Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 2.6e-147 525.4 270 100.0
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 2.6e-147 525.4 270 100.0
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 2.6e-147 525.4 270 100.0
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 1.2e-123 446.8 280 86.1
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 1.7e-119 433.0 280 84.6
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 2.5e-81 306.2 284 66.2
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 2.3e-71 273.1 303 59.4
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 9.1e-68 261.2 319 54.9
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 2.5e-65 253.1 322 54.0
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.5e-62 243.8 324 52.2
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 2.0e-62 243.4 308 55.2
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 2.0e-62 243.4 308 55.2
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 2.2e-61 240.0 302 54.3
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 5.3e-60 235.3 348 48.0
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 2.6e-59 233.0 344 49.7
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 3.5e-59 232.6 344 49.7
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 3.5e-59 232.6 344 49.7
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 1.5e-57 227.3 302 53.0
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 9.1e-52 208.0 358 42.5
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 5.9e-43 178.7 372 39.0
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.0e-42 177.9 304 41.8
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 4.3e-33 146.0 242 45.0
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 8.0e-32 141.7 166 52.4
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 1.8e-31 140.6 312 35.6
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 1.2e-30 137.9 234 39.7
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 1.5e-30 137.5 320 34.7
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 1.5e-30 137.5 160 48.8
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 2.0e-30 137.1 142 52.8
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 9.8e-30 134.8 156 50.6
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 9.8e-30 134.8 146 50.0
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 1.3e-29 134.4 369 33.9
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 1.7e-29 134.0 142 49.3
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 2.2e-29 133.7 160 49.4
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 2.2e-29 133.7 168 48.8
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 2.2e-29 133.7 133 54.9
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.9e-29 133.3 329 33.4
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 3.7e-29 132.9 116 58.6
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 3.7e-29 132.9 282 36.5
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 3.7e-29 132.9 163 46.6
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 4.9e-29 132.5 318 34.0
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 6.4e-29 132.1 352 33.0
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 8.3e-29 131.7 155 49.0
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 8.3e-29 131.7 140 50.7
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.1e-28 131.3 314 35.7
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.1e-28 131.3 238 42.0
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 1.9e-28 130.6 297 35.4
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 1.9e-28 130.6 314 35.7
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 1.9e-28 130.6 152 50.0
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 2.4e-28 130.2 129 51.9
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.4e-28 130.2 170 45.9
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 3.2e-28 129.8 144 50.0
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 4.1e-28 129.4 110 55.5
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 5.4e-28 129.0 279 36.6
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 5.4e-28 129.0 110 54.5
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 5.4e-28 129.0 159 44.7
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 7.0e-28 128.6 320 32.8
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 7.0e-28 128.6 323 33.7
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 7.0e-28 128.6 332 34.9
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 9.2e-28 128.3 301 36.2
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 9.2e-28 128.3 278 35.6
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 9.2e-28 128.3 134 50.0
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 1.2e-27 127.9 304 32.9
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 1.2e-27 127.9 160 46.9
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.0e-27 127.1 310 34.5
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 2.7e-27 126.7 304 32.9
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.7e-27 126.7 310 35.2
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 3.5e-27 126.3 298 33.9
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 4.6e-27 125.9 377 31.0
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 4.6e-27 125.9 344 33.1
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 4.6e-27 125.9 127 50.4
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 6.0e-27 125.6 260 38.1
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 6.0e-27 125.6 136 51.5
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 7.8e-27 125.2 212 38.7
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 7.8e-27 125.2 178 40.4
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 1.0e-26 124.8 269 36.1
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 1.0e-26 124.8 304 33.9
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.0e-26 124.8 144 46.5
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.3e-26 124.4 296 34.1
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 1.3e-26 124.4 362 30.9
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 1.7e-26 124.0 359 30.9
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.3e-26 123.6 281 35.6
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 3.9e-26 122.9 298 34.2
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 3.9e-26 122.9 132 53.0
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 5.0e-26 122.5 267 32.2
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 5.0e-26 122.5 359 31.2
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 5.0e-26 122.5 166 44.6
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 5.0e-26 122.5 178 46.1
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 1.5e-25 120.9 359 31.2
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 1.5e-25 120.9 171 42.1
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.9e-25 120.6 279 35.5
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 1.9e-25 120.6 289 34.9
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 1.9e-25 120.6 115 49.6
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 2.5e-25 120.2 162 46.3
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 2.5e-25 120.2 128 49.2
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 3.3e-25 119.8 146 48.6
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 3.3e-25 119.8 299 34.4
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 3.3e-25 119.8 359 30.4
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 4.3e-25 119.4 302 33.8
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.2e-24 117.9 295 33.6
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.6e-24 117.5 154 46.8
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 2.1e-24 117.1 278 33.5
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 3.6e-24 116.3 134 47.0
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 6.2e-24 115.5 288 34.4
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 6.2e-24 115.5 288 33.7
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 6.2e-24 115.5 293 33.4
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 2.3e-23 113.6 331 32.0
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 3.1e-23 113.2 172 43.0
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 4.0e-23 112.8 323 33.7
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 4.0e-23 112.8 176 39.8
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 5.2e-23 112.5 281 33.5
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 6.8e-23 112.1 227 35.7
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 6.8e-23 112.1 177 40.1
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 8.9e-23 111.7 152 46.7
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 8.9e-23 111.7 268 31.3
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 8.9e-23 111.7 287 34.1
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 1.2e-22 111.3 152 46.7
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 1.2e-22 111.3 300 31.3
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 1.5e-22 110.9 195 36.4
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 4.4e-22 109.4 228 30.3
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 5.8e-22 109.0 165 42.4
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 2.9e-21 106.7 363 29.2
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 3.7e-21 106.3 166 40.4
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 4.9e-21 105.9 291 31.6
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 6.4e-21 105.5 97 54.6
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 1.4e-20 104.4 290 32.8
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 2.4e-20 103.6 306 32.0
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 3.2e-20 103.2 147 43.5
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 1.2e-19 101.3 284 29.2
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 2.7e-19 100.1 292 31.2
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 7.8e-19 98.6 280 33.6
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.3e-18 97.8 103 50.5
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.3e-18 97.8 103 50.5
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.7e-18 97.4 295 28.1
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 2.3e-18 97.1 106 50.0
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 3.0e-18 96.7 295 28.1
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 1.5e-17 94.4 275 31.6
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 1.9e-17 94.0 278 31.3
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 1.9e-17 94.0 278 31.3
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 2.5e-17 93.6 238 33.6
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 3.3e-17 93.2 278 31.3
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 3.3e-17 93.2 113 46.9
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 4.3e-17 92.8 277 31.4
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 4.3e-17 92.8 190 34.7
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 9.5e-17 91.7 140 45.0
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 9.5e-17 91.7 111 40.5
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 2.1e-16 90.5 274 30.7
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 4.7e-16 89.4 73 64.4
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 4.7e-16 89.4 276 30.8
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 1.4e-15 87.8 105 37.1
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.2e-14 84.7 73 61.6
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 2.0e-14 84.0 104 42.3
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 2.6e-14 83.6 131 37.4
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 4.4e-14 82.8 273 30.0
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 5.8e-14 82.4 139 38.8
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 6.4e-13 79.0 105 45.7
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 3.2e-12 76.6 231 30.7
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 3.2e-12 76.6 194 33.5
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 5.4e-12 75.9 128 35.2
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 2.1e-11 73.9 108 40.7
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 3.5e-11 73.2 193 32.1
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 6.0e-11 72.4 264 28.0
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 6.0e-11 72.4 264 28.0
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 7.8e-11 72.0 145 35.2
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 2.3e-10 70.5 264 28.4
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 3.9e-10 69.7 124 39.5
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 4.3e-09 66.2 281 26.7
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 7.3e-09 65.5 297 29.6
BcaC07g37962 Brassica carinata HOM05D003874 ORTHO05D004545 4.0e-07 59.7 133 41.4
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 3.4e-06 56.6 43 69.8
SMO112G0035 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 3.4e-06 56.6 133 29.3


User provided reference genes

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