Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p36020 Brassica napus HOM05D005336 ORTHO05D006511 6.3e-76 287.3 143 100.0
BolC9t56436H Brassica oleracea HOM05D005336 ORTHO05D006511 6.3e-76 287.3 143 100.0
A09p28450 Brassica napus HOM05D005336 ORTHO05D006511 1.0e-73 280.0 143 96.5
BraA09t38410Z Brassica rapa HOM05D005336 ORTHO05D006511 2.9e-73 278.5 143 97.2
BcaB01g01514 Brassica carinata HOM05D005336 ORTHO05D006511 3.6e-71 271.6 143 93.7
Sp6g06720 Schrenkiella parvula HOM05D005336 ORTHO05D006511 3.9e-62 241.5 141 82.3
BcaB07g31580 Brassica carinata HOM05D005336 ORTHO05D006511 9.4e-56 220.3 146 76.7
AL2G11840 Arabidopsis lyrata HOM05D005336 ORTHO05D006511 1.2e-55 219.9 147 76.9
AT1G63310 Arabidopsis thaliana HOM05D005336 ORTHO05D006511 2.1e-55 219.2 147 75.5
Sp2g01210 Schrenkiella parvula HOM05D005336 ORTHO05D006511 3.6e-55 218.4 146 76.7
CARHR047990 Cardamine hirsuta HOM05D005336 ORTHO05D006511 3.0e-54 215.3 148 76.4
A09p13620 Brassica napus HOM05D005336 ORTHO05D006511 4.0e-54 214.9 146 74.0
BcaB07g31399 Brassica carinata HOM05D005336 ORTHO05D006511 8.8e-54 213.8 146 76.7
BraA09t37015Z Brassica rapa HOM05D005336 ORTHO05D006511 1.5e-53 213.0 146 73.3
BcaC04g22699 Brassica carinata HOM05D005336 ORTHO05D006511 3.3e-53 211.8 148 73.0
C09p16280 Brassica napus HOM05D005336 ORTHO05D006511 3.3e-53 211.8 148 73.0
BolC9t54538H Brassica oleracea HOM05D005336 ORTHO05D006511 3.3e-53 211.8 148 73.0
Thhalv10023730m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 9.7e-53 210.3 152 73.7
A09p15530 Brassica napus HOM05D005336 ORTHO05D006511 2.0e-50 202.6 148 74.3
Carub.0002s0149 Capsella rubella HOM05D005336 ORTHO05D006511 2.0e-50 202.6 156 72.4
BraA09t37193Z Brassica rapa HOM05D005336 ORTHO05D006511 1.7e-49 199.5 148 73.6
BcaC04g22484 Brassica carinata HOM05D005336 ORTHO05D006511 2.9e-49 198.7 148 73.0
BolC9t54780H Brassica oleracea HOM05D005336 ORTHO05D006511 2.9e-49 198.7 148 73.0
Thhalv10029291m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 8.5e-49 197.2 144 71.5
C09p18780 Brassica napus HOM05D005336 ORTHO05D006511 1.1e-48 196.8 148 73.0
Aa31sc221G90 Aethionema arabicum HOM05D005336 ORTHO05D006511 1.4e-43 179.9 149 64.4
THA.LOC104798383 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 1.8e-38 162.9 145 62.1
THA.LOC104798386 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 1.8e-38 162.9 145 62.1
THA.LOC104809289 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 6.8e-38 161.0 142 62.7
Duzib205G0686 Durio zibethinus HOM05D005336 ORTHO05D006511 3.3e-24 115.5 140 46.4
Duzib068G0481 Durio zibethinus HOM05D005336 ORTHO05D006511 9.5e-24 114.0 144 44.4
Glyma.13G227300 Glycine max HOM05D005336 ORTHO05D006511 2.6e-21 105.9 109 46.8
Lj2P149T61 Lonicera japonica HOM05D005336 ORTHO05D006511 2.6e-21 105.9 127 43.3
Thecc.03G215000 Theobroma cacao HOM05D005336 ORTHO05D006511 3.4e-21 105.5 138 44.2
Glyma.15G085000 Glycine max HOM05D005336 ORTHO05D006511 4.4e-21 105.1 131 42.7
Haze_09222 Corylus avellana HOM05D005336 ORTHO05D006511 5.8e-21 104.8 119 46.2
Medtr2g016680 Medicago truncatula HOM05D005336 ORTHO05D006511 5.8e-21 104.8 116 44.8
Gorai.003G073000 Gossypium raimondii HOM05D005336 ORTHO05D006511 2.2e-20 102.8 140 42.9
VMungo0720G3070 Vigna mungo HOM05D005336 ORTHO05D006511 2.9e-20 102.4 117 44.4
Glyma.01G146800 Glycine max HOM05D005336 ORTHO05D006511 3.7e-20 102.1 117 42.7
Glyma.10G112800 Glycine max HOM05D005336 ORTHO05D006511 3.7e-20 102.1 117 42.7
Gohir.D03G088700 Gossypium hirsutum HOM05D005336 ORTHO05D006511 3.7e-20 102.1 140 42.9
CiPaw.11G108200 Carya illinoinensis HOM05D005336 ORTHO05D006511 4.9e-20 101.7 137 40.9
Lj6g0026446 Lotus japonicus HOM05D005336 ORTHO05D006511 4.9e-20 101.7 123 42.3
Cfa011882 Carpinus fangiana HOM05D005336 ORTHO05D006511 6.4e-20 101.3 118 46.6
Ca_00460_v3 Cicer arietinum L. HOM05D005336 ORTHO05D006511 6.4e-20 101.3 139 38.8
Gohir.A02G094800 Gossypium hirsutum HOM05D005336 ORTHO05D006511 6.4e-20 101.3 138 42.8
Eucgr.E01097 Eucalyptus grandis HOM05D005336 ORTHO05D006511 8.3e-20 100.9 108 45.4
Phvul.007G247100 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 8.3e-20 100.9 132 42.4
QL12p003217 Quercus lobata HOM05D005336 ORTHO05D006511 8.3e-20 100.9 116 48.3
TPR.G4515 Trifolium pratense HOM05D005336 ORTHO05D006511 8.3e-20 100.9 116 42.2
Phvul.006G173850 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 1.4e-19 100.1 124 41.9
Dinv08689 Davidia involucrata HOM05D005336 ORTHO05D006511 1.9e-19 99.8 97 50.5
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 2.4e-19 99.4 141 43.3
COL.COLO4_10851 Corchorus olitorius HOM05D005336 ORTHO05D006511 3.2e-19 99.0 145 42.1
Sopen01g028460 Solanum pennellii HOM05D005336 ORTHO05D006511 3.2e-19 99.0 141 41.8
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 4.1e-19 98.6 142 43.0
MD06G1125100 Malus domestica HOM05D005336 ORTHO05D006511 5.4e-19 98.2 129 45.0
PGSC0003DMG400044996 Solanum tuberosum HOM05D005336 ORTHO05D006511 5.4e-19 98.2 141 41.1
Lalb_Chr19g0129261 Lupinus albus HOM05D005336 ORTHO05D006511 7.0e-19 97.8 116 44.8
Solyc01g066860.3 Solanum lycopersicum HOM05D005336 ORTHO05D006511 7.0e-19 97.8 141 41.8
VMungo0540G0063 Vigna mungo HOM05D005336 ORTHO05D006511 1.2e-18 97.1 121 41.3
Duzib084G1128 Durio zibethinus HOM05D005336 ORTHO05D006511 1.6e-18 96.7 148 39.2
ClCG07G008170 Citrullus lanatus HOM05D005336 ORTHO05D006511 2.1e-18 96.3 141 44.0
Psat1g195600 Pisum sativum HOM05D005336 ORTHO05D006511 2.7e-18 95.9 116 40.5
Sed0023501 Sechium edule HOM05D005336 ORTHO05D006511 2.7e-18 95.9 113 45.1
SGA_v2.0_scaffold99G29499 Striga asiatica HOM05D005336 ORTHO05D006511 2.7e-18 95.9 124 42.7
MD00G1118700 Malus domestica HOM05D005336 ORTHO05D006511 3.5e-18 95.5 131 45.0
PGSC0003DMG400037636 Solanum tuberosum HOM05D005336 ORTHO05D006511 4.6e-18 95.1 133 42.1
Rhsim02G0255200 Rhododendron simsii HOM05D005336 ORTHO05D006511 6.0e-18 94.7 117 47.0
SGA_v2.0_scaffold71G23936 Striga asiatica HOM05D005336 ORTHO05D006511 6.0e-18 94.7 123 42.3
CAN.G129.24 Capsicum annuum HOM05D005336 ORTHO05D006511 1.0e-17 94.0 132 43.2
Oeu026757.1 Olea europaea HOM05D005336 ORTHO05D006511 1.0e-17 94.0 131 40.5
Solyc12g099590.1 Solanum lycopersicum HOM05D005336 ORTHO05D006511 1.0e-17 94.0 130 40.8
TWI15G0432 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 1.0e-17 94.0 126 42.1
Sopen12g034260 Solanum pennellii HOM05D005336 ORTHO05D006511 1.3e-17 93.6 113 44.2
TWI81G0214 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 1.3e-17 93.6 106 48.1
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 1.7e-17 93.2 144 43.1
Nitab4.5_0000960g0060 Nicotiana tabacum HOM05D005336 ORTHO05D006511 1.7e-17 93.2 141 37.6
Nitab4.5_0008499g0040 Nicotiana tabacum HOM05D005336 ORTHO05D006511 1.7e-17 93.2 141 37.6
FAN04G3153 Fragaria x ananassa HOM05D005336 ORTHO05D006511 3.0e-17 92.4 151 37.7
Dinv11470 Davidia involucrata HOM05D005336 ORTHO05D006511 3.9e-17 92.0 128 46.1
Gohir.A12G243100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 6.6e-17 91.3 143 41.3
DCAR_023826 Daucus carota HOM05D005336 ORTHO05D006511 8.6e-17 90.9 120 43.3
FAN08G3085 Fragaria x ananassa HOM05D005336 ORTHO05D006511 1.1e-16 90.5 151 37.1
AUR62001462 Chenopodium quinoa HOM05D005336 ORTHO05D006511 1.9e-16 89.7 141 37.6
FvH4_5g10310 Fragaria vesca HOM05D005336 ORTHO05D006511 1.9e-16 89.7 140 37.1
FAN18G0874 Fragaria x ananassa HOM05D005336 ORTHO05D006511 1.9e-16 89.7 140 37.1
Gorai.008G261600 Gossypium raimondii HOM05D005336 ORTHO05D006511 1.9e-16 89.7 143 41.3
MSTRG.13689 Avicennia marina HOM05D005336 ORTHO05D006511 2.5e-16 89.4 138 41.3
Peaxi162Scf00498g00079 Petunia axillaris HOM05D005336 ORTHO05D006511 2.5e-16 89.4 130 41.5
Cc05_g01210 Coffea canephora HOM05D005336 ORTHO05D006511 4.3e-16 88.6 111 44.1
Gohir.D12G244100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 4.3e-16 88.6 143 41.3
Actinidia27276 Actinidia chinensis HOM05D005336 ORTHO05D006511 7.3e-16 87.8 110 40.9
Potri.011G149100 Populus trichocarpa HOM05D005336 ORTHO05D006511 7.3e-16 87.8 81 53.1
unitig_62.g23264 Utricularia gibba HOM05D005336 ORTHO05D006511 7.3e-16 87.8 122 41.0
Ciclev10022546m.g Citrus clementina HOM05D005336 ORTHO05D006511 1.2e-15 87.0 148 35.8
RcHm_v2.0_Chr7g0187911 Rosa chinensis HOM05D005336 ORTHO05D006511 1.2e-15 87.0 146 39.7
SalBow1G3976 Salvia bowleyana HOM05D005336 ORTHO05D006511 1.2e-15 87.0 132 35.6
Potri.001G452900 Populus trichocarpa HOM05D005336 ORTHO05D006511 1.6e-15 86.7 113 40.7
Sabra11G0134200 Salix brachista HOM05D005336 ORTHO05D006511 1.6e-15 86.7 123 43.1
CSS0030685 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 2.1e-15 86.3 122 41.0
FAN13G1264 Fragaria x ananassa HOM05D005336 ORTHO05D006511 2.1e-15 86.3 140 35.7
Lsat_1_v5_gn_8_120821 Lactuca sativa HOM05D005336 ORTHO05D006511 2.1e-15 86.3 153 36.6
Prupe.5G135700 Prunus persica HOM05D005336 ORTHO05D006511 2.1e-15 86.3 129 41.1
CSS0006649 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 3.6e-15 85.5 84 52.4
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 3.6e-15 85.5 134 38.8
MBI12_g05895_MAGBIO Magnolia biondii HOM05D005336 ORTHO05D006511 4.7e-15 85.1 125 40.0
PGR031G1780 Punica granatum HOM05D005336 ORTHO05D006511 4.7e-15 85.1 128 40.6
Actinidia04156 Actinidia chinensis HOM05D005336 ORTHO05D006511 6.2e-15 84.7 91 45.1
CANSAT21G1898 Cannabis sativa HOM05D005336 ORTHO05D006511 1.4e-14 83.6 131 38.9
PSO675G0589 Papaver somniferum HOM05D005336 ORTHO05D006511 1.4e-14 83.6 144 33.3
TAR375G0214 Trochodendron aralioides HOM05D005336 ORTHO05D006511 1.4e-14 83.6 149 36.2
Ah.15g095260 Amaranthus hybridus HOM05D005336 ORTHO05D006511 1.8e-14 83.2 135 39.3
AUR62009906 Chenopodium quinoa HOM05D005336 ORTHO05D006511 1.8e-14 83.2 151 35.8
Lsat_1_v5_gn_4_127821 Lactuca sativa HOM05D005336 ORTHO05D006511 2.3e-14 82.8 126 38.9
Nitab4.5_0018124g0020 Nicotiana tabacum HOM05D005336 ORTHO05D006511 4.0e-14 82.0 130 37.7
Ah.08g216960 Amaranthus hybridus HOM05D005336 ORTHO05D006511 5.2e-14 81.6 120 38.3
ECA233G5147 Erigeron canadensis HOM05D005336 ORTHO05D006511 6.8e-14 81.3 120 40.8
Nn3g18754 Nelumbo nucifera HOM05D005336 ORTHO05D006511 6.8e-14 81.3 143 34.3
CiPaw.12G074100 Carya illinoinensis HOM05D005336 ORTHO05D006511 8.9e-14 80.9 72 54.2
arahy.Tifrunner.gnm1.ann1.W1T8WI Arachis hypogaea HOM05D005336 ORTHO05D006511 1.2e-13 80.5 114 39.5
SalBow5G4925 Salvia bowleyana HOM05D005336 ORTHO05D006511 1.2e-13 80.5 103 41.7
arahy.Tifrunner.gnm1.ann1.GG3QCC Arachis hypogaea HOM05D005336 ORTHO05D006511 1.5e-13 80.1 135 37.0
Sabra16G0306000 Salix brachista HOM05D005336 ORTHO05D006511 1.7e-12 76.6 151 34.4
Cpa.g.sc62.61 Carica papaya HOM05D005336 ORTHO05D006511 4.9e-12 75.1 79 48.1
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 5.4e-11 71.6 121 33.9
Oeu011890.1 Olea europaea HOM05D005336 ORTHO05D006511 5.4e-11 71.6 68 51.5
HanXRQChr05g0144281 Helianthus annuus HOM05D005336 ORTHO05D006511 9.2e-11 70.9 148 32.4
Actinidia22234 Actinidia chinensis HOM05D005336 ORTHO05D006511 1.2e-10 70.5 77 45.5
Glyma.02G159700 Glycine max HOM05D005336 ORTHO05D006511 1.7e-09 66.6 54 57.4
PGR042G3248 Punica granatum HOM05D005336 ORTHO05D006511 3.0e-09 65.9 110 36.4
ATR0579G028 Amborella trichopoda HOM05D005336 ORTHO05D006511 1.5e-08 63.5 106 33.0
CDE09G0230 Ceratophyllum demersum HOM05D005336 ORTHO05D006511 4.3e-08 62.0 135 31.1
Atru.chr9.1827 Acer truncatum HOM05D005336 ORTHO05D006511 5.6e-08 61.6 56 51.8
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 8.1e-07 57.8 97 35.1
SEGI_10606 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 1.8e-06 56.6 114 35.1
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 3.1e-06 55.8 118 33.9
Ciclev10024004m.g Citrus clementina HOM05D007918 ORTHO05D010025 4.0e-06 55.5 69 39.1
CsaV3_6G008950 Cucumis sativus L. HOM05D004242 ORTHO05D004349 4.0e-06 55.5 142 28.2
SEGI_39402 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 4.0e-06 55.5 118 33.9
Gohir.A03G079100 Gossypium hirsutum HOM05D000342 ORTHO05D000217 5.2e-06 55.1 127 31.5
Glyma.07G052566 Glycine max HOM05D004242 ORTHO05D004349 6.8e-06 54.7 139 31.7
Sed0027906 Sechium edule HOM05D030996 ORTHO05D004349 6.8e-06 54.7 63 39.7
SEGI_05135 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 6.8e-06 54.7 125 30.4
VMungo0331G0257 Vigna mungo HOM05D004242 ORTHO05D004349 6.8e-06 54.7 131 32.8
Aqoxy5G00124 Aquilegia oxysepala HOM05D007918 ORTHO05D010025 8.9e-06 54.3 84 33.3
Glyma.16G021500 Glycine max HOM05D004242 ORTHO05D004349 8.9e-06 54.3 81 39.5
Zm00001eb418860 Zea mays HOM05D005336 ORTHO05D006511 8.9e-06 54.3 98 32.7


User provided reference genes

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