Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 2.7e-49 198.4 100 100.0
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 4.6e-49 197.6 99 99.0
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 1.2e-41 172.9 100 90.0
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 9.5e-39 163.3 102 84.3
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 1.2e-38 162.9 92 90.2
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 2.1e-38 162.2 91 89.0
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 2.1e-38 162.2 91 89.0
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 4.7e-38 161.0 91 89.0
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 8.1e-38 160.2 91 89.0
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 8.1e-38 160.2 91 89.0
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 2.4e-37 158.7 91 87.9
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 7.6e-36 153.7 88 88.6
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 4.9e-35 151.0 91 81.3
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 8.7e-32 140.2 116 69.0
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 1.9e-26 122.5 97 61.9
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 5.4e-26 120.9 91 65.9
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 7.1e-26 120.6 94 62.8
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 7.1e-26 120.6 94 61.7
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 9.3e-26 120.2 94 59.6
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 1.2e-25 119.8 94 60.6
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 1.2e-25 119.8 94 59.6
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 1.2e-25 119.8 94 60.6
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 1.2e-25 119.8 94 61.7
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 1.2e-25 119.8 94 61.7
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 1.2e-25 119.8 94 61.7
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 1.6e-25 119.4 94 62.8
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 1.6e-25 119.4 94 59.6
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 2.7e-25 118.6 91 63.7
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 3.5e-25 118.2 94 60.6
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 3.5e-25 118.2 94 60.6
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 3.5e-25 118.2 94 60.6
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 4.6e-25 117.9 94 59.6
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 4.6e-25 117.9 94 60.6
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 4.6e-25 117.9 94 60.6
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 4.6e-25 117.9 91 61.5
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 6.0e-25 117.5 94 59.6
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 6.0e-25 117.5 94 60.6
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 6.0e-25 117.5 94 60.6
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 1.0e-24 116.7 94 59.6
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 1.3e-24 116.3 90 65.6
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 2.3e-24 115.5 91 60.4
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 2.3e-24 115.5 94 58.5
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 2.3e-24 115.5 94 58.5
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 3.9e-24 114.8 94 58.5
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 3.9e-24 114.8 94 57.4
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 5.1e-24 114.4 94 57.4
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 8.7e-24 113.6 91 57.1
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 8.7e-24 113.6 96 58.3
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 8.7e-24 113.6 94 57.4
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 8.7e-24 113.6 94 57.4
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 8.7e-24 113.6 94 57.4
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 8.7e-24 113.6 94 57.4
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 1.1e-23 113.2 94 57.4
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 1.1e-23 113.2 91 59.3
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 1.1e-23 113.2 92 60.9
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 1.1e-23 113.2 94 57.4
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 1.1e-23 113.2 94 56.4
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 1.1e-23 113.2 94 56.4
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 1.1e-23 113.2 92 59.8
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 1.5e-23 112.8 94 56.4
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 1.5e-23 112.8 94 56.4
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 1.5e-23 112.8 90 60.0
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 1.9e-23 112.5 91 57.1
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 2.5e-23 112.1 94 56.4
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 2.5e-23 112.1 94 56.4
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 2.5e-23 112.1 94 55.3
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 3.3e-23 111.7 94 57.4
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 3.3e-23 111.7 94 57.4
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 3.3e-23 111.7 94 55.3
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 3.3e-23 111.7 94 56.4
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 3.3e-23 111.7 94 58.5
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 4.3e-23 111.3 94 56.4
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 4.3e-23 111.3 91 58.2
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 4.3e-23 111.3 91 58.2
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 5.6e-23 110.9 91 59.3
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 5.6e-23 110.9 89 58.4
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 5.6e-23 110.9 94 55.3
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 5.6e-23 110.9 94 57.4
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 5.6e-23 110.9 94 56.4
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 5.6e-23 110.9 94 55.3
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 5.6e-23 110.9 94 55.3
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 7.3e-23 110.5 94 55.3
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 7.3e-23 110.5 94 55.3
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 7.3e-23 110.5 94 55.3
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 7.3e-23 110.5 94 55.3
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 7.3e-23 110.5 94 55.3
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 7.3e-23 110.5 94 55.3
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 9.6e-23 110.2 91 58.2
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 9.6e-23 110.2 94 55.3
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 9.6e-23 110.2 94 55.3
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 9.6e-23 110.2 94 55.3
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 9.6e-23 110.2 94 55.3
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 9.6e-23 110.2 94 56.4
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 9.6e-23 110.2 92 58.7
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 9.6e-23 110.2 94 55.3
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 9.6e-23 110.2 94 55.3
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 1.3e-22 109.8 89 57.3
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 1.3e-22 109.8 94 55.3
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.3e-22 109.8 94 55.3
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 1.3e-22 109.8 94 55.3
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 1.3e-22 109.8 94 55.3
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 1.3e-22 109.8 94 55.3
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 1.3e-22 109.8 94 58.5
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 1.6e-22 109.4 94 55.3
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 1.6e-22 109.4 94 54.3
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 2.1e-22 109.0 94 55.3
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 2.1e-22 109.0 94 55.3
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 2.1e-22 109.0 94 54.3
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 2.1e-22 109.0 94 55.3
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 2.1e-22 109.0 94 54.3
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 3.6e-22 108.2 91 57.1
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 4.8e-22 107.8 94 54.3
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 6.2e-22 107.5 94 52.1
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 6.2e-22 107.5 94 55.3
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 8.1e-22 107.1 94 54.3
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 8.1e-22 107.1 94 54.3
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 1.1e-21 106.7 94 53.2
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 1.1e-21 106.7 94 54.3
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 1.4e-21 106.3 91 53.8
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 1.8e-21 105.9 94 54.3
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 2.4e-21 105.5 94 55.3
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 2.4e-21 105.5 94 55.3
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 2.4e-21 105.5 94 52.1
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 2.4e-21 105.5 94 52.1
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 3.1e-21 105.1 94 53.2
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 3.1e-21 105.1 94 53.2
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 4.0e-21 104.8 89 56.2
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 5.3e-21 104.4 94 53.2
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 3.4e-20 101.7 94 51.1
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 5.8e-20 100.9 90 53.3
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 5.8e-20 100.9 94 53.2
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 9.9e-20 100.1 94 50.0
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 9.9e-20 100.1 91 49.5
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 9.9e-20 100.1 91 50.5
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 1.3e-19 99.8 91 51.6
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 2.9e-19 98.6 94 51.1
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 4.9e-19 97.8 94 47.9
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 6.4e-19 97.4 91 48.4
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 8.4e-19 97.1 110 44.5
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 1.4e-18 96.3 94 48.9
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 1.9e-18 95.9 94 44.7
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 2.4e-18 95.5 120 48.3
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 3.2e-18 95.1 94 47.9
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 7.1e-18 94.0 91 48.4
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 9.3e-18 93.6 74 56.8
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 1.6e-17 92.8 94 47.9
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 6.0e-17 90.9 94 43.6
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 7.9e-17 90.5 75 56.0
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 1.0e-16 90.1 66 65.2
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 1.8e-16 89.4 61 67.2
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 1.8e-16 89.4 61 67.2
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 2.3e-16 89.0 127 38.6
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 3.0e-16 88.6 71 56.3
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 3.0e-16 88.6 69 59.4
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 4.3e-15 84.7 70 55.7
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 7.4e-15 84.0 73 53.4
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 4.5e-12 74.7 59 54.2
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 7.6e-12 73.9 92 44.6
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 2.2e-11 72.4 71 49.3
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 1.9e-10 69.3 100 42.0
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 2.7e-09 65.5 48 62.5
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 6.0e-09 64.3 101 36.6
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.8e-08 62.8 124 32.3
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 5.1e-08 61.2 53 50.9
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 6.7e-08 60.8 73 43.8
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 1.1e-07 60.1 71 45.1
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 7.4e-07 57.4 53 49.1
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 9.6e-07 57.0 40 67.5
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 6.2e-06 54.3 32 81.2


User provided reference genes

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