Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p34740 Brassica napus HOM05D005348 ORTHO05D006635 0.0e+00 1342.8 706 100.0
BolC9t56320H Brassica oleracea HOM05D005348 ORTHO05D006635 0.0e+00 1323.5 745 94.8
BraA09t38310Z Brassica rapa HOM05D005348 ORTHO05D006635 0.0e+00 1295.4 730 93.7
A09p27390 Brassica napus HOM05D005348 ORTHO05D006635 0.0e+00 1280.4 707 94.8
Sp6g05730 Schrenkiella parvula HOM05D005348 ORTHO05D006635 0.0e+00 1181.4 706 87.1
BcaB01g01675 Brassica carinata HOM05D005348 ORTHO05D006635 0.0e+00 1178.7 700 85.6
BcaB05g23815 Brassica carinata HOM05D005348 ORTHO05D006635 0.0e+00 1163.7 704 84.4
AL6G46446 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 0.0e+00 1145.6 719 81.4
AL6G46320 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 0.0e+00 1141.3 718 83.3
Carub.0006s3081 Capsella rubella HOM05D005348 ORTHO05D006635 0.0e+00 1134.0 719 79.0
AT4G11720 Arabidopsis thaliana HOM05D005348 ORTHO05D006635 0.0e+00 1124.0 719 81.6
CARHR254650 Cardamine hirsuta HOM05D005348 ORTHO05D006635 0.0e+00 1107.8 712 82.4
Thhalv10028515m.g Eutrema salsugineum HOM05D005348 ORTHO05D006635 8.7e-304 1046.6 637 83.5
THA.LOC104813014 Tarenaya hassleriana HOM05D005348 ORTHO05D006635 9.1e-285 983.4 633 75.7
Aa31LG9G10660 Aethionema arabicum HOM05D005348 ORTHO05D006635 8.5e-283 976.9 697 74.5
QL12p017446 Quercus lobata HOM05D005348 ORTHO05D006635 1.6e-268 929.5 597 73.5
Thecc.03G272300 Theobroma cacao HOM05D005348 ORTHO05D006635 3.2e-266 921.8 594 73.1
Duzib068G0163 Durio zibethinus HOM05D005348 ORTHO05D006635 4.7e-265 917.9 611 71.8
Gorai.007G022400 Gossypium raimondii HOM05D005348 ORTHO05D006635 3.7e-262 908.3 597 71.9
PGR031G1121 Punica granatum HOM05D005348 ORTHO05D006635 5.3e-261 904.4 581 72.8
Medtr5g010740 Medicago truncatula HOM05D005348 ORTHO05D006635 5.5e-258 894.4 614 68.9
FvH4_5g28890 Fragaria vesca HOM05D005348 ORTHO05D006635 1.8e-256 889.4 595 70.8
MD04G1066100 Malus domestica HOM05D005348 ORTHO05D006635 2.3e-256 889.0 606 70.0
Dinv39001 Davidia involucrata HOM05D005348 ORTHO05D006635 4.0e-256 888.3 604 69.9
PSO782G2170 Papaver somniferum HOM05D005348 ORTHO05D006635 6.8e-256 887.5 607 69.5
Prupe.5G092400 Prunus persica HOM05D005348 ORTHO05D006635 6.8e-256 887.5 605 69.6
Phvul.002G154300 Phaseolus vulgaris HOM05D005348 ORTHO05D006635 1.2e-255 886.7 595 69.6
TPR.G6715 Trifolium pratense HOM05D005348 ORTHO05D006635 4.4e-255 884.8 615 66.8
TAR375G0646 Trochodendron aralioides HOM05D005348 ORTHO05D006635 4.4e-255 884.8 582 71.1
Actinidia05223 Actinidia chinensis HOM05D005348 ORTHO05D006635 5.7e-255 884.4 605 69.6
Sc05g0000210 Simmondsia chinensis HOM05D005348 ORTHO05D006635 5.7e-255 884.4 575 71.5
PSO478G3496 Papaver somniferum HOM05D005348 ORTHO05D006635 2.2e-254 882.5 588 70.7
Manes.02G025740 Manihot esculenta HOM05D005348 ORTHO05D006635 2.8e-254 882.1 628 67.8
Psat2g181800 Pisum sativum HOM05D005348 ORTHO05D006635 8.3e-254 880.6 607 67.2
CANSAT21G2165 Cannabis sativa HOM05D005348 ORTHO05D006635 1.4e-253 879.8 579 70.6
CiPaw.11G140300 Carya illinoinensis HOM05D005348 ORTHO05D006635 1.6e-252 876.3 645 67.0
Migut.E01288 Erythranthe guttata HOM05D005348 ORTHO05D006635 5.9e-252 874.4 616 66.7
Lj2g0017844 Lotus japonicus HOM05D005348 ORTHO05D006635 7.7e-252 874.0 590 69.3
GSVIVG01019819001 Vitis vinifera HOM05D005348 ORTHO05D006635 2.9e-251 872.1 675 63.6
Aqoxy7G00422 Aquilegia oxysepala HOM05D005348 ORTHO05D006635 1.5e-250 869.8 583 69.8
Eucgr.D01915 Eucalyptus grandis HOM05D005348 ORTHO05D006635 3.3e-250 868.6 577 71.6
ClCG01G003080 Citrullus lanatus HOM05D005348 ORTHO05D006635 9.5e-250 867.1 631 65.9
CSS0016729 Camellia sinensis var. sinensis HOM05D005348 ORTHO05D006635 1.8e-248 862.8 589 67.4
Sed0022971 Sechium edule HOM05D005348 ORTHO05D006635 5.7e-247 857.8 599 66.6
SGA_v2.0_scaffold144G35970 Striga asiatica HOM05D005348 ORTHO05D006635 5.7e-247 857.8 599 66.8
arahy.Tifrunner.gnm1.ann1.C7APUF Arachis hypogaea HOM05D005348 ORTHO05D006635 1.3e-246 856.7 607 67.1
arahy.Tifrunner.gnm1.ann1.SKE7H3 Arachis hypogaea HOM05D005348 ORTHO05D006635 1.4e-245 853.2 607 66.7
Ciclev10019148m.g Citrus clementina HOM05D005348 ORTHO05D006635 1.4e-245 853.2 594 68.2
Cc08_g14090 Coffea canephora HOM05D005348 ORTHO05D006635 1.4e-245 853.2 669 61.9
RcHm_v2.0_Chr4g0410761 Rosa chinensis HOM05D005348 ORTHO05D006635 9.2e-245 850.5 580 70.2
CAN.G981.21 Capsicum annuum HOM05D005348 ORTHO05D006635 2.5e-242 842.4 639 62.9
Sopen08g028770 Solanum pennellii HOM05D005348 ORTHO05D006635 1.4e-240 836.6 636 63.2
SHI23548 Sapria himalayana HOM05D005348 ORTHO05D006635 3.1e-240 835.5 597 66.2
EL10Ac4g10111 Beta vulgaris HOM05D005348 ORTHO05D006635 5.8e-239 831.2 602 65.3
FAN13G3003 Fragaria x ananassa HOM05D005348 ORTHO05D006635 3.3e-234 815.5 637 63.4
Lalb_Chr16g0377191 Lupinus albus HOM05D005348 ORTHO05D006635 4.3e-234 815.1 596 65.1
Lsat_1_v5_gn_3_5380 Lactuca sativa HOM05D005348 ORTHO05D006635 2.8e-233 812.4 613 63.0
TWI15G0275 Tripterygium wilfordii HOM05D005348 ORTHO05D006635 1.2e-231 807.0 524 71.6
Sabra01G0082300 Salix brachista HOM05D005348 ORTHO05D006635 1.5e-231 806.6 645 61.4
DCAR_006756 Daucus carota HOM05D005348 ORTHO05D006635 1.3e-230 803.5 598 64.5
ECA240G2378 Erigeron canadensis HOM05D005348 ORTHO05D006635 6.4e-230 801.2 590 63.7
Rhsim07G0093800 Rhododendron simsii HOM05D005348 ORTHO05D006635 7.1e-229 797.7 750 55.1
Ah.06g194640 Amaranthus hybridus HOM05D005348 ORTHO05D006635 9.2e-229 797.3 586 64.5
Manes.01G066000 Manihot esculenta HOM05D005348 ORTHO05D006635 3.9e-227 792.0 537 70.0
SalBow1G6288 Salvia bowleyana HOM05D005348 ORTHO05D006635 6.6e-227 791.2 666 59.3
Potri.001G109000 Populus trichocarpa HOM05D005348 ORTHO05D006635 2.3e-224 782.7 536 69.0
Nn6g34225 Nelumbo nucifera HOM05D005348 ORTHO05D006635 6.8e-224 781.2 529 69.2
MELO3C005635.2 Cucumis melo HOM05D005348 ORTHO05D006635 4.9e-222 775.0 565 65.3
FAN18G1071 Fragaria x ananassa HOM05D005348 ORTHO05D006635 3.0e-219 765.8 591 65.1
Glyma.15G240000 Glycine max HOM05D005348 ORTHO05D006635 3.0e-219 765.8 537 67.4
Haze_08938 Corylus avellana HOM05D005348 ORTHO05D006635 3.3e-218 762.3 619 63.0
vmacro13927 Vaccinium macrocarpon HOM05D005348 ORTHO05D006635 3.6e-217 758.8 653 59.4
Glyma.11G026100 Glycine max HOM05D005348 ORTHO05D006635 6.2e-217 758.1 537 67.0
FAN18G0890 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.9e-210 736.5 598 62.5
CsaV3_5G003200 Cucumis sativus L. HOM05D005348 ORTHO05D006635 1.5e-207 726.9 528 66.7
Glyma.09G081600 Glycine max HOM05D005348 ORTHO05D006635 1.4e-205 720.3 485 68.9
Peaxi162Scf00714g00430 Petunia axillaris HOM05D005348 ORTHO05D006635 3.2e-205 719.2 485 70.1
AUR62037708 Chenopodium quinoa HOM05D005348 ORTHO05D006635 2.7e-204 716.1 543 64.8
AUR62000200 Chenopodium quinoa HOM05D005348 ORTHO05D006635 2.1e-201 706.4 536 64.7
Solyc08g080450.3 Solanum lycopersicum HOM05D005348 ORTHO05D006635 2.4e-197 693.0 565 60.4
Nitab4.5_0002234g0010 Nicotiana tabacum HOM05D005348 ORTHO05D006635 1.2e-196 690.6 630 57.0
Os05g0269500 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 1.2e-196 690.6 586 58.5
RcHm_v2.0_Chr7g0199071 Rosa chinensis HOM05D005348 ORTHO05D006635 1.0e-195 687.6 566 60.1
COL.COLO4_05261 Corchorus olitorius HOM05D005348 ORTHO05D006635 1.3e-195 687.2 595 58.8
AUR62006548 Chenopodium quinoa HOM05D005348 ORTHO05D006635 5.1e-195 685.3 512 63.3
MBI04_g31975_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 5.8e-191 671.8 576 59.0
Atru.chr9.1551 Acer truncatum HOM05D005348 ORTHO05D006635 1.3e-187 660.6 427 71.7
FvH4_5g01650 Fragaria vesca HOM05D005348 ORTHO05D006635 1.6e-180 637.1 519 63.0
Gohir.A11G021400 Gossypium hirsutum HOM05D005348 ORTHO05D006635 3.0e-179 632.9 394 74.1
Gohir.D11G021100 Gossypium hirsutum HOM05D005348 ORTHO05D006635 3.0e-179 632.9 394 73.9
Os09g0525700 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 4.3e-178 629.0 582 55.5
VMungo1215G1946 Vigna mungo HOM05D005348 ORTHO05D006635 1.7e-174 617.1 416 68.0
Lj8C237T7 Lonicera japonica HOM05D005348 ORTHO05D006635 8.2e-161 571.6 426 64.8
Nitab4.5_0002853g0050 Nicotiana tabacum HOM05D005348 ORTHO05D006635 9.4e-157 558.1 619 50.1
Ca_06657_v3 Cicer arietinum L. HOM05D005348 ORTHO05D006635 1.6e-151 540.8 586 50.7
unitig_26.g9696 Utricularia gibba HOM05D005348 ORTHO05D006635 1.4e-147 527.7 574 49.1
Cpa.g.sc29.190 Carica papaya HOM05D005348 ORTHO05D006635 3.6e-140 503.1 346 69.1
HPP92_004952 Vanilla planifolia HOM05D005348 ORTHO05D006635 2.1e-132 477.2 574 44.8
Zm00001eb103180 Zea mays HOM05D005348 ORTHO05D006635 1.1e-125 454.9 376 58.0
AUR62000197 Chenopodium quinoa HOM05D005348 ORTHO05D006635 2.6e-106 390.6 315 60.3
Glyma.09G081420 Glycine max HOM05D005348 ORTHO05D006635 9.2e-104 382.1 282 65.6
ATR0757G099 Amborella trichopoda HOM05D005348 ORTHO05D006635 1.2e-82 312.0 210 66.7
Hund02677 Selenicereus undatus HOM05D005348 ORTHO05D006635 9.0e-75 285.8 259 57.5
Hund02678 Selenicereus undatus HOM05D005348 ORTHO05D006635 7.9e-71 272.7 197 66.0
VMungo1215G1628 Vigna mungo HOM05D005348 ORTHO05D006635 6.3e-68 263.1 173 69.9
Prupe.8G039500 Prunus persica HOM05D005348 ORTHO05D006635 1.3e-65 255.4 297 47.1
FAN04G3017 Fragaria x ananassa HOM05D005348 ORTHO05D006635 8.5e-57 226.1 162 64.8
Prupe.8G039400 Prunus persica HOM05D005348 ORTHO05D006635 4.2e-56 223.8 158 67.1
FAN04G2632 Fragaria x ananassa HOM05D005348 ORTHO05D006635 4.8e-52 210.3 586 29.2
Cre16.g674852 Chlamydomonas reinhardtii HOM05D005348 ORTHO05D006635 2.0e-42 178.3 675 25.8
MBI04_g31964_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 7.7e-42 176.4 158 60.8
Glyma.11G176306 Glycine max HOM05D005348 ORTHO05D006635 6.5e-41 173.3 91 81.3
FAN08G1421 Fragaria x ananassa HOM05D005348 ORTHO05D006635 3.6e-39 167.5 131 67.9
FAN08G1570 Fragaria x ananassa HOM05D005348 ORTHO05D006635 6.1e-39 166.8 173 58.4
Glyma.01G216933 Glycine max HOM05D005348 ORTHO05D006635 7.5e-37 159.8 115 65.2
Mapoly0066s0032 Marchantia polymorpha HOM05D005348 ORTHO05D006635 7.0e-35 153.3 515 24.5
MSTRG.13824 Avicennia marina HOM05D005348 ORTHO05D006635 4.5e-34 150.6 94 70.2
Glyma.09G081380 Glycine max HOM05D005348 ORTHO05D006635 4.5e-34 150.6 114 59.6
CBR_g19301 Chara braunii HOM05D005348 ORTHO05D006635 1.7e-33 148.7 579 25.4
HanXRQChr02g0035411 Helianthus annuus HOM05D005348 ORTHO05D006635 2.5e-32 144.8 119 55.5
Peaxi162Scf00714g00422 Petunia axillaris HOM05D005348 ORTHO05D006635 3.2e-32 144.4 95 67.4
Pp3c25_15230 Physcomitrium patens HOM05D005348 ORTHO05D006635 5.5e-32 143.7 331 29.6
Mapoly0035s0066 Marchantia polymorpha HOM05D005348 ORTHO05D006635 5.7e-29 133.7 611 24.9
Gohir.D11G021150 Gossypium hirsutum HOM05D005348 ORTHO05D006635 1.7e-25 122.1 121 57.0
ATR0757G119 Amborella trichopoda HOM05D005348 ORTHO05D006635 1.5e-24 119.0 78 62.8
FAN13G0849 Fragaria x ananassa HOM05D005348 ORTHO05D006635 5.5e-24 117.1 96 69.8
FAN08G2219 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.3e-22 111.7 62 77.4
Glyma.11G026250 Glycine max HOM05D005348 ORTHO05D006635 2.3e-22 111.7 103 59.2
Lj8A237G27 Lonicera japonica HOM05D005348 ORTHO05D006635 5.2e-22 110.5 74 74.3
PGSC0003DMG400003049 Solanum tuberosum HOM05D005348 ORTHO05D006635 2.7e-18 98.2 57 73.7
arahy.Tifrunner.gnm1.ann1.AXGL4F Arachis hypogaea HOM05D005348 ORTHO05D006635 1.3e-17 95.9 62 69.4
FvH4_5g01630 Fragaria vesca HOM05D005348 ORTHO05D006635 8.3e-12 76.6 44 75.0
CsaV3_6G021380 Cucumis sativus L. HOM05D005348 ORTHO05D006635 1.0e-06 59.7 132 28.8


User provided reference genes

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