Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 1.4e-204 716.1 360 100.0
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 1.4e-204 716.1 360 100.0
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 1.4e-204 716.1 360 100.0
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 3.9e-199 698.0 360 96.9
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 3.9e-199 698.0 360 96.9
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 8.6e-199 696.8 360 97.2
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 5.3e-188 661.0 360 90.8
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.5e-182 642.9 360 88.3
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 7.9e-176 620.5 363 85.4
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 1.3e-167 593.2 364 83.0
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 5.1e-167 591.3 363 82.9
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.1e-166 590.1 364 82.4
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 1.6e-157 559.7 364 78.6
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 1.9e-153 546.2 351 78.3
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 3.1e-124 449.1 337 68.5
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 4.1e-124 448.7 293 75.4
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 6.5e-122 441.4 304 73.0
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 1.9e-121 439.9 360 65.0
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 2.1e-120 436.4 362 65.2
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 2.7e-120 436.0 286 74.8
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 6.1e-120 434.9 287 75.6
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 2.3e-119 433.0 316 69.3
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 5.2e-119 431.8 357 64.4
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 2.0e-118 429.9 329 66.6
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 5.7e-118 428.3 326 69.0
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 1.7e-117 426.8 304 70.1
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 1.7e-117 426.8 281 75.1
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 4.9e-117 425.2 352 63.6
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 8.3e-117 424.5 330 67.0
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 1.8e-116 423.3 348 64.4
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 1.8e-116 423.3 344 64.0
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 2.4e-116 422.9 352 64.8
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 3.1e-116 422.5 359 63.5
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 4.1e-116 422.2 359 63.0
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 5.4e-116 421.8 333 63.7
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 3.5e-115 419.1 359 63.0
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 5.9e-115 418.3 288 72.9
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 7.7e-115 417.9 349 63.9
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 7.7e-115 417.9 368 60.9
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 7.7e-115 417.9 330 64.8
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 1.0e-114 417.5 339 65.8
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 1.3e-114 417.2 285 73.3
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 2.3e-114 416.4 366 61.5
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 2.3e-114 416.4 344 64.0
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 2.9e-114 416.0 317 67.2
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 3.8e-114 415.6 348 63.5
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 3.8e-114 415.6 352 62.2
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 2.5e-113 412.9 352 61.1
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 4.2e-113 412.1 373 60.3
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 5.5e-113 411.8 309 66.7
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 5.5e-113 411.8 285 72.3
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 5.5e-113 411.8 343 63.8
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 9.5e-113 411.0 317 66.9
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 9.5e-113 411.0 370 60.5
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 1.2e-112 410.6 371 61.7
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 1.6e-112 410.2 319 66.5
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 1.6e-112 410.2 312 65.7
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 2.1e-112 409.8 318 65.7
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 3.6e-112 409.1 346 62.1
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 8.0e-112 407.9 311 65.3
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 8.0e-112 407.9 364 60.4
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 1.2e-110 404.1 364 60.2
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 1.5e-110 403.7 293 71.3
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 4.4e-110 402.1 292 67.8
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 5.7e-110 401.7 374 58.8
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 7.5e-110 401.4 345 60.9
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 1.3e-109 400.6 264 75.0
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 8.3e-109 397.9 360 59.7
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 8.3e-109 397.9 336 62.5
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 9.2e-108 394.4 307 64.8
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 4.6e-107 392.1 344 63.4
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 7.8e-107 391.3 332 61.4
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 8.6e-106 387.9 328 59.8
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 6.1e-104 381.7 314 64.3
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 2.0e-102 376.7 343 59.5
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 6.4e-101 371.7 302 62.9
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 1.1e-100 370.9 360 57.8
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 2.0e-99 366.7 351 56.4
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 1.6e-96 357.1 267 65.2
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 1.2e-94 350.9 253 64.4
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 1.5e-94 350.5 344 55.5
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 2.0e-94 350.1 263 63.9
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 3.4e-94 349.4 258 62.8
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 4.4e-94 349.0 289 61.2
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 9.8e-94 347.8 272 62.5
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 2.2e-93 346.7 258 62.4
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 2.2e-93 346.7 258 63.2
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 9.2e-92 341.3 346 54.3
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 1.2e-91 340.9 274 59.1
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.6e-91 340.5 248 67.3
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 2.1e-91 340.1 258 61.6
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 6.0e-91 338.6 256 64.1
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 1.0e-90 337.8 253 64.0
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 2.3e-90 336.7 242 66.9
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 6.6e-90 335.1 242 66.1
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 1.9e-89 333.6 305 55.1
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 2.5e-89 333.2 256 61.7
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 4.3e-89 332.4 249 65.1
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 1.2e-88 330.9 250 64.8
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 2.8e-88 329.7 262 59.5
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 6.2e-88 328.6 261 59.4
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 8.1e-88 328.2 373 52.3
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 1.8e-87 327.0 257 59.5
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 1.8e-87 327.0 262 59.2
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 4.0e-87 325.9 261 59.4
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 6.8e-87 325.1 257 62.6
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 4.4e-86 322.4 269 59.9
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 5.8e-86 322.0 269 58.4
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 7.1e-84 315.1 232 62.1
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 3.5e-83 312.8 255 59.6
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 4.6e-83 312.4 263 57.0
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 6.0e-83 312.0 255 59.6
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 6.0e-83 312.0 300 53.3
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.7e-82 310.5 255 59.6
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 3.0e-82 309.7 266 55.6
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 3.0e-82 309.7 266 55.6
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 3.9e-82 309.3 258 57.8
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.9e-81 307.0 230 60.9
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 3.1e-79 299.7 228 64.5
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 4.4e-78 295.8 271 52.8
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 4.4e-78 295.8 271 52.8
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 9.9e-78 294.7 256 61.7
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 1.9e-76 290.4 264 52.7
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 3.2e-76 289.7 255 53.7
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 1.7e-74 283.9 193 71.5
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 1.5e-73 280.8 255 54.1
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 4.0e-71 272.7 257 52.1
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 4.9e-69 265.8 345 42.3
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 6.4e-69 265.4 270 52.2
Glyma.07G166800 Glycine max HOM05D003990 ORTHO05D004925 1.9e-68 263.8 172 73.8
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 4.6e-67 259.2 229 53.7
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 7.9e-67 258.5 246 53.7
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 1.1e-65 254.6 258 50.8
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.1e-65 254.6 258 50.8
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 5.3e-63 245.7 194 65.5
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.1e-60 238.0 257 47.5
Thecc.03G222500 Theobroma cacao HOM05D003990 ORTHO05D004925 1.3e-58 231.1 194 59.3
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.8e-58 230.7 179 59.2
Sp7g22040 Schrenkiella parvula HOM05D003990 ORTHO05D004925 1.1e-57 228.0 162 65.4
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 1.9e-57 227.3 284 45.4
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 1.9e-57 227.3 224 54.5
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 9.0e-55 218.4 125 84.0
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 5.8e-54 215.7 387 36.2
Aa31LG6G7290 Aethionema arabicum HOM05D003990 ORTHO05D004925 1.9e-52 210.7 165 60.6
FAN18G2679 Fragaria x ananassa HOM05D003990 ORTHO05D004925 4.6e-51 206.1 140 72.1
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.8e-50 204.1 166 56.0
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 1.9e-49 200.7 250 42.8
Zm00001eb366680 Zea mays HOM05D003990 ORTHO05D004925 5.1e-42 176.0 312 42.0
PRCOL_00003301 Prasinoderma coloniale HOM05D003990 ORTHO05D004925 6.7e-42 175.6 237 41.4
Hma1.2p1_0440F.1_g153760 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 1.5e-38 164.5 199 48.7
CAN.G479.14 Capsicum annuum HOM05D003990 ORTHO05D004925 3.0e-34 150.2 134 57.5
AagrBONN_evm.TU.Sc2ySwM_228.2729 Anthoceros agrestis HOM05D003990 ORTHO05D004925 4.2e-28 129.8 244 35.7
Haze_16436 Corylus avellana HOM05D003990 ORTHO05D004925 6.7e-26 122.5 201 41.3
Duzib068G0872 Durio zibethinus HOM05D003990 ORTHO05D004925 6.7e-26 122.5 87 64.4
Zm00001eb314200 Zea mays HOM05D003990 ORTHO05D004925 1.1e-25 121.7 244 34.0
arahy.Tifrunner.gnm1.ann1.R8SYM2 Arachis hypogaea HOM05D003990 ORTHO05D004925 2.6e-25 120.6 115 55.7
Migut.E00635 Erythranthe guttata HOM05D003990 ORTHO05D004925 1.4e-23 114.8 91 64.8
Thhalv10027505m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 2.4e-23 114.0 110 49.1
Cre01.g015550 Chlamydomonas reinhardtii HOM05D003990 ORTHO05D004925 7.7e-22 109.0 181 37.0
Cfa021766 Carpinus fangiana HOM05D003990 ORTHO05D004925 9.4e-20 102.1 253 28.1
FAN18G2309 Fragaria x ananassa HOM05D003990 ORTHO05D004925 6.1e-19 99.4 146 46.6
arahy.Tifrunner.gnm1.ann1.S5BUNY Arachis hypogaea HOM05D003990 ORTHO05D004925 2.8e-16 90.5 65 64.6
EL10Ac6g14266 Beta vulgaris HOM05D003990 ORTHO05D004925 2.2e-13 80.9 70 55.7
AagrBONN_evm.TU.Sc2ySwM_344.3329 Anthoceros agrestis HOM05D003990 ORTHO05D071624 6.5e-13 79.3 281 27.8
arahy.Tifrunner.gnm1.ann1.228U7D Arachis hypogaea HOM05D003990 ORTHO05D004925 6.5e-13 79.3 68 55.9
AT4G24070 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 6.1e-11 72.8 64 51.6
Hma1.2p1_0212F.1_g090250 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 6.1e-11 72.8 51 60.8
unitig_52.g17197 Utricularia gibba HOM05D003990 ORTHO05D004925 1.4e-10 71.6 49 69.4
QL02p029160 Quercus lobata HOM05D003990 ORTHO05D004925 3.0e-10 70.5 64 54.7
Prupe.2G052300 Prunus persica HOM05D003990 ORTHO05D004925 4.0e-10 70.1 66 50.0
QL02p029165 Quercus lobata HOM05D003990 ORTHO05D010865 8.8e-10 68.9 58 60.3
VMungo0647G2082 Vigna mungo HOM05D003990 ORTHO05D004925 1.1e-07 62.0 72 50.0


User provided reference genes

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