Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p34920 Brassica napus HOM05D001108 ORTHO05D005418 1.3e-23 112.1 53 100.0
BolC9t56339H Brassica oleracea HOM05D001108 ORTHO05D005418 1.3e-23 112.1 53 100.0
C09p34930 Brassica napus HOM05D001108 ORTHO05D005418 2.6e-19 97.8 48 95.8
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 6.2e-13 76.6 54 72.2
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 6.2e-13 76.6 54 72.2
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 6.2e-13 76.6 54 72.2
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 8.1e-13 76.3 54 72.2
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 8.1e-13 76.3 54 72.2
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 1.4e-12 75.5 54 70.4
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 1.4e-12 75.5 54 70.4
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 1.4e-12 75.5 54 70.4
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 1.4e-12 75.5 54 70.4
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 6.9e-12 73.2 54 68.5
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 7.6e-11 69.7 53 67.9
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 1.7e-10 68.6 56 66.1
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 1.7e-10 68.6 56 66.1
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 2.2e-10 68.2 54 63.0
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 4.9e-10 67.0 56 62.5
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 4.9e-10 67.0 56 60.7
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 4.9e-10 67.0 56 60.7
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 6.4e-10 66.6 55 61.8
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 6.4e-10 66.6 56 60.7
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 8.4e-10 66.2 54 61.1
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 8.4e-10 66.2 56 58.9
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 8.4e-10 66.2 56 58.9
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 1.4e-09 65.5 56 58.9
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 2.4e-09 64.7 54 59.3
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 3.2e-09 64.3 53 62.3
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 3.2e-09 64.3 56 58.9
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 7.1e-09 63.2 53 62.3
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 7.1e-09 63.2 56 55.4
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 1.2e-08 62.4 56 53.6
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 2.1e-08 61.6 56 55.4
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 2.1e-08 61.6 56 53.6
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 2.7e-08 61.2 55 56.4
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 3.5e-08 60.8 55 58.2
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 3.5e-08 60.8 55 54.5
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 4.6e-08 60.5 55 56.4
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 7.9e-08 59.7 55 56.4
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 1.0e-07 59.3 54 51.9
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 1.0e-07 59.3 56 55.4
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 1.0e-07 59.3 50 56.0
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 1.3e-07 58.9 52 55.8
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 1.3e-07 58.9 53 56.6
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 1.3e-07 58.9 55 54.5
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 1.3e-07 58.9 55 54.5
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 1.8e-07 58.5 56 53.6
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 1.8e-07 58.5 55 54.5
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 1.8e-07 58.5 55 52.7
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 1.8e-07 58.5 55 52.7
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 1.8e-07 58.5 55 56.4
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 1.8e-07 58.5 56 53.6
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 1.8e-07 58.5 55 56.4
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 2.3e-07 58.2 53 56.6
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 2.3e-07 58.2 53 56.6
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 2.3e-07 58.2 55 54.5
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 2.3e-07 58.2 55 52.7
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 3.0e-07 57.8 52 57.7
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 3.9e-07 57.4 53 54.7
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 3.9e-07 57.4 50 60.0
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 5.1e-07 57.0 51 56.9
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 5.1e-07 57.0 56 50.0
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 5.1e-07 57.0 56 51.8
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 6.7e-07 56.6 56 51.8
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 6.7e-07 56.6 48 60.4
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 6.7e-07 56.6 55 52.7
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 6.7e-07 56.6 55 52.7
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 6.7e-07 56.6 56 50.0
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 8.7e-07 56.2 54 50.0
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 8.7e-07 56.2 54 55.6
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 8.7e-07 56.2 54 55.6
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 8.7e-07 56.2 54 55.6
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 8.7e-07 56.2 54 55.6
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 8.7e-07 56.2 50 58.0
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 8.7e-07 56.2 56 50.0
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.1e-06 55.8 53 54.7
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.5e-06 55.5 54 50.0
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 1.5e-06 55.5 54 53.7
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 1.5e-06 55.5 56 50.0
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 1.9e-06 55.1 52 55.8
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 1.9e-06 55.1 56 50.0
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 2.5e-06 54.7 48 58.3
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 2.5e-06 54.7 52 53.8
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 2.5e-06 54.7 50 58.0
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 2.5e-06 54.7 50 58.0
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 2.5e-06 54.7 50 58.0
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 2.5e-06 54.7 53 54.7
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 3.3e-06 54.3 52 55.8
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 4.3e-06 53.9 54 48.1
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 4.3e-06 53.9 50 54.0
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 4.3e-06 53.9 50 54.0
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 4.3e-06 53.9 50 54.0
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 4.3e-06 53.9 49 53.1
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 4.3e-06 53.9 49 53.1
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 4.3e-06 53.9 55 49.1
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 5.6e-06 53.5 48 56.2
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 5.6e-06 53.5 55 52.7
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 5.6e-06 53.5 52 50.0
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 5.6e-06 53.5 52 51.9
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 7.4e-06 53.1 54 50.0
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 9.6e-06 52.8 53 49.1


User provided reference genes

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