Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p36190 Brassica napus HOM05D002474 ORTHO05D006727 4.5e-49 197.6 98 100.0
C09p60950 Brassica napus HOM05D002474 ORTHO05D006727 9.7e-44 179.9 97 92.8
BolC9t56457H Brassica oleracea HOM05D002474 ORTHO05D006727 1.3e-43 179.5 87 100.0
BcaB06g27397 Brassica carinata HOM05D002474 ORTHO05D006727 2.3e-37 158.7 98 81.6
BraA04t16928Z Brassica rapa HOM05D002474 ORTHO05D006727 1.5e-36 156.0 96 83.3
AL7G50200 Arabidopsis lyrata HOM05D002474 ORTHO05D006727 2.0e-36 155.6 96 81.2
Thhalv10028129m.g Eutrema salsugineum HOM05D002474 ORTHO05D006727 2.5e-36 155.2 96 81.2
Carub.0007s3579 Capsella rubella HOM05D002474 ORTHO05D006727 5.7e-36 154.1 96 80.2
CARHR262240 Cardamine hirsuta HOM05D002474 ORTHO05D006727 7.4e-36 153.7 96 80.2
Aa31LG9G1670 Aethionema arabicum HOM05D002474 ORTHO05D006727 9.1e-34 146.7 96 76.0
AT5G39940 Arabidopsis thaliana HOM05D002474 ORTHO05D006727 1.7e-32 142.5 96 77.1
THA.LOC104805441 Tarenaya hassleriana HOM05D002474 ORTHO05D006727 6.7e-29 130.6 96 70.8
A04p12710 Brassica napus HOM05D002474 ORTHO05D006727 1.8e-26 122.5 85 72.9
C04p46420 Brassica napus HOM05D002474 ORTHO05D006727 7.0e-26 120.6 85 71.8
BcaC04g18910 Brassica carinata HOM05D002474 ORTHO05D006727 2.6e-25 118.6 66 86.4
Ciclev10011620m.g Citrus clementina HOM05D002474 ORTHO05D006727 1.7e-24 115.9 96 62.5
COL.COLO4_24935 Corchorus olitorius HOM05D002474 ORTHO05D006727 2.9e-24 115.2 96 61.5
PGR083G0251 Punica granatum HOM05D002474 ORTHO05D006727 2.9e-24 115.2 96 59.4
Thecc.09G254500 Theobroma cacao HOM05D002474 ORTHO05D006727 5.0e-24 114.4 96 60.4
Atru.chr8.2476 Acer truncatum HOM05D002474 ORTHO05D006727 1.5e-23 112.8 96 59.4
Duzib168G1861 Durio zibethinus HOM05D002474 ORTHO05D006727 1.9e-23 112.5 96 59.4
Gohir.D13G224300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 1.9e-23 112.5 96 59.4
Gorai.013G255100 Gossypium raimondii HOM05D002474 ORTHO05D006727 1.9e-23 112.5 96 59.4
TAR629G1594 Trochodendron aralioides HOM05D002474 ORTHO05D006727 1.9e-23 112.5 105 55.2
CANSAT64G2711 Cannabis sativa HOM05D002474 ORTHO05D006727 2.5e-23 112.1 96 56.2
Gohir.A13G220300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 2.5e-23 112.1 96 58.3
ATR0609G116 Amborella trichopoda HOM05D002474 ORTHO05D006727 5.5e-23 110.9 96 57.3
HanXRQChr16g0519921 Helianthus annuus HOM05D002474 ORTHO05D006727 7.2e-23 110.5 96 57.3
HanXRQChr17g0547501 Helianthus annuus HOM05D002474 ORTHO05D006727 7.2e-23 110.5 96 57.3
Nn4g23008 Nelumbo nucifera HOM05D002474 ORTHO05D006727 7.2e-23 110.5 96 57.3
Migut.K01338 Erythranthe guttata HOM05D002474 ORTHO05D006727 1.6e-22 109.4 96 55.2
QL02p080121 Quercus lobata HOM05D002474 ORTHO05D006727 2.1e-22 109.0 96 57.3
Haze_14590 Corylus avellana HOM05D002474 ORTHO05D006727 2.7e-22 108.6 96 58.3
GSVIVG01032597001 Vitis vinifera HOM05D002474 ORTHO05D006727 2.7e-22 108.6 96 58.3
HPP92_014139 Vanilla planifolia HOM05D002474 ORTHO05D006727 3.6e-22 108.2 98 56.1
CiPaw.04G020500 Carya illinoinensis HOM05D002474 ORTHO05D006727 1.4e-21 106.3 96 54.2
Dinv33713 Davidia involucrata HOM05D002474 ORTHO05D006727 1.4e-21 106.3 96 55.2
PSO478G4089 Papaver somniferum HOM05D002474 ORTHO05D006727 1.8e-21 105.9 96 54.2
Zm00001eb033100 Zea mays HOM05D002474 ORTHO05D006727 1.8e-21 105.9 96 55.2
FvH4_6g49390 Fragaria vesca HOM05D002474 ORTHO05D006727 2.3e-21 105.5 96 54.2
QL02p080225 Quercus lobata HOM05D002474 ORTHO05D006727 2.3e-21 105.5 96 55.2
TPR.G4252 Trifolium pratense HOM05D002474 ORTHO05D006727 2.3e-21 105.5 96 54.2
ECA246G0556 Erigeron canadensis HOM05D002474 ORTHO05D006727 3.0e-21 105.1 96 54.2
Lsat_1_v5_gn_3_102300 Lactuca sativa HOM05D002474 ORTHO05D006727 3.0e-21 105.1 96 55.2
Ca_04259_v3 Cicer arietinum L. HOM05D002474 ORTHO05D006727 4.0e-21 104.8 96 54.2
EL10Ac2g02929 Beta vulgaris HOM05D002474 ORTHO05D006727 5.2e-21 104.4 96 54.2
Potri.004G130000 Populus trichocarpa HOM05D002474 ORTHO05D006727 5.2e-21 104.4 96 56.2
arahy.Tifrunner.gnm1.ann1.B2F8E8 Arachis hypogaea HOM05D002474 ORTHO05D006727 6.7e-21 104.0 98 52.0
FAN05G2709 Fragaria x ananassa HOM05D002474 ORTHO05D006727 6.7e-21 104.0 96 54.2
Eucgr.J02138 Eucalyptus grandis HOM05D002474 ORTHO05D006727 1.1e-20 103.2 96 55.2
FAN02G0112 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.1e-20 103.2 96 53.1
Medtr6g011270 Medicago truncatula HOM05D002474 ORTHO05D006727 1.1e-20 103.2 96 53.1
Ah.12g065360 Amaranthus hybridus HOM05D002474 ORTHO05D006727 1.5e-20 102.8 96 53.1
Cc07_g02930 Coffea canephora HOM05D002474 ORTHO05D006727 1.5e-20 102.8 96 53.1
Lj2g0026556 Lotus japonicus HOM05D002474 ORTHO05D006727 1.5e-20 102.8 96 52.1
Lalb_Chr06g0175531 Lupinus albus HOM05D002474 ORTHO05D006727 1.5e-20 102.8 96 50.0
Phvul.004G025500 Phaseolus vulgaris HOM05D002474 ORTHO05D006727 1.5e-20 102.8 96 52.1
RcHm_v2.0_Chr2g0169251 Rosa chinensis HOM05D002474 ORTHO05D006727 1.5e-20 102.8 96 54.2
SGA_v2.0_scaffold224G42953 Striga asiatica HOM05D002474 ORTHO05D006727 1.5e-20 102.8 98 51.0
CsaV3_5G037800 Cucumis sativus L. HOM05D002474 ORTHO05D006727 2.0e-20 102.4 96 55.2
Oeu033341.3 Olea europaea HOM05D002474 ORTHO05D006727 2.6e-20 102.1 96 57.3
Psat1g077640 Pisum sativum HOM05D002474 ORTHO05D006727 2.6e-20 102.1 96 53.1
Peaxi162Scf00059g00319 Petunia axillaris HOM05D002474 ORTHO05D006727 3.3e-20 101.7 96 53.1
Nitab4.5_0002699g0040 Nicotiana tabacum HOM05D002474 ORTHO05D006727 4.4e-20 101.3 96 53.1
Nitab4.5_0006062g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 4.4e-20 101.3 96 53.1
Nitab4.5_0023901g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 4.4e-20 101.3 96 53.1
PSO161G0033 Papaver somniferum HOM05D002474 ORTHO05D006727 4.4e-20 101.3 96 53.1
CAN.G1128.5 Capsicum annuum HOM05D002474 ORTHO05D006727 5.7e-20 100.9 96 51.0
MELO3C021965.2 Cucumis melo HOM05D002474 ORTHO05D006727 5.7e-20 100.9 96 54.2
Hund13252 Selenicereus undatus HOM05D002474 ORTHO05D006727 5.7e-20 100.9 96 52.1
Aqoxy3G00804 Aquilegia oxysepala HOM05D002474 ORTHO05D006727 9.7e-20 100.1 96 54.2
Solyc02g067480.3 Solanum lycopersicum HOM05D002474 ORTHO05D006727 9.7e-20 100.1 96 52.1
Sopen02g016630 Solanum pennellii HOM05D002474 ORTHO05D006727 9.7e-20 100.1 96 52.1
unitig_748.g8621 Utricularia gibba HOM05D002474 ORTHO05D006727 9.7e-20 100.1 96 52.1
Hma1.2p1_0449F.1_g154950 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 1.7e-19 99.4 98 51.0
Sc11g0006920 Simmondsia chinensis HOM05D002474 ORTHO05D006727 1.7e-19 99.4 96 52.1
CSS0021046 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 2.8e-19 98.6 96 54.2
CSS0037906 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 2.8e-19 98.6 96 54.2
Os12g0638800 Oryza sativa ssp. japonica HOM05D002474 ORTHO05D006727 3.7e-19 98.2 96 51.0
RhsimUnG0054500 Rhododendron simsii HOM05D002474 ORTHO05D006727 4.8e-19 97.8 116 48.3
PGSC0003DMG400006940 Solanum tuberosum HOM05D002474 ORTHO05D006727 4.8e-19 97.8 96 51.0
CDE08G1502 Ceratophyllum demersum HOM05D002474 ORTHO05D006727 1.1e-18 96.7 96 51.0
Rhsim10G0032000 Rhododendron simsii HOM05D002474 ORTHO05D006727 1.1e-18 96.7 85 56.5
Cfa007503 Carpinus fangiana HOM05D002474 ORTHO05D006727 5.9e-17 90.9 128 43.0
arahy.Tifrunner.gnm1.ann1.DRNA5E Arachis hypogaea HOM05D002474 ORTHO05D006727 1.0e-16 90.1 87 48.3
FAN14G2185 Fragaria x ananassa HOM05D002474 ORTHO05D006727 2.2e-16 89.0 128 40.6
Mapoly0035s0063 Marchantia polymorpha HOM05D002474 ORTHO05D006727 3.8e-16 88.2 97 45.4
FAN09G4837 Fragaria x ananassa HOM05D002474 ORTHO05D006727 5.0e-16 87.8 127 40.2
Pp3c23_2270 Physcomitrium patens HOM05D002474 ORTHO05D006727 2.5e-15 85.5 96 45.8
Lj7A402G46 Lonicera japonica HOM05D002474 ORTHO05D006727 9.4e-15 83.6 77 53.2
SMO137G0254 Selaginella moellendorffii HOM05D002474 ORTHO05D006727 6.1e-14 80.9 96 41.7
Sabra04G0087600 Salix brachista HOM05D002474 ORTHO05D006727 1.4e-13 79.7 77 51.9
VMungo0464G0136 Vigna mungo HOM05D002474 ORTHO05D006727 3.0e-13 78.6 77 50.6
Glyma.19G019000 Glycine max HOM05D002474 ORTHO05D006727 6.8e-13 77.4 76 50.0
Sed0010242 Sechium edule HOM05D002474 ORTHO05D006727 6.8e-13 77.4 77 50.6
AUR62018296 Chenopodium quinoa HOM05D002474 ORTHO05D006727 8.8e-13 77.0 77 50.6
CBR_g50657 Chara braunii HOM05D002474 ORTHO05D006727 2.0e-12 75.9 97 41.2
AUR62031654 Chenopodium quinoa HOM05D002474 ORTHO05D006727 2.0e-12 75.9 77 49.4
ClCG09G018440 Citrullus lanatus HOM05D002474 ORTHO05D006727 3.4e-12 75.1 77 49.4
TWI60G0106 Tripterygium wilfordii HOM05D002474 ORTHO05D006727 4.4e-12 74.7 68 57.4
Lsat_1_v5_gn_2_107941 Lactuca sativa HOM05D002474 ORTHO05D005260 7.5e-12 73.9 95 41.1
Cpa.g.sc14.49 Carica papaya HOM05D002474 ORTHO05D006727 9.8e-12 73.6 81 48.1
MBI04_g20673_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 1.7e-11 72.8 58 53.4
vmacro05750 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 2.8e-11 72.0 75 46.7
AagrBONN_evm.TU.Sc2ySwM_369.199 Anthoceros agrestis HOM05D002474 ORTHO05D006727 8.3e-11 70.5 96 34.4
DCAR_011168 Daucus carota HOM05D002474 ORTHO05D006727 1.4e-10 69.7 56 53.6
Lsat_1_v5_gn_6_77521 Lactuca sativa HOM05D002474 ORTHO05D006727 3.1e-10 68.6 56 50.0
SalBow1G0883 Salvia bowleyana HOM05D002474 ORTHO05D006727 4.5e-09 64.7 70 52.9
Sp3g32050 Schrenkiella parvula HOM05D002474 ORTHO05D006727 2.5e-07 58.9 27 88.9


User provided reference genes

Program Settings