Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 2.9e-114 415.2 209 100.0
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 1.3e-109 399.8 238 87.8
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 1.5e-86 323.2 173 94.8
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 1.4e-84 316.6 164 97.6
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 3.8e-82 308.5 173 90.8
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 3.8e-82 308.5 173 90.8
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 6.6e-82 307.8 202 81.2
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 1.1e-81 307.0 173 90.2
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 1.1e-81 307.0 173 90.2
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 1.5e-81 306.6 173 90.8
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 3.3e-81 305.4 173 89.6
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 3.3e-81 305.4 173 89.6
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 4.2e-81 305.1 173 89.6
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 1.6e-80 303.1 174 90.2
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 5.2e-79 298.1 173 87.9
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 6.8e-79 297.7 173 89.6
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 8.6e-74 280.8 182 81.3
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 1.6e-72 276.6 200 74.0
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 4.6e-67 258.5 158 86.1
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 6.0e-67 258.1 173 73.4
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 6.0e-67 258.1 173 73.4
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 1.0e-66 257.3 170 74.1
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 2.3e-66 256.1 168 73.8
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 2.3e-66 256.1 168 73.8
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 3.9e-66 255.4 173 72.8
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 2.5e-65 252.7 173 73.4
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 4.3e-65 251.9 158 78.5
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 9.5e-65 250.8 158 77.8
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 2.8e-64 249.2 166 74.7
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 2.3e-63 246.1 179 71.5
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 1.4e-60 236.9 170 71.8
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 1.4e-60 236.9 171 71.9
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 1.9e-60 236.5 170 70.6
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 3.2e-60 235.7 177 70.6
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 4.1e-60 235.3 168 70.8
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 1.2e-59 233.8 170 68.8
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 1.2e-59 233.8 156 75.0
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 2.1e-59 233.0 168 71.4
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 2.1e-59 233.0 168 68.5
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 3.5e-59 232.3 170 70.6
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 4.6e-59 231.9 170 70.6
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 6.0e-59 231.5 170 67.1
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 6.0e-59 231.5 170 70.0
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 1.3e-58 230.3 156 75.0
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 1.7e-58 229.9 172 69.8
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 1.7e-58 229.9 148 77.7
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 2.3e-58 229.6 169 67.5
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 2.3e-58 229.6 159 71.7
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 2.3e-58 229.6 168 68.5
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 3.0e-58 229.2 168 69.6
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 6.6e-58 228.0 207 62.3
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 6.6e-58 228.0 159 71.1
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 1.1e-57 227.3 170 69.4
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 1.5e-57 226.9 168 69.6
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 1.5e-57 226.9 170 67.6
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 1.5e-57 226.9 152 72.4
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 1.9e-57 226.5 169 69.8
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 3.3e-57 225.7 171 69.6
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 3.3e-57 225.7 154 74.7
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 3.3e-57 225.7 170 67.1
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 4.3e-57 225.3 168 69.0
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 5.6e-57 224.9 170 66.5
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 7.3e-57 224.6 170 66.5
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 7.3e-57 224.6 170 65.9
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 9.5e-57 224.2 202 61.9
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 9.5e-57 224.2 170 68.2
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 1.6e-56 223.4 176 65.3
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 1.6e-56 223.4 156 72.4
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 2.1e-56 223.0 169 66.9
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 2.8e-56 222.6 156 73.1
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 4.7e-56 221.9 170 67.1
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 6.2e-56 221.5 147 76.2
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 6.2e-56 221.5 170 67.1
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 8.1e-56 221.1 170 67.6
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 1.1e-55 220.7 172 66.3
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 1.1e-55 220.7 156 70.5
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 1.1e-55 220.7 170 67.1
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 1.4e-55 220.3 159 69.2
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 1.4e-55 220.3 147 76.2
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 1.8e-55 219.9 188 62.8
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 2.3e-55 219.5 170 66.5
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 3.1e-55 219.2 157 71.3
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 3.1e-55 219.2 150 72.7
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 3.1e-55 219.2 150 72.7
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 3.1e-55 219.2 150 72.7
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 3.1e-55 219.2 151 71.5
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 3.1e-55 219.2 147 75.5
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 5.2e-55 218.4 156 72.4
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 8.9e-55 217.6 170 64.7
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 1.2e-54 217.2 155 71.0
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 1.5e-54 216.9 172 65.1
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 2.6e-54 216.1 159 69.2
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 5.8e-54 214.9 159 68.6
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 5.8e-54 214.9 146 74.7
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 7.5e-54 214.5 172 64.5
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 7.5e-54 214.5 167 65.3
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 9.9e-54 214.2 163 69.3
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 1.3e-53 213.8 166 66.9
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 1.7e-53 213.4 148 70.9
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 1.7e-53 213.4 169 63.9
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 4.9e-53 211.8 157 67.5
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 6.4e-53 211.5 145 72.4
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 6.4e-53 211.5 148 72.3
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 1.1e-52 210.7 168 61.3
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 1.4e-52 210.3 172 64.0
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 1.9e-52 209.9 155 67.1
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 2.4e-52 209.5 156 64.1
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 3.2e-52 209.1 173 64.7
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 7.1e-52 208.0 171 62.0
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 9.2e-52 207.6 160 70.0
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 3.5e-51 205.7 148 68.9
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 1.3e-50 203.8 145 69.7
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 1.3e-50 203.8 148 68.2
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 6.6e-50 201.4 119 83.2
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 6.6e-50 201.4 155 65.2
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 8.6e-50 201.1 170 58.8
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 1.1e-49 200.7 156 64.7
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 1.5e-49 200.3 216 53.7
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 3.3e-49 199.1 168 63.7
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 3.3e-49 199.1 119 83.2
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 4.3e-49 198.7 170 62.9
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 4.3e-49 198.7 156 62.2
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 7.3e-49 198.0 199 55.3
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 1.6e-48 196.8 119 80.7
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 3.6e-48 195.7 167 62.9
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 3.6e-48 195.7 145 64.8
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 3.6e-48 195.7 156 60.3
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 8.1e-48 194.5 149 65.8
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 8.1e-48 194.5 149 65.8
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.1e-47 194.1 149 65.8
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 5.2e-47 191.8 165 60.6
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 1.2e-46 190.7 119 81.5
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 3.4e-46 189.1 173 56.6
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 7.6e-46 188.0 120 79.2
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 3.8e-45 185.7 118 78.8
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 3.8e-45 185.7 119 74.8
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 7.1e-44 181.4 119 74.8
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 1.5e-41 173.7 120 73.3
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 3.6e-40 169.1 151 57.0
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 6.2e-40 168.3 136 62.5
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 1.5e-38 163.7 146 54.8
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 3.4e-38 162.5 136 61.8
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 9.9e-38 161.0 85 96.5
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 2.9e-37 159.5 130 63.8
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 2.9e-37 159.5 146 52.7
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 3.8e-37 159.1 135 63.7
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 3.8e-37 159.1 122 67.2
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 4.9e-37 158.7 117 65.8
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 1.9e-36 156.8 145 55.2
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 1.6e-35 153.7 154 48.7
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 1.0e-34 151.0 130 56.9
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 2.6e-30 136.3 158 44.9
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 1.7e-29 133.7 150 47.3
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 2.1e-27 126.7 116 58.6
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 8.1e-24 114.8 93 59.1
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 1.4e-20 104.0 138 45.7
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 1.4e-20 104.0 108 53.7
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 1.6e-16 90.5 86 55.8
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.8e-15 87.0 89 47.2
arahy.Tifrunner.gnm1.ann1.B7FYB2 Arachis hypogaea HOM05D001689 ORTHO05D001643 1.1e-09 67.8 44 72.7
Dinv02982 Davidia involucrata HOM05D004360 ORTHO05D005195 6.3e-08 62.0 46 69.6
Dinv17160 Davidia involucrata HOM05D004360 ORTHO05D005195 6.3e-08 62.0 46 69.6
Dinv04074 Davidia involucrata HOM05D004360 ORTHO05D005195 4.1e-07 59.3 47 66.0
Dinv08764 Davidia involucrata HOM05D004360 ORTHO05D005195 5.3e-07 58.9 46 65.2
TPR.G39583 Trifolium pratense HOM05D004360 ORTHO05D005195 6.9e-07 58.5 44 59.1


User provided reference genes

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