.9
AL8G43500 Arabidopsis lyrata HOM05D001034 ORTHO05D000955 1.0e-06 56.2 37 73.0
BcaB05g23137 Brassica carinata HOM05D001034 ORTHO05D000955 1.0e-06 56.2 33 81.8
BcaC09g49966 Brassica carinata HOM05D001034 ORTHO05D000955 1.0e-06 56.2 33 81.8
A01p24600 Brassica napus HOM05D001034 ORTHO05D000955 1.0e-06 56.2 33 81.8
C01p30690 Brassica napus HOM05D001034 ORTHO05D000955 1.0e-06 56.2 33 81.8
BolC1t03003H Brassica oleracea HOM05D001034 ORTHO05D000955 1.0e-06 56.2 33 81.8
BraA01t02371Z Brassica rapa HOM05D001034 ORTHO05D000955 1.0e-06 56.2 33 81.8
Cfa006786 Carpinus fangiana HOM05D001034 ORTHO05D000955 1.0e-06 56.2 37 75.7
MD02G1191100 Malus domestica HOM05D001034 ORTHO05D000955 1.0e-06 56.2 37 75.7
MD02G1191300 Malus domestica HOM05D001034 ORTHO05D000955 1.0e-06 56.2 37 75.7
Manes.12G118700 Manihot esculenta HOM05D001034 ORTHO05D000955 1.0e-06 56.2 34 76.5
Sp5g12410 Schrenkiella parvula HOM05D001034 ORTHO05D000955 1.0e-06 56.2 33 81.8
Actinidia11954 Actinidia chinensis HOM05D001034 ORTHO05D000955 1.3e-06 55.8 33 81.8
Actinidia36412 Actinidia chinensis HOM05D001034 ORTHO05D000955 1.3e-06 55.8 33 81.8
AL5G29630 Arabidopsis lyrata HOM05D001034 ORTHO05D000955 1.3e-06 55.8 37 73.0
CAN.G1343.19 Capsicum annuum HOM05D001034 ORTHO05D000955 1.3e-06 55.8 37 73.0
AUR62021367 Chenopodium quinoa HOM05D001034 ORTHO05D000955 1.3e-06 55.8 37 67.6
COL.COLO4_11633 Corchorus olitorius HOM05D001034 ORTHO05D000955 1.3e-06 55.8 33 81.8
Haze_03971 Corylus avellana HOM05D001034 ORTHO05D000955 1.3e-06 55.8 33 81.8
Duzib187G1136 Durio zibethinus HOM05D001034 ORTHO05D000955 1.3e-06 55.8 33 81.8
FvH4_1g18510 Fragaria vesca HOM05D001034 ORTHO05D000955 1.3e-06 55.8 33 81.8
FAN19G0276 Fragaria x ananassa HOM05D001034 ORTHO05D000955 1.3e-06 55.8 33 81.8
FAN23G1668 Fragaria x ananassa HOM05D001034 ORTHO05D000955 1.3e-06 55.8 33 81.8
FAN26G3394 Fragaria x ananassa HOM05D001034 ORTHO05D000955 1.3e-06 55.8 33 81.8
FAN28G0136 Fragaria x ananassa HOM05D001034 ORTHO05D000955 1.3e-06 55.8 33 81.8
Gohir.A11G211200 Gossypium hirsutum HOM05D001034 ORTHO05D000955 1.3e-06 55.8 33 81.8
Gohir.D11G211900 Gossypium hirsutum HOM05D001034 ORTHO05D000955 1.3e-06 55.8 33 81.8
Gorai.007G227600 Gossypium raimondii HOM05D001034 ORTHO05D000955 1.3e-06 55.8 33 81.8
MD15G1302500 Malus domestica HOM05D001034 ORTHO05D000955 1.3e-06 55.8 33 81.8
Nn3g18439 Nelumbo nucifera HOM05D001034 ORTHO05D000955 1.3e-06 55.8 33 81.8
Nn4g24485 Nelumbo nucifera HOM05D001034 ORTHO05D000955 1.3e-06 55.8 33 81.8
Nitab4.5_0003478g0020 Nicotiana tabacum HOM05D001034 ORTHO05D000955 1.3e-06 55.8 37 73.0
Oeu061536.1 Olea europaea HOM05D001034 ORTHO05D000955 1.3e-06 55.8 37 73.0
Oeu061810.1 Olea europaea HOM05D001034 ORTHO05D000955 1.3e-06 55.8 37 73.0
Peaxi162Scf00096g01719 Petunia axillaris HOM05D001034 ORTHO05D000955 1.3e-06 55.8 37 73.0
Potri.007G008000 Populus trichocarpa HOM05D001034 ORTHO05D000955 1.3e-06 55.8 33 81.8
QL06p038426 Quercus lobata HOM05D001034 ORTHO05D000955 1.3e-06 55.8 33 81.8
Rhsim10G0049400 Rhododendron simsii HOM05D001034 ORTHO05D000955 1.3e-06 55.8 33 81.8
RcHm_v2.0_Chr2g0109141 Rosa chinensis HOM05D001034 ORTHO05D000955 1.3e-06 55.8 33 81.8
SalBow3G2307 Salvia bowleyana HOM05D001034 ORTHO05D000955 1.3e-06 55.8 37 73.0
Solyc02g091970.4 Solanum lycopersicum HOM05D001034 ORTHO05D000955 1.3e-06 55.8 37 73.0
Sopen02g036540 Solanum pennellii HOM05D001034 ORTHO05D000955 1.3e-06 55.8 37 73.0
PGSC0003DMG400021425 Solanum tuberosum HOM05D001034 ORTHO05D000955 1.3e-06 55.8 37 73.0
SGA_v2.0_scaffold121G33070 Striga asiatica HOM05D001034 ORTHO05D000955 1.3e-06 55.8 37 73.0
THA.LOC104801908 Tarenaya hassleriana HOM05D001034 ORTHO05D000955 1.3e-06 55.8 33 81.8
THA.LOC104808469 Tarenaya hassleriana HOM05D001034 ORTHO05D000955 1.3e-06 55.8 33 81.8
THA.LOC104821218 Tarenaya hassleriana HOM05D001034 ORTHO05D000955 1.3e-06 55.8 33 81.8
TWI53G0655 Tripterygium wilfordii HOM05D001034 ORTHO05D000955 1.3e-06 55.8 33 81.8
TWI74G0267 Tripterygium wilfordii HOM05D001034 ORTHO05D000955 1.3e-06 55.8 33 81.8
TAR376G0429 Trochodendron aralioides HOM05D001034 ORTHO05D000955 1.3e-06 55.8 33 81.8
unitig_899.g14593 Utricularia gibba HOM05D001034 ORTHO05D000955 1.3e-06 55.8 37 73.0
Atru.chr3.1078 Acer truncatum HOM05D001034 ORTHO05D000955 1.7e-06 55.5 33 78.8
AT3G49680 Arabidopsis thaliana HOM05D001034 ORTHO05D000955 1.7e-06 55.5 33 78.8
MSTRG.2800 Avicennia marina HOM05D001034 ORTHO05D000955 1.7e-06 55.5 37 73.0
CANSAT21G0415 Cannabis sativa HOM05D001034 ORTHO05D000955 1.7e-06 55.5 37 73.0
Carub.0005s1603 Capsella rubella HOM05D001034 ORTHO05D000955 1.7e-06 55.5 33 78.8
CiPaw.07G038300 Carya illinoinensis HOM05D001034 ORTHO05D000955 1.7e-06 55.5 33 78.8
CDE02G4321 Ceratophyllum demersum HOM05D001034 ORTHO05D000955 1.7e-06 55.5 37 73.0
CDE04G0326 Ceratophyllum demersum HOM05D001034 ORTHO05D000955 1.7e-06 55.5 37 73.0
Cc07_g07510 Coffea canephora HOM05D001034 ORTHO05D000955 1.7e-06 55.5 33 78.8
Oeu013350.1 Olea europaea HOM05D001034 ORTHO05D000955 1.7e-06 55.5 33 78.8
Lj2A424T68 Lonicera japonica HOM05D001034 ORTHO05D000955 2.3e-06 55.1 37 73.0
Aa31LG1G16290 Aethionema arabicum HOM05D001034 ORTHO05D000955 3.0e-06 54.7 33 75.8
Aqoxy1G03498 Aquilegia oxysepala HOM05D001034 ORTHO05D000955 3.0e-06 54.7 33 78.8
Aqoxy7G01411 Aquilegia oxysepala HOM05D001034 ORTHO05D000955 3.0e-06 54.7 33 75.8
CSS0039128 Camellia sinensis var. sinensis HOM05D001034 ORTHO05D000955 3.0e-06 54.7 33 78.8
CSS0044075 Camellia sinensis var. sinensis HOM05D001034 ORTHO05D000955 3.0e-06 54.7 33 78.8
CANSAT21G2604 Cannabis sativa HOM05D001034 ORTHO05D000955 3.0e-06 54.7 33 78.8
Cpa.g.sc129.58 Carica papaya HOM05D001034 ORTHO05D000955 3.0e-06 54.7 33 78.8
DCAR_014322 Daucus carota HOM05D001034 ORTHO05D000955 3.0e-06 54.7 37 70.3
Duzib264G0251 Durio zibethinus HOM05D001034 ORTHO05D000955 3.0e-06 54.7 33 78.8
ECA233G3472 Erigeron canadensis HOM05D001034 ORTHO05D000955 3.0e-06 54.7 37 70.3
Migut.H00317 Erythranthe guttata HOM05D001034 ORTHO05D000955 3.0e-06 54.7 37 70.3
FAN27G3061 Fragaria x ananassa HOM05D001034 ORTHO05D000955 3.0e-06 54.7 37 67.6
HanXRQChr07g0190981 Helianthus annuus HOM05D001034 ORTHO05D000955 3.0e-06 54.7 37 70.3
Hma1.2p1_0424F.1_g150330 Hydrangea macrophylla HOM05D001034 ORTHO05D000955 3.0e-06 54.7 33 75.8
Lsat_1_v5_gn_5_45560 Lactuca sativa HOM05D001034 ORTHO05D000955 3.0e-06 54.7 37 70.3
Nitab4.5_0000419g0010 Nicotiana tabacum HOM05D001034 ORTHO05D000955 3.0e-06 54.7 37 70.3
Nitab4.5_0002639g0010 Nicotiana tabacum HOM05D001034 ORTHO05D000955 3.0e-06 54.7 37 70.3
Sabra07G0006200 Salix brachista HOM05D001034 ORTHO05D000955 3.0e-06 54.7 33 78.8
SGA_v2.0_scaffold269G46266 Striga asiatica HOM05D001034 ORTHO05D000955 3.0e-06 54.7 37 70.3
vmacro16487 Vaccinium macrocarpon HOM05D001034 ORTHO05D000955 3.0e-06 54.7 33 78.8
Atru.chr13.890 Acer truncatum HOM05D001034 ORTHO05D000955 3.9e-06 54.3 33 78.8
arahy.Tifrunner.gnm1.ann1.GL6CS5 Arachis hypogaea HOM05D001034 ORTHO05D000955 3.9e-06 54.3 33 78.8
arahy.Tifrunner.gnm1.ann1.WXR6C4 Arachis hypogaea HOM05D001034 ORTHO05D000955 3.9e-06 54.3 33 78.8
CSS0003140 Camellia sinensis var. sinensis HOM05D001034 ORTHO05D000955 3.9e-06 54.3 33 75.8
Lalb_Chr16g0379021 Lupinus albus HOM05D001034 ORTHO05D000955 3.9e-06 54.3 33 75.8
Solyc03g043880.3 Solanum lycopersicum HOM05D001034 ORTHO05D000955 3.9e-06 54.3 37 67.6
Sopen03g007690 Solanum pennellii HOM05D001034 ORTHO05D000955 3.9e-06 54.3 37 67.6
PGSC0003DMG400017100 Solanum tuberosum HOM05D001034 ORTHO05D000955 3.9e-06 54.3 37 67.6
TWI12G0127 Tripterygium wilfordii HOM05D001034 ORTHO05D000955 3.9e-06 54.3 33 72.7
A08p03360 Brassica napus HOM05D001034 ORTHO05D000955 5.1e-06 53.9 37 64.9
BraA08t32368Z Brassica rapa HOM05D001034 ORTHO05D000955 5.1e-06 53.9 37 64.9
Lj2g0023341 Lotus japonicus HOM05D001034 ORTHO05D000955 5.1e-06 53.9 33 78.8
Manes.05G184700 Manihot esculenta HOM05D001034 ORTHO05D000955 5.1e-06 53.9 33 78.8
Mapoly0063s0060 Marchantia polymorpha HOM05D001034 ORTHO05D000955 5.1e-06 53.9 33 75.8
TWI12G0662 Tripterygium wilfordii HOM05D001034 ORTHO05D000955 5.1e-06 53.9 36 69.4
Dinv44919 Davidia involucrata HOM05D001034 ORTHO05D000955 6.6e-06 53.5 37 67.6
Manes.05G184600 Manihot esculenta HOM05D001034 ORTHO05D000955 6.6e-06 53.5 34 73.5
Ah.03g139510 Amaranthus hybridus HOM05D001034 ORTHO05D000955 8.6e-06 53.1 35 68.6
BcaB01g00684 Brassica carinata HOM05D001034 ORTHO05D000955 8.6e-06 53.1 33 78.8
BcaC07g39430 Brassica carinata HOM05D001034 ORTHO05D000955 8.6e-06 53.1 33 78.8
A06p18040 Brassica napus HOM05D001034 ORTHO05D000955 8.6e-06 53.1 33 78.8
C08p24690 Brassica napus HOM05D001034 ORTHO05D000955 8.6e-06 53.1 33 78.8
BolC8t50083H Brassica oleracea HOM05D001034 ORTHO05D000955 8.6e-06 53.1 33 78.8
BraA06t24893Z Brassica rapa HOM05D001034 ORTHO05D000955 8.6e-06 53.1 33 78.8
CARHR158750 Cardamine hirsuta HOM05D001034 ORTHO05D000955 8.6e-06 53.1 33 78.8
CARHR279780 Cardamine hirsuta HOM05D001034 ORTHO05D000955 8.6e-06 53.1 33 72.7
AUR62033279 Chenopodium quinoa HOM05D001034 ORTHO05D000955 8.6e-06 53.1 33 69.7
Ca_24666_v3 Cicer arietinum L. HOM05D001034 ORTHO05D000955 8.6e-06 53.1 37 70.3
DCAR_029490 Daucus carota HOM05D001034 ORTHO05D000955 8.6e-06 53.1 37 64.9
Glyma.06G050100 Glycine max HOM05D001034 ORTHO05D000955 8.6e-06 53.1 33 75.8
Lsat_1_v5_gn_6_10901 Lactuca sativa HOM05D001034 ORTHO05D000955 8.6e-06 53.1 37 67.6
MD15G1063100 Malus domestica HOM05D001034 ORTHO05D000955 8.6e-06 53.1 42 59.5
Peaxi162Scf00160g00837 Petunia axillaris HOM05D001034 ORTHO05D000955 8.6e-06 53.1 33 72.7
QL11p027918 Quercus lobata HOM05D001034 ORTHO05D000955 8.6e-06 53.1 33 72.7
Sabra09G0064100 Salix brachista HOM05D001034 ORTHO05D000955 8.6e-06 53.1 34 67.6


User provided reference genes

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