Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p34930 Brassica napus HOM05D001108 ORTHO05D005418 2.0e-28 128.3 60 100.0
C09p34920 Brassica napus HOM05D001108 ORTHO05D005418 5.0e-19 97.1 48 95.8
BolC9t56339H Brassica oleracea HOM05D001108 ORTHO05D005418 5.0e-19 97.1 48 95.8
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 7.8e-12 73.2 50 76.0
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 7.8e-12 73.2 50 76.0
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 7.8e-12 73.2 50 76.0
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 1.0e-11 72.8 50 76.0
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 1.0e-11 72.8 50 76.0
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 1.7e-11 72.0 50 74.0
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 1.7e-11 72.0 50 74.0
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 1.7e-11 72.0 50 74.0
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 1.7e-11 72.0 50 74.0
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 8.6e-11 69.7 50 72.0
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 7.3e-10 66.6 49 71.4
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 2.1e-09 65.1 52 69.2
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 2.1e-09 65.1 52 69.2
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 2.8e-09 64.7 50 66.0
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 6.2e-09 63.5 51 64.7
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 6.2e-09 63.5 52 65.4
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 6.2e-09 63.5 52 63.5
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 6.2e-09 63.5 52 63.5
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 8.1e-09 63.2 50 64.0
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 8.1e-09 63.2 52 63.5
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 1.1e-08 62.8 52 61.5
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 1.1e-08 62.8 52 61.5
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 1.8e-08 62.0 52 61.5
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 2.3e-08 61.6 50 62.0
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 4.0e-08 60.8 49 65.3
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 4.0e-08 60.8 52 61.5
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 8.9e-08 59.7 49 65.3
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 8.9e-08 59.7 52 57.7
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 1.5e-07 58.9 52 55.8
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 1.5e-07 58.9 62 50.0
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 2.6e-07 58.2 52 57.7
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 2.6e-07 58.2 52 55.8
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 3.4e-07 57.8 51 60.8
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 3.4e-07 57.8 51 56.9
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 4.4e-07 57.4 51 58.8
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 4.4e-07 57.4 50 56.0
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 5.8e-07 57.0 52 55.8
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 7.6e-07 56.6 51 58.8
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 9.9e-07 56.2 50 54.0
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 1.3e-06 55.8 52 57.7
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 1.3e-06 55.8 51 56.9
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 1.3e-06 55.8 51 56.9
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 1.7e-06 55.5 51 56.9
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 1.7e-06 55.5 49 59.2
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 1.7e-06 55.5 51 54.9
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 1.7e-06 55.5 51 54.9
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 1.7e-06 55.5 51 58.8
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 1.7e-06 55.5 51 58.8
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 2.2e-06 55.1 49 59.2
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 2.2e-06 55.1 49 59.2
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 2.2e-06 55.1 51 56.9
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 2.2e-06 55.1 52 55.8
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 2.2e-06 55.1 52 55.8
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 2.2e-06 55.1 51 54.9
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 2.9e-06 54.7 48 60.4
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 2.9e-06 54.7 48 60.4
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 3.7e-06 54.3 49 57.1
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 3.7e-06 54.3 46 63.0
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 6.4e-06 53.5 47 59.6
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 6.4e-06 53.5 52 51.9
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 6.4e-06 53.5 52 53.8
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 6.4e-06 53.5 51 54.9
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 6.4e-06 53.5 51 54.9
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 8.4e-06 53.1 50 52.0
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 8.4e-06 53.1 50 58.0
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 8.4e-06 53.1 50 58.0
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 8.4e-06 53.1 50 58.0
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 8.4e-06 53.1 50 58.0
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 8.4e-06 53.1 52 53.8
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 8.4e-06 53.1 52 51.9
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 8.4e-06 53.1 46 60.9


User provided reference genes

Program Settings